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Sánchez Sorzano, Carlos Oscar Author

A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis

  • Fernández-Giménez E.
  • Martínez M.M.
  • Marabini R.
  • Strelak D.
  • Sánchez-García R.
  • Carazo J.M.
  • Sorzano C.O.S.
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Journal of Structural Biology - 1/12/2023

10.1016/j.jsb.2023.108024

Cite count:
  • CiteScore: 6.1 (2022)
  • SJR: 1.582 (2022
  • SNIP: 0.773 (2022

A new algorithm for high-resolution reconstruction of single particles by electron microscopy

  • Sorzano C.
  • Vargas J.
  • de la Rosa-Trevín J.
  • Jiménez A.
  • Maluenda D.
  • Melero R.
  • Martínez M.
  • Ramírez-Aportela E.
  • Conesa P.
  • Vilas J.
  • Marabini R.
  • Carazo J.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2018

10.1016/j.jsb.2018.08.002

Cite count: 22 (Web of Science) 15 (Scopus)
  • JCR Quartile: Q2 (2018)
  • SJR Quartile: Q1
  • JCR Impact Factor: 3.754 (2022)
  • Category normalized Impact: 0.891 (2018)
  • CiteScore: 5.5 (2020)
  • SJR: 5.254 (2018
  • SNIP: 1.207 (2018
  • JCR 5-year Impact Factor: 3.522
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
  • SJR Categories: Structural Biology (Q1)

An Analytical Solution for Saturable Absorption in Pharmacokinetics Models

  • Sorzano C.O.S.
  • Moreno M.A.P.d.l.C.
  • Vilas J.L.

PHARMACEUTICAL RESEARCH - 1/1/2022

10.1007/s11095-022-03455-z

Cite count:
  • JCR Impact Factor: 3.7 (2022)
  • CiteScore: 6.9 (2022)
  • SJR: 0.644 (2022
  • SNIP: 0.917 (2022
  • JCR 5-year Impact Factor: 4
  • JCR Categories: PHARMACOLOGY & PHARMACY

A multiresolution approach to orientation assignment in 3D electron microscopy of single particles

  • Sorzano, COS
  • Jonic, S
  • El-Bez, C
  • Carazo, JM
  • De Carlo, S
  • Thevenaz, P
  • Unser, M
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Journal of Structural Biology - 1/06/2004

10.1016/j.jsb.2004.01.006 View source

Cite count: 35 (Web of Science) 38 (Scopus)
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q2
  • JCR Impact Factor: 3.132 (2022)
  • Category normalized Impact: 0.575 (2004)
  • CiteScore: 5.5 (2020)
  • SJR: 2.385 (2004
  • SNIP: 1.286 (2004
  • SJR Categories: Structural Biology (Q2)

A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment

  • Velazquez-Muriel, JA
  • Sorzano, COS
  • Fernandez, JJ
  • Carazo, JM

Ultramicroscopy - 1/07/2003

10.1016/s0304-3991(02)00377-7 View source

Cite count: 45 (Web of Science) 44 (Scopus)
  • JCR Quartile: Q2 (2003)
  • SJR Quartile: Q1
  • JCR Impact Factor: 1.665 (2022)
  • Category normalized Impact: 1.715 (2003)
  • CiteScore: 5 (2020)
  • SJR: 1.365 (2003
  • SNIP: 1.725 (2003
  • SJR Categories: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)

Alignment of direct detection device micrographs using a robust Optical Flow approach

  • Abrishami, Vahid
  • Vargas, Javier
  • Li, Xueming
  • Cheng, Yifan
  • Marabini, Roberto
  • Sanchez Sorzano, Carlos Oscar
  • Maria Carazo, Jose
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JOURNAL OF STRUCTURAL BIOLOGY - 1/03/2015

10.1016/j.jsb.2015.02.001 View source

Cite count: 49 (Web of Science) 45 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.57 (2015)
  • CiteScore: 5.5 (2020)
  • SJR: 3.448 (2015
  • SNIP: 1.109 (2015
  • JCR 5-year Impact Factor: 3.067
  • JCR Categories: BIOPHYSICS
  • SJR Categories: Structural Biology (Q1)

Algorithmic robustness to preferred orientations in single particle analysis by CryoEM

  • Sorzano C.O.S.
  • Semchonok D.
  • Lin S.C.
  • Lo Y.C.
  • Vilas J.L.
  • Jiménez-Moreno A.
  • Gragera M.
  • Vacca S.
  • Maluenda D.
  • Martínez M.
  • Ramírez-Aportela E.
  • Melero R.
  • Cuervo A.
  • Conesa J.J.
  • Conesa P.
  • Losana P.
  • Caño L.d.
  • de la Morena J.J.
  • Fonseca Y.C.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro F.
  • Herreros D.
  • Kastritis P.L.
  • Marabini R.
  • Bruce B.D.
  • Carazo J.M.
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JOURNAL OF STRUCTURAL BIOLOGY - 1/3/2021

