Carazo García, José María Autor

Publicaciones

Identification of incorrectly oriented particles in cryo-EM single particle analysis

  • Méndez J.
  • Garduño E.
  • Carazo J.M.
  • Carlos C.O.

Journal of Structural Biology - 1/9/2021

10.1016/j.jsb.2021.107771

Número de citas: 0 (Scopus)

DeepAlign, a 3D alignment method based on regionalized deep learning for Cryo-EM

  • Jiménez-Moreno A.
  • Střelák D.
  • Filipovič J.
  • Carazo J.M.
  • Sorzano C.O.S.

Journal of Structural Biology - 1/6/2021

10.1016/j.jsb.2021.107712

Número de citas: 0 (Scopus)

Principal component analysis is limited to low-resolution analysis in cryoEM

  • Sorzano C.O.S.
  • Carazo J.M.

Acta Crystallographica Section D: Structural Biology - 1/6/2021

10.1107/s2059798321002291

Número de citas: 0 (Scopus)

Cryo-EM and Single-Particle Analysis with Scipion

  • Jiménez-Moreno A.
  • Del Caño L.
  • Martínez M.
  • Ramírez-Aportela E.
  • Cuervo A.
  • Melero R.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.P.
  • Herreros D.
  • Conesa P.
  • Fonseca Y.
  • Maluenda D.
  • Jiménez de la Morena J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
  • Sorzano C.O.S.
... Ver más Contraer

Journal of visualized experiments : JoVE - 29/5/2021

10.3791/62261

Número de citas: 0 (Scopus)

Algorithmic robustness to preferred orientations in single particle analysis by CryoEM

  • Sorzano C.O.S.
  • Semchonok D.
  • Lin S.C.
  • Lo Y.C.
  • Vilas J.L.
  • Jiménez-Moreno A.
  • Gragera M.
  • Vacca S.
  • Maluenda D.
  • Martínez M.
  • Ramírez-Aportela E.
  • Melero R.
  • Cuervo A.
  • Conesa J.J.
  • Conesa P.
  • Losana P.
  • Caño L.d.
  • de la Morena J.J.
  • Fonseca Y.C.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro F.
  • Herreros D.
  • Kastritis P.L.
  • Marabini R.
  • Bruce B.D.
  • Carazo J.M.
... Ver más Contraer

Journal of Structural Biology - 1/3/2021

10.1016/j.jsb.2020.107695

Número de citas: 0 (Scopus)

FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation

  • Ramírez-Aportela E.
  • Maluenda D.
  • Fonseca Y.C.
  • Conesa P.
  • Marabini R.
  • Heymann J.B.
  • Carazo J.M.
  • Sorzano C.O.S.
... Ver más Contraer

Nature Communications - 1/12/2021

10.1038/s41467-020-20295-w

Número de citas: 2 (Scopus)

Self-assembly and regulation of protein cages from pre-organised coiled-coil modules

  • Lapenta F.
  • Aupič J.
  • Vezzoli M.
  • Strmšek Ž.
  • Da Vela S.
  • Svergun D.I.
  • Carazo J.M.
  • Melero R.
  • Jerala R.
... Ver más Contraer

Nature Communications - 1/12/2021

10.1038/s41467-021-21184-6

Número de citas: 2 (Scopus)

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Sanchez-Garcia R.
  • Gomez-Blanco J.
  • Cuervo A.
  • Carazo J.M.
  • Sorzano C.O.S.
  • Vargas J.

Communications Biology - 1/12/2021

10.1038/s42003-021-02399-1

Número de citas: 2 (Scopus)
Open Access

ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Georges A.d.
  • Abrishami V.
  • Vargas J.

Progress in Biophysics and Molecular Biology - 1/1/2021

10.1016/j.pbiomolbio.2021.01.001

Número de citas: 0 (Scopus)

Integration of Cryo-EM Model Building Software in Scipion

  • Martínez M.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Melero R.
  • Cuervo A.
  • Conesa P.
  • Del Caño L.
  • Fonseca Y.C.
  • Sánchez-García R.
  • Strelak D.
  • Conesa J.J.
  • Fernández-Giménez E.
  • de Isidro F.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Marabini R.
... Ver más Contraer

Journal of chemical information and modeling - 26/5/2020

10.1021/acs.jcim.9b01032

Número de citas: 5 (Web of Science) 7 (Scopus)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 0 (Scopus)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 2 (Web of Science) 4 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

METHODS IN ENZYMOLOGY, VOL 482: CRYO-EM, PART B: 3-D RECONSTRUCTION - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 43 (Web of Science) 49 (Scopus)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)

