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Sánchez Sorzano, Carlos Oscar Author

The effect of overabundant projection directions on 3D reconstruction algorithms

  • Sorzano, COS
  • Marabini, R
  • Boisset, N
  • Rietzel, E
  • Schroder, R
  • Herman, GT
  • Carazo, JM
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/02/2001

10.1006/jsbi.2001.4338 View source

Cite count: 61 (Web of Science) 62 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 5.5 (2020)
  • SJR: 2.947 (2001
  • SNIP: 1.15 (2001
  • SJR Categories: Structural Biology (Q1)

Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE)

  • Sorzano, COS
  • Carazo, JM
  • Trelles, O

SOFTWARE-PRACTICE & EXPERIENCE - 25/7/2002

10.1002/spe.465 View source

Cite count: 2 (Web of Science) 2 (Scopus)
  • CiteScore: 5 (2020)
  • SJR: 0.756 (2002
  • SNIP: 1.228 (2002

Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication

  • Gomez-Lorenzo, MG
  • Valle, M
  • Frank, J
  • Gruss, C
  • Sorzano, COS
  • Chen, XS
  • Donate, LE
  • Carazo, JM
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EMBO JOURNAL - 1/12/2003

10.1093/emboj/cdg612 View source

Cite count: 51 (Web of Science) 53 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 10.456 (2022)
  • Category normalized Impact: 0.681 (2003)
  • CiteScore: 17.4 (2020)
  • SJR: 10.214 (2003
  • SNIP: 2.023 (2003
  • SJR Categories: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Immunology and Microbiology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1); Molecular Biology (Q1); Neuroscience (miscellaneous) (Q1)

A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment

  • Velazquez-Muriel, JA
  • Sorzano, COS
  • Fernandez, JJ
  • Carazo, JM

ULTRAMICROSCOPY - 1/7/2003

10.1016/s0304-3991(02)00377-7 View source

Cite count: 46 (Web of Science) 44 (Scopus)
  • JCR Quartile: Q2 (2003)
  • SJR Quartile: Q1
  • JCR Impact Factor: 1.665 (2022)
  • Category normalized Impact: 1.715 (2003)
  • CiteScore: 5 (2020)
  • SJR: 1.365 (2003
  • SNIP: 1.725 (2003
  • SJR Categories: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)

Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations

  • Zubelli, J.P.
  • Marabini, R.
  • Sorzano, C.O.S.
  • Herman, G.T.

INVERSE PROBLEMS - 1/8/2003

10.1088/0266-5611/19/4/310 View source

Cite count: 13 (Web of Science) 13 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 3.7 (2020)
  • SJR: 0.796 (2003
  • SNIP: 1.378 (2003
  • SJR Categories: Theoretical Computer Science (Q1); Applied Mathematics (Q2); Computer Science Applications (Q2); Signal Processing (Q2); Mathematical Physics (Q3)

XMIPP:: a new generation of an open-source image processing package for electron microscopy

  • Sorzano, C.O.S.
  • Marabini, R.
  • Velázquez-Muriel, J.
  • Bilbao-Castro, J.R.
  • Scheres, S.H.W.
  • Carazo, J.M.
  • Pascual-Montano, A.
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JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2004

10.1016/j.jsb.2004.06.006 View source

Cite count: 387 (Web of Science) 363 (Scopus)
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q2
  • JCR Impact Factor: 3.132 (2022)
  • Category normalized Impact: 6.073 (2004)
  • CiteScore: 5.5 (2020)
  • SJR: 2.385 (2004
  • SNIP: 1.286 (2004
  • SJR Categories: Structural Biology (Q2)

Normalizing projection images: a study of image normalizing procedures for single particle three-dimensional electron microscopy

  • Sorzana, COS
  • de la Fraga, LG
  • Clackdoyle, R
  • Carazo, JM

ULTRAMICROSCOPY - 1/11/2004

10.1016/j.ultramic.2004.04.004 View source

Cite count: 25 (Web of Science) 24 (Scopus)
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.215 (2022)
  • Category normalized Impact: 0.958 (2004)
  • CiteScore: 5 (2020)
  • SJR: 1.482 (2004
  • SNIP: 1.646 (2004
  • SJR Categories: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)

Phan3D:: design of biological phantoms in 3D electron microscopy

  • Bilbao-Castro J.
  • Sorzano C.
  • García I.
  • Fernández J.