10.1016/j.jsb.2020.107695

Cite count: 14 (Web of Science) 3 (Scopus)
  • JCR Quartile: Q2 (2021)
  • JCR Impact Factor: 3.234 (2022)
  • Category normalized Impact: 1.479 (2021)
  • CiteScore: 5.5 (2020)
  • SJR: 2.564 (2020
  • SNIP: 1.018 (2020
  • JCR 5-year Impact Factor: 4.064
  • JCR Categories: CELL BIOLOGY

Algorithm for spline-based elastic registration in application to confocal images of gene expression

  • Sorzano C.
  • Blagov M.
  • Thévenaz P.
  • Myasnikova E.
  • Samsonova M.
  • Unser M.

Pattern Recognition and Image Analysis - 1/3/2006

10.1134/s1054661806010299

Cite count: 5 (Scopus)
  • CiteScore: 2.4 (2020)
  • SJR Categories: Computer Graphics and Computer-Aided Design; Computer Vision and Pattern Recognition
Open Access

A Human Multi-Epitope Recombinant Vaccinia Virus as a Universal T Cell Vaccine Candidate against Influenza Virus

  • Goodman, Alan G.
  • Heinen, Paul P.
  • Guerra, Susana
  • Vijayan, Aneesh
  • Sorzano, Carlos Oscar S.
  • Gomez, Carmen E.
  • Esteban, Mariano
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PLoS One - 5/10/2011

10.1371/journal.pone.0025938 View source

Cite count: 39 (Web of Science) 35 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 4.092 (2011)
  • CiteScore: 5.3 (2020)
  • SJR: 2.425 (2011
  • SNIP: 1.255 (2011
  • JCR 5-year Impact Factor: 4.537
  • JCR Categories: BIOLOGY
  • SJR Categories: Agricultural and Biological Sciences (miscellaneous) (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1)

A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy

  • Kervrann, Charles
  • Sanchez Sorzano, Carlos Oscar
  • Acton, Scott T.
  • Olivo-Marin, Jean-Christophe
  • Unser, Michael

IEEE Journal of Selected Topics in Signal Processing - 1/02/2016

10.1109/jstsp.2015.2505402 View source

Cite count: 35 (Web of Science) 36 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.301 (2016)
  • CiteScore: 14.9 (2020)
  • SJR: 1.217 (2016
  • SNIP: 2.729 (2016
  • JCR 5-year Impact Factor: 5.294
  • JCR Categories: ENGINEERING, ELECTRICAL & ELECTRONIC
  • SJR Categories: Electrical and Electronic Engineering (Q1); Signal Processing (Q1)

Splines in Biomedical Image Processing

  • Jonic S.
  • Sorzano C.

Optical and Digital Image Processing: Fundamentals and Applications - 29/4/2011

10.1002/9783527635245.ch6

Cite count: 3 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Cite count: 4 (Web of Science) 3 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.156 (2014)
  • CiteScore: 0.8 (2020)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
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Methods In Molecular Biology (clifton, N.j.) - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)
  • SJR Quartile: Q3
  • CiteScore: 2.2 (2020)
  • SJR: 0.751 (2013
  • SNIP: 0.362 (2013
  • SJR Categories: Genetics (Q3); Molecular Biology (Q3)

Processing of Transmission Electron Microscopy Images for Single-Particle Analysis of Macromolecular Complexes

  • Devaux, Zaelle
  • Sorzano, Carlos Oscar S.
  • Jonic, Slavica
  • Conn, PM

Methods in Cell Biology - 1/1/2012

10.1016/b978-0-12-405914-6.00016-0 View source

Cite count: 2 (Web of Science) 2 (Scopus)
  • JCR Quartile: Q2 (2012)
  • JCR Impact Factor: 1.444 (2012)
  • Category normalized Impact: 0.027 (2012)
  • CiteScore: 2.8 (2020)
  • SJR: 0.908 (2012
  • JCR 5-year Impact Factor: 1.932
  • JCR Categories: CELL BIOLOGY

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... View more Collapse

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Cite count: 9 (Web of Science) 4 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.312 (2014)
  • CiteScore: 0.8 (2020)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... View more Collapse

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Cite count: 5 (Web of Science) 1 (Scopus)
  • JCR Quartile: Q2 (2021)
  • Category normalized Impact: 0.595 (2021)
  • CiteScore: 2.2 (2020)
  • SJR: 0.711 (2020
  • SNIP: 0.57 (2020

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R.
  • Herman G.
  • Sorzano C.
  • Carazo J.

