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Carazo García, José María Author

Open Access

Grid computing in structure determination of biological specimens by electron microscope tomography

  • Fernández J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • García I.

Grid Computing - 1/12/2004

10.1007/978-3-540-24689-3_22

Cite count: 1 (Scopus)
  • CiteScore: 1.8 (2020)
  • SJR: 0.347 (2004
  • SNIP: 0.851 (2004

SPI-EM: Towards a tool for predicting CATH superfamilies in 3D-EM maps

  • Velazquez-Muriel, JA
  • Sorzano, COS
  • Scheres, SHW
  • Carazo, JM

Journal of Molecular Biology - 28/01/2005

10.1016/j.jmb.2004.11.005 View source

Cite count: 23 (Web of Science) 22 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 8.5 (2020)
  • SJR: 4.147 (2005
  • SNIP: 1.414 (2005
  • SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)

Mining association rules from biological databases

  • Rodríguez A.
  • Carazo J.
  • Trelles O.

Journal of The American Society For Information Science and Technology - 1/03/2005

10.1002/asi.20138

Cite count: 20 (Scopus)

Maximum-likelihood multi-reference refinement for electron microscopy images

  • Scheres, SHW
  • Valle, M
  • Nunez, R
  • Sorzano, COS
  • Marabini, R
  • Herman, GT
  • Carazo, JM
... View more Collapse

JOURNAL OF MOLECULAR BIOLOGY - 22/04/2005

10.1016/j.jmb.2005.02.031 View source

Cite count: 203 (Web of Science) 190 (Scopus)
  • JCR Quartile: Q2 (2005)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.229 (2022)
  • Category normalized Impact: 3.14 (2005)
  • CiteScore: 8.5 (2020)
  • SJR: 4.147 (2005
  • SNIP: 1.414 (2005
  • SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)

Classification of single-projection reconstructions for cryo-electron microscopy data of icosahedral viruses

  • Scheres, S.H.W.
  • Marabini, R.
  • Lanzavecchia, S.
  • Cantele, F.
  • Rutten, T.
  • Fuller, S.D.
  • Carazo, J.M.
  • Burnett, R.M.
  • San Martín, C.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/07/2005

10.1016/j.jsb.2005.04.003 View source

Cite count: 18 (Web of Science) 20 (Scopus)
  • JCR Quartile: Q1 (2005)
  • SJR Quartile: Q1
  • JCR Impact Factor: 3.49 (2022)
  • Category normalized Impact: 0.325 (2005)
  • CiteScore: 5.5 (2020)
  • SJR: 2.846 (2005
  • SNIP: 1.217 (2005
  • SJR Categories: Structural Biology (Q1)

Fast maximum-likelihood refinement of electron microscopy images

  • Scheres, SHW
  • Valle, M
  • Carazo, JM

Bioinformatics - 1/09/2005

10.1093/bioinformatics/bti1140

Cite count: 53 (Web of Science) 49 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 9.9 (2020)
  • SJR: 3.141 (2005
  • SNIP: 2.382 (2005
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)

Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction

  • Sorzano, COS
  • Marabini, R
  • Herman, GT
  • Carazo, JM

Pattern Recognition - 1/12/2005

10.1016/j.patcog.2005.03.013 View source

Cite count: 7 (Web of Science) 7 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 15.7 (2020)
  • SJR: 1.069 (2005
  • SNIP: 2.922 (2005
  • SJR Categories: Artificial Intelligence (Q1); Computer Vision and Pattern Recognition (Q1); Signal Processing (Q1); Software (Q1)
Open Access

Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum

  • Gomez-Llorente, Y
  • Fletcher, RJ
  • Chen, XJS
  • Carazo, JM
  • Martin, CS

Journal of Biological Chemistry - 9/12/2005

10.1074/jbc.m509760200

Cite count: 67 (Web of Science) 70 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.854 (2022)
  • Category normalized Impact: 1.062 (2005)
  • CiteScore: 7.7 (2020)
  • SJR: 4.178 (2005
  • SNIP: 1.351 (2005
  • SJR Categories: Biochemistry (Q1); Cell Biology (Q1); Molecular Biology (Q1)
Open Access

Double hexamer disruption and biochemical activities of Methanobacterium thermoautotrophicum MCM

  • Fletcher, RJ
  • Shen, JP
  • Gomez-Llorente, Y
  • San Martin, C
  • Carazo, JM
  • Chen, XJS

Journal of Biological Chemistry - 23/12/2005

10.1074/jbc.m509773200

Cite count: 40 (Web of Science) 45 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.854 (2022)
  • Category normalized Impact: 0.634 (2005)
  • CiteScore: 7.7 (2020)
  • SJR: 4.178 (2005
  • SNIP: 1.351 (2005
  • SJR Categories: Biochemistry (Q1); Cell Biology (Q1); Molecular Biology (Q1)
Open Access

Discovering semantic features in the literature: a foundation for building functional associations

  • Chagoyen, M
  • Carmona-Saez, P
  • Shatkay, H
  • Carazo, JM
  • Pascual-Montano, A

BMC BIOINFORMATICS - 26/01/2006

10.1186/1471-2105-7-41

Cite count: 59 (Web of Science) 59 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 5.7 (2020)
  • SJR: 1.913 (2006
  • SNIP: 1.214 (2006
  • SJR Categories: Applied Mathematics (Q1); Biochemistry (Q1); Computer Science Applications (Q1); Molecular Biology (Q2); Structural Biology (Q2)
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... View more Collapse

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 View source

Cite count: 1 (Web of Science) 4 (Scopus)
  • CiteScore: 0.8 (2020)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... View more Collapse

