Carazo García, José María Author

Open Access

Insights into the molecular architecture of the 26S proteasome

  • Nickell, Stephan
  • Beck, Florian
  • Scheres, Sjors H. W.
  • Korinek, Andreas
  • Foerster, Friedrich
  • Lasker, Keren
  • Mihalache, Oana
  • Sun, Na
  • Nagya, Istvan
  • Sali, Andrej
  • Plitzko, Juergen M.
  • Carazo, Jose-Maria
  • Mann, Matthias
  • Baumeister, Wolfgang
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PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 21/07/2009

10.1073/pnas.0905081106

Cite count: 107 (Web of Science) 110 (Scopus)
Open Access

Integrated analysis of gene expression by association rules discovery

  • Carmona-Saez, P
  • Chagoyen, M
  • Rodriguez, A
  • Trelles, O
  • Carazo, JM
  • Pascual-Montano, A

BMC BIOINFORMATICS - 7/02/2006

10.1186/1471-2105-7-54

Cite count: 71 (Web of Science) 96 (Scopus)

Integrating electron microscopy information into existing Distributed Annotation Systems

  • Macias, J. R.
  • Jimenez-Lozano, N.
  • Carazo, J. M.

Journal of Structural Biology - 1/05/2007

10.1016/j.jsb.2007.02.004

Cite count: 11 (Web of Science) 11 (Scopus)

Integrating human and murine anatomical gene expression data for improved comparisons

  • Jimenez-Lozano, Natalia
  • Segura, Joan
  • Ramon Macias, Jose
  • Vega, Juanjo
  • Maria Carazo, Jose

Bioinformatics - 1/02/2012

10.1093/bioinformatics/btr639

Cite count: 1 (Web of Science) 1 (Scopus)

Integration of Cryo-EM Model Building Software in Scipion

  • Martínez M.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Melero R.
  • Cuervo A.
  • Conesa P.
  • Del Caño L.
  • Fonseca Y.C.
  • Sánchez-García R.
  • Strelak D.
  • Conesa J.J.
  • Fernández-Giménez E.
  • de Isidro F.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Marabini R.
... View more Collapse

Journal of Chemical Information and Modeling - 26/5/2020

10.1021/acs.jcim.9b01032

Cite count: 16 (Web of Science) 8 (Scopus)

Interoperability with Moby 1.0 - It\'s better than sharing your toothbrush!

  • Wilkinson, Mark D.
  • Senger, Martin
  • Kawas, Edward
  • Bruskiewich, Richard
  • Gouzy, Jerome
  • Noirot, Celine
  • Bardou, Philippe
  • Ng, Ambrose
  • Haase, Dirk
  • Saiz, Enrique de Andres
  • Wang, Dennis
  • Gibbons, Frank
  • Gordon, Paul M. K.
  • Sensen, Christoph W.
  • Carrasco, Jose Manuel Rodriguez
  • Fernandez, Jose M.
  • Shen, Lixin
  • Links, Matthew
  • Ng, Michael
  • Opushneva, Nina
  • Neerincx, Pieter B. T.
  • Leunissen, Jack A. M.
  • Ernst, Rebecca
  • Twigger, Simon
  • Usadel, Bjorn
  • Good, Benjamin
  • Wong, Yan
  • Stein, Lincoln
  • Crosby, William
  • Karlsson, Johan
  • Royo, Romina
  • Parraga, Ivan
  • Ramirez, Sergio
  • Gelpi, Josep Lluis
  • Trelles, Oswaldo
  • Pisano, David G.
  • Jimenez, Natalia
  • Kerhornou, Arnaud
  • Rosset, Roman
  • Zamacola, Leire
  • Tarraga, Joaquin
  • Huerta-Cepas, Jaime
  • Carazo, Jose Maria
  • Dopazo, Joaquin
  • Guigo, Roderic
  • Navarro, Arcadi
  • Orozco, Modesto
  • Valencia, Alfonso
  • Claros, M. Gonzalo
  • Perez, Antonio J.
  • Aldana, Jose
  • Rojano, M. Mar
  • Cruz, Raul Fernandez-Santa
  • Navas, Ismael
  • Schiltz, Gary
  • Farmer, Andrew
  • Gessler, Damian
  • Schoof, Heiko
  • Groscurth, Andreas
  • BioMoby Consortium
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Briefings In Bioinformatics - 1/05/2008

10.1093/bib/bbn003

Cite count: 54 (Web of Science) 77 (Scopus)
Open Access

Intracellular nanoparticles mass quantification by near-edge absorption soft X-ray nanotomography

  • Javier Conesa, Jose
  • Oton, Joaquin
  • Chiappi, Michele
  • Maria Carazo, Jose
  • Pereiro, Eva
  • Javier Chichon, Francisco
  • Carrascosa, Jose L.
... View more Collapse