BIOINFORMATICS - 22/11/2004

10.1093/bioinformatics/bth377

Cite count: 7 (Web of Science) 8 (Scopus)
  • JCR Quartile: Q1 (2004)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.742 (2022)
  • Category normalized Impact: 0.145 (2004)
  • CiteScore: 9.9 (2020)
  • SJR: 3.525 (2004
  • SNIP: 2.555 (2004
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)

Transfer function restoration in 3D electron microscopy via iterative data refinement

  • Sorzano, COS
  • Marabini, R
  • Herman, GT
  • Censor, Y
  • Carazo, JM

PHYSICS IN MEDICINE AND BIOLOGY - 21/2/2004

10.1088/0031-9155/49/4/003 View source

Cite count: 16 (Web of Science) 16 (Scopus)
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.368 (2022)
  • Category normalized Impact: 0.34 (2004)
  • CiteScore: 5.9 (2020)
  • SJR: 1.047 (2004
  • SNIP: 1.645 (2004
  • SJR Categories: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)

3-D reconstruction of 2-D crystals in real space

  • Marabini, R
  • Sorzano, COS
  • Matej, S
  • Fernandez, JJ
  • Carazo, JM
  • Herman, GT

IEEE TRANSACTIONS ON IMAGE PROCESSING - 1/4/2004

10.1109/tip.2003.822620 View source

Cite count: 16 (Web of Science) 16 (Scopus)
  • JCR Quartile: Q1 (2004)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.011 (2022)
  • Category normalized Impact: 0.483 (2004)
  • CiteScore: 16.3 (2020)
  • SJR: 1.315 (2004
  • SNIP: 4.401 (2004
  • SJR Categories: Computer Graphics and Computer-Aided Design (Q1); Software (Q1)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Splines in Biomedical Image Processing

  • Jonic S.
  • Sorzano C.

Optical and Digital Image Processing: Fundamentals and Applications - 29/4/2011

10.1002/9783527635245.ch6

Cite count: 3 (Scopus)

Processing of Transmission Electron Microscopy Images for Single-Particle Analysis of Macromolecular Complexes

  • Devaux, Zaelle
  • Sorzano, Carlos Oscar S.
  • Jonic, Slavica
  • Conn, PM

LABORATORY METHODS IN CELL BIOLOGY: BIOCHEMISTRY AND CELL CULTURE - 1/1/2012

10.1016/b978-0-12-405914-6.00016-0 View source

Cite count: 2 (Web of Science) 2 (Scopus)
  • JCR Quartile: Q2 (2012)
  • JCR Impact Factor: 1.444 (2012)
  • Category normalized Impact: 0.027 (2012)
  • CiteScore: 2.8 (2020)
  • SJR: 0.908 (2012
  • JCR 5-year Impact Factor: 1.932
  • JCR Categories: CELL BIOLOGY
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
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Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)
  • SJR Quartile: Q3
  • CiteScore: 2.2 (2020)
  • SJR: 0.751 (2013
  • SNIP: 0.362 (2013
  • SJR Categories: Genetics (Q3); Molecular Biology (Q3)

Effects of uneven sampling in 3D reconstructions.

  • Sorzano, COS
  • Marabini, R
  • Carazo, JM
  • Rietzel, E
  • Schroeder, R
  • Herman, GT
  • Boisset, N
  • Benavides, HAC
  • Yacaman, MJ
... View more Collapse

ELECTRON MICROSCOPY 1998, VOL 1 - 1998

Cite count:

Zero-loss P-contrast in EFTEM

  • Rietzel, E
  • Schorsch, P
  • Muller, H
  • Marabini, R
  • Sorzano, C
  • Carazo, JM
  • Schimpf, U
  • Leue, C
  • Holmes, KC
  • Schroder, RR
  • Benavides, HAC
  • Yacaman, MJ
... View more Collapse

ELECTRON MICROSCOPY 1998, VOL 4 - 1998

Cite count:

3D reconstruction of 2D crystals from projections in real space

  • Marabini, R
  • Herman, GT
  • Sorzano, COS
  • Carazo, JM
  • Fernandez, JJ
  • Matej, S
  • IEEE
... View more Collapse

2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029351 View source

Cite count: 1 (Scopus)

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R.
  • Herman G.
  • Sorzano C.
  • Carazo J.