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 View source

Cite count: 1 (Web of Science) 1 (Scopus)
  • CiteScore: 1.8 (2020)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 67 (Web of Science) 52 (Scopus)
  • JCR Impact Factor: 1.626 (2010)
  • CiteScore: 2.6 (2020)
  • SJR: 1.408 (2010
  • SNIP: 0.493 (2010
  • JCR 5-year Impact Factor: 2.185
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... View more Collapse

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)
  • SJR Quartile: Q3
  • CiteScore: 2.2 (2020)
  • SJR: 0.751 (2013
  • SNIP: 0.362 (2013
  • SJR Categories: Genetics (Q3); Molecular Biology (Q3)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... View more Collapse

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Cite count: 9 (Web of Science) 4 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.312 (2014)
  • CiteScore: 0.8 (2020)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Cite count: 4 (Web of Science) 3 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.156 (2014)
  • CiteScore: 0.8 (2020)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... View more Collapse

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... View more Collapse

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Cite count: 5 (Web of Science) 1 (Scopus)
  • JCR Quartile: Q2 (2021)
  • Category normalized Impact: 0.595 (2021)
  • CiteScore: 2.2 (2020)
  • SJR: 0.711 (2020
  • SNIP: 0.57 (2020

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

  • Carazo J.M.
  • Carrascosa J.
  • Santisteban A.

1/12/1985

Cite count:

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Cite count:
  • CiteScore: 4.6 (2020)

Parallel architecture for real-time speech recognition in Spanish

  • Alexandres S.
  • Moran J.
  • Carazo J.
  • Santos A.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/12/1990

Cite count: 2 (Scopus)
  • CiteScore: 4.6 (2020)

Image reconstruction on hypercube computers

  • Zapata E.L.
  • Benavides I.
  • Rivera F.F.
  • Bruguera J.D.
  • Carazo J.M.

1/12/1990

Cite count: 4 (Scopus)
Open Access

Mapping strategies for sequential sequence comparison algorithms on LAN-based message passing architectures

  • Trelles-Salazar O.
  • Zapata E.L.
  • Carazo J.M.

Lecture Notes In Computer Science - 1/1/1994

10.1007/bfb0020372

Cite count: 6 (Scopus)
  • CiteScore: 1.8 (2020)

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Cite count:

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

Electron Microscopy 1994, Vols 3a and 3b - 1994

  • ORCID

Electron tomography of biological specimens

  • Marabini R.
  • Carmen San Martin M.
  • Carazo J.

Studies in Health Technology and Informatics - 1/1/1997

10.3233/978-1-60750-874-8-53

Cite count: 2 (Scopus)
  • CiteScore: 1.2 (2020)

Biological sequence analysis on distributed-shared memory multiprocessors

  • Rodriguez A.
  • de la Fraga L.G.
  • Zapata E.L.
  • Carazo J.M.
  • Trelles O.

Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998

10.1109/empdp.1998.647174

Cite count: 1 (Scopus)

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

This author has no patents.

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Cite count: 62 (Scopus)
  • CiteScore: 5 (2020)

New phylogenetic venues opened by a novel implementation of the DNAml algorithm

  • Trelles, O
  • Ceron, C
  • Wang, HC
  • Dopazo, J
  • Carazo, JM

Bioinformatics - 1/07/1998

10.1093/bioinformatics/14.6.544

Cite count: 7 (Web of Science) 8 (Scopus)
  • CiteScore: 9.9 (2020)
Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Cite count: 3 (Web of Science) 4 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 9 (2020)
  • SJR: 4.47 (2004
  • SNIP: 1.507 (2004
  • SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)

Biological structure determination by EM is well suited to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/06/2004

10.1007/bf03040957

Cite count:
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q2
  • JCR Impact Factor: 0.854 (2022)
  • CiteScore: 2.1 (2020)
  • SJR: 0.556 (2004
  • SNIP: 1.19 (2004
  • SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)

On the suitability of biological structure determination by electron microscopy to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/03/2005

10.1007/bf03037653

Cite count: 7 (Web of Science) 6 (Scopus)
  • JCR Quartile: Q3 (2005)
  • SJR Quartile: Q2
  • JCR Impact Factor: 0.5 (2022)
  • Category normalized Impact: 0.442 (2005)
  • CiteScore: 2.1 (2020)
  • SJR: 0.6 (2005
  • SNIP: 1.719 (2005
  • SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... View more Collapse

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Cite count: 1 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 9.432 (2009)
  • CiteScore: 16.2 (2020)
  • SJR: 7.025 (2009
  • SNIP: 2.563 (2009
  • JCR 5-year Impact Factor: 10.312
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... View more Collapse

03/2018

10.1101/279398

  • ORCID

iNEXT: a European facility network to stimulate translational structural biology

  • Rolf Boelens
  • Dmitri Svergun
  • Jan Ellenberg
  • Cusack, Stephen
  • Martin A. Walsh
  • Banci, Lucia
  • Harald Schwalbe
  • Perrakis, Anastassis
  • van Leeuwenhoek, Antoni
  • Vladimir Sklenar
  • Jose Maria Carazo Garcia
  • Hartmut Oschkinat
  • Thompson, Andrew
  • Thunnissen, Marjolein
  • Koster, Bram
  • Gordon Leonard
  • Brutscher, Bernhard
  • Stuart, David I.
  • Poul Nissen
  • Wacklin, Hanna
  • Perczel, Andras
  • Margarida Archer
  • Wierenga, Rik
  • Spyroulias, Georgios A.
  • Sussman, Joel
  • iNEXT Consortium
... View more Collapse

Febs Letters - 1/06/2018

10.1002/1873-3468.13062

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Last data update: 6/29/24 8:36 AM
Next scheduled update: 7/6/24 3:00 AM