| A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis |
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| ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation |
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| On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy |
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| Image processing tools for the validation of CryoEM maps |
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| Cryo-EM and Single-Particle Analysis with Scipion |
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| Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins |
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| Algorithmic robustness to preferred orientations in single particle analysis by CryoEM |
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| FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation |
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| Cryo-EM density maps adjustment for subtraction, consensus and sharpening |
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| Advances in xmipp for cryo–electron microscopy: From xmipp to scipion |
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| Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses |
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| Integration of Cryo-EM Model Building Software in Scipion |
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| Automatic local resolution-based sharpening of cryo-EM maps |
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| Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures |
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| Measurement of local resolution in electron tomography |
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| Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening |
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| Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion |
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| Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy |
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| Validation of electron microscopy initial models via small angle X-ray scattering curves |
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| MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps |
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| Map challenge: Analysis using a pair comparison method based on Fourier shell correlation |
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| Using Scipion for stream image processing at Cryo-EM facilities |
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| A new algorithm for high-resolution reconstruction of single particles by electron microscopy |
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| The first single particle analysis Map Challenge: A summary of the assessments |
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| Blind estimation of DED camera gain in Electron Microscopy |
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| ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds |
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| A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy |
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| XTEND: Extending the depth of field in cryo soft X-ray tomography |
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| Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution |
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| Fast and automatic identification of particle tilt pairs based on Delaunay triangulation |
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| Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy |
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| Local analysis of strains and rotations for macromolecular electron microscopy maps |
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| The Electron Microscopy eXchange (EMX) initiative |
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| System models for PET statistical iterative reconstruction: A review |
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| Particle alignment reliability in single particle electron cryomicroscopy: A general approach |
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| MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography |
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| A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function |
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| Fast and accurate conversion of atomic models into electron density maps |
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| Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited |
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| Structures of Adenovirus Incomplete Particles Clarify Capsid Architecture and Show Maturation Changes of Packaging Protein L1 52/55k |
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| Iterative reconstruction for pet scanners with continuous scintillators. |
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| CTF Challenge: Result summary |
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| Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star |
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| Alignment of direct detection device micrographs using a robust Optical Flow approach |
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| A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy |
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| The soft x-ray transform |
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| Efficient initial volume determination from electron microscopy images of single particles |
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| 3D Cryo-Electron Reconstruction of BmrA, a Bacterial Multidrug ABC Transporter in an Inward-Facing Conformation and in a Lipidic Environment |
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| Xmipp 3.0: An improved software suite for image processing in electron microscopy |
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| A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs |
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| Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy |
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| Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques |
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| On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy |
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| FASTDEF: Fast defocus and astigmatism estimation for high-throughput transmission electron microscopy |
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| Epitope insertion at the N-terminal molecular switch of the rabbit hemorrhagic disease virus T=3 capsid protein leads to larger T=4 capsids |
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| Image formation in cellular X-ray microscopy |
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| Non-rigid consistent registration of 2D image sequences |
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| A clustering approach to multireference alignment of single-particle projections in electron microscopy |
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| Structure and Uncoating of Immature Adenovirus |
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| Automatic particle selection from electron micrographs using machine learning techniques |
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| A theoretical model for EM-ML reconstruction algorithms applied to rotating PET scanners |
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| Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs |
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| Image processing for electron microscopy single-particle analysis using XMIPP |
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| Localization of the N-Terminus of Minor Coat Protein IIIa in the Adenovirus Capsid |
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| Volumetric restrictions in single particle 3DEM reconstruction |
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| Electron tomography of complex biological specimens on the Grid |
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| On the nature of 2D crystal unbending |
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| Optimization problems in electron microscopy of single particles |
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| Image processing and 3-D reconstruction in electron microscopy |
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| Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction |
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| Classification of single-projection reconstructions for cryo-electron microscopy data of icosahedral viruses |
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| Maximum-likelihood multi-reference refinement for electron microscopy images |
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| On the suitability of biological structure determination by electron microscopy to grid computing |
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| Grid Computing in structure determination of biological specimens by electron microscope tomography |
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| XMIPP: a new generation of an open-source image processing package for electron microscopy |
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| The potential of grid computing in three-dimensional electron microscopy |
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| Biological structure determination by EM is well suited to grid computing |
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| 3-D reconstruction of 2-D crystals in real space |
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| Transfer function restoration in 3D electron microscopy via iterative data refinement |
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| Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations |
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| Correlation of topographic surface and volume data from three-dimensional electron microscopy |
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| The effect of overabundant projection directions on 3D reconstruction algorithms |
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| Image processing approaches to biological three-dimensional electron microscopy |
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| Discrete tomography in electron microscopy |
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| Zero-loss P-contrast in EFTEM |
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| Automatic Classification of Biological Particles from Electron-microscopy Images Using Conventional and Genetic-algorithm Optimized Learning Vector Quantization |
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| 3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs) |
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| Three-dimensional reconstruction from reduced sets of very noisy images acquired following a single-axis tilt schema: Application of a new three- dimensional reconstruction algorithm and objective comparison with weighted backprojection |
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| Electron tomography of biological specimens |
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| On a new computationally fast image invariant based on bispectral projections |
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| Proposal for a new distributed database of macromolecular and subcellular structures from different areas of microscopy |
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| Xmipp: An image processing package for electron microscopy |
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| CNMA: A European Initiative for OSI Network Management The authors describe the concepts, developments, and achievements of the ESPRIT project Communications Network for Manufacturing Applications in the field of OSI network management. Though being concentrated on LANs in manufacturing environments, the CNMA approach to OSI network management could be applicable to a wide variety of computer networks. |
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| Practical issues on invariant image averaging using the Bispectrum |
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| Pattern recognition and classification of images of biological macromolecules using artificial neural networks |
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