Scientific Reports - 10/03/2016

10.1038/srep22354

Cite count: 22 (Web of Science) 17 (Scopus)

Introducing robustness to maximum-likelihood refinement of electron-microsopy data

  • Scheres, Sjors H. W.
  • Carazo, Jose-Maria

Acta Crystallographica Section D - Structural Biology - 10/07/2009

10.1107/s0907444909012049

Cite count: 7 (Web of Science) 6 (Scopus)

Large T-antigen double hexamers imaged at the simian virus 40 origin of replication

  • Valle, M
  • Gruss, C
  • Halmer, L
  • Carazo, JM
  • Donate, LE

MOLECULAR AND CELLULAR BIOLOGY - 1/01/2000

10.1128/mcb.20.1.34-41.2000

Cite count: 80 (Web of Science) 77 (Scopus)

Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication

  • Gomez-Lorenzo, MG
  • Valle, M
  • Frank, J
  • Gruss, C
  • Sorzano, COS
  • Chen, XS
  • Donate, LE
  • Carazo, JM
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EMBO JOURNAL - 1/12/2003

10.1093/emboj/cdg612 View source

Cite count: 50 (Web of Science) 53 (Scopus)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
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Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 View source

Cite count: 1 (Web of Science) 1 (Scopus)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 67 (Web of Science) 52 (Scopus)

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... View more Collapse

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Cite count: 5 (Web of Science) 1 (Scopus)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... View more Collapse

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Cite count: 9 (Web of Science) 4 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... View more Collapse

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... View more Collapse

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 View source

Cite count: 1 (Web of Science) 4 (Scopus)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... View more Collapse

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Cite count: 4 (Web of Science) 3 (Scopus)

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Cite count:

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

Electron Microscopy 1994, Vols 3a and 3b - 1994

  • ORCID

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Cite count:

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Analysing cryoEM data quality in the post resolution revolution era: Validity criteria

  • Jose Maria Carazo Garcia

European Biophysics Journal With Biophysics Letters - 07/2019

  • ORCID

A new image translational alignment method with an application in electron crystallography

  • Roca, R
  • Danielsson, PE
  • Jose Maria Carazo Garcia
  • Jose-Jesus Fernandez

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
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2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014

10.1109/icip.2014.7025420 View source

Cite count:

A semantic mediation approach for problems in computational molecular biology

  • Chagoyen M.
  • Kurul M.
  • De-Alarcon P.
  • Santini S.
  • Ludäscher B.
  • Carazo J.
  • Gupta A.
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Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003

10.1109/csb.2003.1227339

Cite count:

AutoRes: Structure resolution determination through autocorrelation analysis

  • J. Vargas
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia

3dem Gordon Research Conference 2015 - 2015

  • ORCID

BioImage, the data base of volume images: Update on the first prototype

  • Jose Maria Carazo Garcia
  • Monica Chagoyen
  • Lucini, JL
  • Stelzer, E
  • Lindek, S
  • Fritsch, R
  • Engel, A
  • Heyman, JB
  • Fita, I
  • Susana G Kalko
  • Henn, C
  • Pittet, JJ
  • McNeil, P
  • Rodriquez-Tome, P
  • Shotton, D
  • Boudier, T
  • Machtynger, J
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Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

This author has no patents.

Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Cite count: 3 (Web of Science) 4 (Scopus)

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Cite count: 62 (Scopus)

Biological structure determination by EM is well suited to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/06/2004

10.1007/bf03040957

Cite count:

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... View more Collapse

03/2018

10.1101/279398

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID
Open Access

ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Georges A.d.
  • Abrishami V.
  • Vargas J.

Progress In Biophysics & Molecular Biology - 1/09/2021

10.1016/j.pbiomolbio.2021.01.001

Cite count: 2 (Web of Science) 1 (Scopus)
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... View more Collapse

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Cite count: 1 (Scopus)

Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)

  • Sorzano C.O.S.
  • Vilas J.L.
  • Ramírez-Aportela E.
  • Krieger J.
  • Del Hoyo D.
  • Herreros D.
  • Fernandez-Giménez E.
  • Marchán D.
  • De Isidro Gómez F.
  • Macías J.R.
  • Sánchez I.
  • Del Caño L.
  • Fonseca-Reyna Y.
  • Conesa P.
  • García-Mena A.
  • Burguet J.
  • García Condado J.
  • Méndez García J.
  • Martínez M.
  • Muñoz-Barrutia A.
  • Marabini R.
  • Vargas J.
  • Carazo J.M.
... View more Collapse

FARADAY DISCUSSIONS - 11/11/2022

10.1039/d2fd90074b

Cite count:

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Last data update: 6/29/24 8:36 AM
Next scheduled update: 7/6/24 3:00 AM