AN IMAGE PROCESSING APPROACH TO THE SIMULATION OF ELECTRON MICROSCOPY VOLUMES OF ATOMIC STRUCTURES

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
... Ver más Contraer

2014 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP) - 28/1/2014

10.1109/icip.2014.7025420

Número de citas: 0 (Scopus)
Open Access

Extracting and normalizing gene/protein mentions with the flexible and trainable Moara Java library

  • Neves M.
  • Carazo J.
  • Pascual-Montano A.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 25/6/2010

10.1007/978-3-642-13131-8_9

Número de citas: 1 (Scopus)

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano, C. O. S.
  • Iriarte, A.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE

WISP 2009: 6TH IEEE INTERNATIONAL SYMPOSIUM ON INTELLIGENT SIGNAL PROCESSING, PROCEEDINGS - 10/12/2009

10.1109/wisp.2009.5286563

Número de citas: 3 (Scopus)

Introducing robustness to maximum-likelihood refinement of electron-microsopy data

  • Scheres, Sjors H. W.
  • Carazo, Jose-Maria

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY - 10/07/2009

10.1107/s0907444909012049

Número de citas: 6 (Web of Science) 6 (Scopus)

Flexible image registration for the identification of best fitted protein models in 3D-EM maps

  • Fernandez-de-Manuell, Laura
  • Ledesma-Carbayol, Maria J.
  • Atienza-Herrero, Julian
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
... Ver más Contraer

2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4 - 10/9/2008

10.1109/isbi.2008.4541163

Número de citas: 0 (Scopus)

Flexible fitting in 3D-EM with incomplete data on superfamily variability

  • Velazquez-Muriel, Javier A.
  • Carazo, Jose-Maria

JOURNAL OF STRUCTURAL BIOLOGY - 1/05/2007

10.1016/j.jsb.2006.10.014

Número de citas: 19 (Web of Science) 21 (Scopus)

Integrating electron microscopy information into existing distributed annotation systems

  • Macias, J. R.
  • Jimenez-Lozano, N.
  • Carazo, J. M.

JOURNAL OF STRUCTURAL BIOLOGY - 1/05/2007

10.1016/j.jsb.2007.02.004

Número de citas: 11 (Web of Science) 11 (Scopus)

Molecular image registration using mutual information and differential evolution optimization

  • Telenczuk, Bartosz
  • Ledesma-Carbayo, Marta J.
  • Velazquez-Muriel, Javier A.
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
... Ver más Contraer

2006 3RD IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1-3 - 17/11/2006

Número de citas: 4 (Web of Science) 11 (Scopus)
Open Access

Consistent and elastic registration of histological sections using vector-spline regularization

  • Arganda-Carreras, Ignacio
  • Sorzano, Carlos O. S.
  • Marabini, Roberto
  • Carazo, Jose Maria
  • Ortiz-de-Solorzano, Carlos
  • Kybic, Jan
  • Beichel, RR
... Ver más Contraer

COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006

10.1007/11889762_8

Número de citas: 185 (Web of Science) 190 (Scopus)

Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM

  • Velázquez-Muriel J.
  • Carazo J.

2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005

10.1109/csbw.2005.65

Número de citas: 0 (Scopus)

Este autor no tiene patentes.

Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules (Nature Communications, (2021), 12, 1, (939), 10.1038/s41467-021-21184-6)

  • Lapenta F.
  • Aupič J.
  • Vezzoli M.
  • Strmšek Ž.
  • Da Vela S.
  • Svergun D.I.
  • Carazo J.M.
  • Melero R.
  • Jerala R.
... Ver más Contraer

Nature Communications - 1/12/2021

10.1038/s41467-021-21969-9

Número de citas: 0 (Scopus)

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

07/2020

10.26434/chemrxiv.12652997.v2

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

05/2020

10.1101/2020.05.12.069831

  • ORCID

Improvements on marker-free images alignment for electron tomography

  • C.O.S. Sorzano
  • F. de Isidro-Gómez
  • E. Fernández-Giménez
  • D. Herreros
  • S. Marco
  • J.M. Carazo
  • C. Messaoudi
... Ver más Contraer

Journal of Structural Biology: X - 24/05/2020

10.1101/2020.05.22.110445

Número de citas: 0 (Scopus)

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

10/2018

10.1101/433284

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... Ver más Contraer

03/2018

10.1101/279398

  • ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... Ver más Contraer

Proceedings of the National Academy of Sciences of the United States of America - 7/4/2009

Número de citas: 1 (Scopus)

Scopus: 51

Web of Science: 49

Última actualización de los datos: 5/09/21 6:35
Próxima recolección programada: 2/10/21 3:00