2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029339 View source

Cite count: 5 (Scopus)

Grid computing in 3D-EM image processing using Xmipp

  • Scheres, SHW
  • Merino, AJ
  • Sorzano, COS
  • Carazo, JM
  • IEEE Comp Soc

18TH IEEE SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS, PROCEEDINGS - 10/11/2005

10.1109/cbms.2005.60 View source

Cite count: 1 (Web of Science) 3 (Scopus)
  • CiteScore: 1.8 (2020)
  • SJR: 0.194 (2005
  • SNIP: 0.374 (2005

AMON:: A software system for automatic generation of ontology mappings

  • Sanchez-Alberca, Alfredo
  • Garcia-Garcia, Raul
  • Sorzano, Carlos Oscar S.
  • Gutierrez-Cossio, Celia
  • Chagoyen, Monica
  • Lopez, Mariano Fernandez
  • Bento, C
  • Cardoso, A
  • Dias, G
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2005 PORTUGUESE CONFERENCE ON ARTIFICIAL INTELLIGENCE, PROCEEDINGS - 2005

10.1109/epia.2005.341277 View source

Cite count:

Molecular image registration using mutual information and differential evolution optimization

  • Telenczuk, Bartosz
  • Ledesma-Carbayo, Marta J.
  • Velazquez-Muriel, Javier A.
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
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2006 3RD IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1-3 - 17/11/2006

Cite count: 4 (Web of Science) 11 (Scopus)

Elastic image registration with applications to proteomics

  • Sorzano, C. O. S.
  • Thevenaz, P.
  • Valdes, I.
  • Beloso, A.
  • Unser, M.
  • Cristobal, G
  • Javidi, B
  • Vallmitjana, S
... View more Collapse

INFORMATION OPTICS - 1/12/2006

10.1063/1.2361232 View source

Cite count: 1 (Web of Science) 3 (Scopus)
  • CiteScore: 0.7 (2020)
  • SJR: 0.184 (2006
  • SNIP: 0.204 (2006

Intelligent alarms for patient supervision

  • Otero A.
  • Félix P.
  • Palacios F.
  • Pérez-Gandía C.
  • Sorzano C.

2007 IEEE INTERNATIONAL SYMPOSIUM ON INTELLIGENT SIGNAL PROCESSING, CONFERENCE PROCEEDINGS BOOK - 1/12/2007

10.1109/wisp.2007.4447555 View source

Cite count: 1 (Web of Science) 7 (Scopus)

Flexible image registration for the identification of best fitted protein models in 3D-EM maps

  • Fernandez-de-Manuell, Laura
  • Ledesma-Carbayol, Maria J.
  • Atienza-Herrero, Julian
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
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2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4 - 10/05/2008

10.1109/isbi.2008.4541163 View source

Cite count:

This author has no patents.

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Removal of the C6 vaccinia virus interferon-β inhibitor in the hepatitis C vaccine candidate MVA-HCV elicited in mice high immunogenicity in spite of reduced host gene expression

  • Q. Marín M
  • Pérez P
  • Gómez CE
  • S. Sorzano CO
  • Esteban M
  • García-Arriaza J

05/2018

10.1101/330902

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v2

  • ORCID

NAP-CNB: Bioinformatic pipeline to predict MHC-I-restricted T cell epitopes in mice

  • Carlos Wert-Carvajal
  • Rubén Sánchez-García
  • José R Macías
  • Rebeca Sanz-Pamplona
  • Almudena Méndez Pérez
  • Ramon Alemany
  • Esteban Veiga Chacón
  • Carlos Óscar S. Sorzano
  • Arrate Muñoz-Barrutia
... View more Collapse

5/10/2020

10.1101/2020.10.05.327015

  • ORCID

Statistical experiment design for animal research

  • Carlos Oscar S. Sorzano

2/06/2023

10.31219/osf.io/e9s25

  • ORCID

Unraveling the Power of NAP-CNB’s Machine Learning-enhanced Tumor Neoantigen Prediction

  • Almudena Mendez-Perez
  • Andres M Acosta-Moreno
  • Carlos Wert-Carvajal
  • Pilar Ballesteros-Cuartero
  • Ruben Sanchez-Garcia
  • Jose R Macias
  • Rebeca Sanz-Pamplona
  • Ramon Alemany
  • Carlos Oscar S Sorzano
  • Arrate Munoz-Barrutia
  • Esteban Veiga
... View more Collapse

22/11/2023

10.1101/2023.11.22.568042

  • ORCID

Real-space heterogeneous reconstruction, refinement, and disentanglement of CryoEM conformational states with HetSIREN

  • David Herreros
  • Carlos Perez Mata
  • Chari Noddings
  • Deli Irene
  • James Michael Krieger
  • David Agard
  • Ming-Daw Tsai
  • Carlos Oscar S Sorzano
  • Jose Maria Carazo
... View more Collapse

19/09/2024

10.1101/2024.09.16.613176

  • ORCID

Scopus: 36

Web of Science: 43

Scopus: 129

Web of Science: 174

Last data update: 11/22/24 7:57 AM
Next scheduled update: 11/23/24 3:00 AM