Proceedings - International Symposium on Biomedical Imaging - 1/1/2002

10.1109/isbi.2002.1029339 View source

Cite count: 5 (Scopus)

Using Scipion for Stream Image Processing at CryoEM Facilities

  • de la Rosa-Trevin, J. M.
  • Gomez-Blanco, J.
  • Conesa, P.
  • Rancel, Y.
  • del Cano, L.
  • Arranz, R.
  • Chichon, F. J.
  • Martin-Benito, J.
  • Carroni, M.
  • Fleichman, S.
  • Lindahl, E.
  • Basham, M.
  • Clare, D. K.
  • Savage, K.
  • Siebert, C. A.
  • Ashton, A. W.
  • Marabini, R.
  • Sorzano, C. O. S.
  • Carazo, J. M.
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Acta Crystallographica Section A - Foundation and Advances - 07/2018

10.1107/s0108767318098380

  • JCR Impact Factor: 1.878 (2018)
  • JCR 5-year Impact Factor: 4.647
  • JCR Categories: CHEMISTRY, MULTIDISCIPLINARY

Molecular image registration using mutual information and differential evolution optimization

  • Telenczuk, Bartosz
  • Ledesma-Carbayo, Marta J.
  • Velazquez-Muriel, Javier A.
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
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2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano To Macro - Proceedings - 17/11/2006

Cite count: 4 (Web of Science) 11 (Scopus)

LocalDeblur: An automatic map sharpening by restauration of local resolution

  • Ramirez-Aportela, E.
  • Vilas, J. L.
  • Carazo, J. M.
  • Sanchez Sorzano, C. O.

European Biophysics Journal With Biophysics Letters - 07/2019

  • JCR Impact Factor: 2.094 (2019)
  • JCR 5-year Impact Factor: 1.888
  • JCR Categories: BIOPHYSICS

Iterative reconstruction for pet scanners with continuous scintillators

  • Iriarte A.
  • Caffarena G.
  • Lopez-Fernandez M.
  • Garcia-Carmona R.
  • Otero A.
  • Sorzano C.
  • Marabini R.
... View more Collapse

Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS - 4/08/2015

10.1109/embc.2015.7318842 View source

Cite count:
  • CiteScore: 1.5 (2020)
  • SJR: 0.263 (2015
  • SNIP: 0.653 (2015

Intelligent alarms for patient supervision

  • Otero A.
  • Félix P.
  • Palacios F.
  • Pérez-Gandía C.
  • Sorzano C.

2007 IEEE INTERNATIONAL SYMPOSIUM ON INTELLIGENT SIGNAL PROCESSING, CONFERENCE PROCEEDINGS BOOK - 1/12/2007

10.1109/wisp.2007.4447555 View source

Cite count: 1 (Web of Science) 7 (Scopus)

Improving 3D reconstructions of macromolecular conformations

  • Kazemi, M.
  • Sorzano, C. O. S.
  • Georges, A. Des
  • Carazo, J. M.
  • Vargas, J.

Acta Crystallographica Section A - Foundation and Advances - 07/2018

10.1107/s0108767318098446

  • JCR Impact Factor: 1.878 (2018)
  • JCR 5-year Impact Factor: 4.647
  • JCR Categories: CHEMISTRY, MULTIDISCIPLINARY

Image processing for Cellular tomography using soft X-rays

  • Sorzano, C. O. S.
  • Oton, J.
  • Cuenca, J.
  • Zaldivar-Perez, A.
  • Caffarena, G.
  • Sanchez-Jimenez, J.
  • Messaoudi, C.
  • Marco, S.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE
... View more Collapse

2012 9th Ieee International Symposium On Biomedical Imaging (isbi) - 2012

Grid computing in 3D-EM image processing using Xmipp

  • Scheres, SHW
  • Merino, AJ
  • Sorzano, COS
  • Carazo, JM
  • IEEE Comp Soc

Proceedings - Ieee Symposium On Computer-based Medical Systems - 10/11/2005

10.1109/cbms.2005.60 View source

Cite count: 1 (Web of Science) 3 (Scopus)
  • CiteScore: 1.8 (2020)
  • SJR: 0.194 (2005
  • SNIP: 0.374 (2005

Flexible image registration for the identification of best fitted protein models in 3D-EM maps

  • Fernandez-de-Manuell, Laura
  • Ledesma-Carbayol, Maria J.
  • Atienza-Herrero, Julian
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
... View more Collapse

2008 5th Ieee International Symposium On Biomedical Imaging: From Nano To Macro, Proceedings, Isbi - 10/05/2008

10.1109/isbi.2008.4541163 View source

Cite count:

This author has no patents.

Unraveling the Power of NAP-CNB’s Machine Learning-enhanced Tumor Neoantigen Prediction

  • Almudena Mendez-Perez
  • Andres M Acosta-Moreno
  • Carlos Wert-Carvajal
  • Pilar Ballesteros-Cuartero
  • Ruben Sanchez-Garcia
  • Jose R Macias
  • Rebeca Sanz-Pamplona
  • Ramon Alemany
  • Carlos Oscar S Sorzano
  • Arrate Munoz-Barrutia
  • Esteban Veiga
... View more Collapse

22/11/2023

10.1101/2023.11.22.568042

  • ORCID
Open Access

The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation

  • Tiziana Ginex
  • Clara Marco-Marín
  • Miłosz Wieczór
  • Carlos P. Mata
  • James Krieger
  • Maria Luisa López-Redondo
  • Clara Francés-Gómez
  • Paula Ruiz-Rodriguez
  • Roberto Melero
  • Carlos Óscar Sánchez-Sorzano
  • Marta Martínez
  • Nadine Gougeard
  • Alicia Forcada-Nadal
  • Sara Zamora-Caballero
  • Roberto Gozalbo-Rovira
  • Carla Sanz-Frasquet
  • Jeronimo Bravo
  • Vicente Rubio
  • Alberto Marina
  • Ron Geller
  • Iñaki Comas
  • Carmen Gil
  • Mireia Coscolla
  • Modesto Orozco
  • José Luis Llácer
  • José-Maria Carazo
... View more Collapse

PLoS Pathogens - 7/12/2021

10.1371/journal.ppat.1010631

Cite count: 8 (Web of Science)
  • JCR Impact Factor: 7.464 (2021)
  • CiteScore: 10.5 (2021)
  • SJR: 2.596 (2021
  • SNIP: 1.618 (2021
  • JCR 5-year Impact Factor: 7.913
  • JCR Categories: VIROLOGY

Statistical experiment design for animal research

  • Carlos Oscar S. Sorzano

2/06/2023

10.31219/osf.io/e9s25

  • ORCID

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

  • James Michael Krieger
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo

International Journal of Molecular Sciences - 10/08/2023

10.3390/ijms241814245

Cite count: 2 (Web of Science) 2 (Scopus)
  • CiteScore: 7.8 (2022)
  • SJR: 1.154 (2022
  • SNIP: 1.263 (2022

Removal of the C6 vaccinia virus interferon-β inhibitor in the hepatitis C vaccine candidate MVA-HCV elicited in mice high immunogenicity in spite of reduced host gene expression

  • Q. Marín M
  • Pérez P
  • Gómez CE
  • S. Sorzano CO
  • Esteban M
  • García-Arriaza J

05/2018

10.1101/330902

  • ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

NAP-CNB: Bioinformatic pipeline to predict MHC-I-restricted T cell epitopes in mice

  • Carlos Wert-Carvajal
  • Rubén Sánchez-García
  • José R Macías
  • Rebeca Sanz-Pamplona
  • Almudena Méndez Pérez
  • Ramon Alemany
  • Esteban Veiga Chacón
  • Carlos Óscar S. Sorzano
  • Arrate Muñoz-Barrutia
... View more Collapse

5/10/2020

10.1101/2020.10.05.327015

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v1

  • ORCID

Improvements on marker-free images alignment for electron tomography

  • C.O.S. Sorzano
  • F. de Isidro-Gómez
  • E. Fernández-Giménez
  • D. Herreros
  • S. Marco
  • J.M. Carazo
  • C. Messaoudi
... View more Collapse

Journal of Structural Biology: X - 24/05/2020

10.1101/2020.05.22.110445

Cite count: 8 (Web of Science)
  • SJR Quartile: Q4
  • JCR Impact Factor: 2.867 (2020)
  • JCR 5-year Impact Factor: 4.474
  • JCR Categories: CELL BIOLOGY
  • SJR Categories: Structural Biology (Q4)

Growth hormone remodels the 3D-structure of the mitochondria of inflammatory macrophages and promotes metabolic reprogramming

  • Blanca Soler Palacios
  • Ricardo Villares
  • Pilar Lucas
  • Jose Miguel Rodriguez Frade
  • Ana Cayuela
  • Jonathan Gabriel Piccirillo
  • David Delgado Gestoso
  • Cristina Risco
  • Fernando Corrales
  • Carlos Oscar S Sorzano
  • Nuria Martinez
  • Jose Javier Conesa
  • Francisco J. Iborra
  • Mario Mellado
... View more Collapse

Frontiers in Immunology - 22/08/2022

10.1101/2022.08.22.504729

Cite count:
  • JCR Impact Factor: 7.3 (2022)
  • JCR 5-year Impact Factor: 8
  • JCR Categories: IMMUNOLOGY

Scopus: 36

Web of Science: 42

Scopus: 129

Web of Science: 163

Last data update: 5/18/24 5:01 AM
Next scheduled update: 5/25/24 3:00 AM