Carazo García, José María Author
Introducing robustness to maximum-likelihood refinement of electron-microsopy data
- Scheres, Sjors H. W.
- Carazo, Jose-Maria
Acta Crystallographica Section D - Structural Biology - 10/07/2009
- JCR Impact Factor: 2.257 (2009)
- CiteScore: 5.5 (2015)
- JCR 5-year Impact Factor: 2.013
- JCR Categories: CRYSTALLOGRAPHY
- Web of Science
- ORCID
- Scopus
Intracellular nanoparticles mass quantification by near-edge absorption soft X-ray nanotomography
- Javier Conesa, Jose
- Oton, Joaquin
- Chiappi, Michele
- Maria Carazo, Jose
- Pereiro, Eva
- Javier Chichon, Francisco
- Carrascosa, Jose L.
Scientific Reports - 10/03/2016
- SJR Quartile: Q1
- JCR Impact Factor: 4.259 (2016)
- CiteScore: 7.1 (2020)
- SJR: 1.692 (2016
- SNIP: 1.368 (2016
- JCR 5-year Impact Factor: 4.847
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Interoperability with Moby 1.0 - It\'s better than sharing your toothbrush!
- Wilkinson, Mark D.
- Senger, Martin
- Kawas, Edward
- Bruskiewich, Richard
- Gouzy, Jerome
- Noirot, Celine
- Bardou, Philippe
- Ng, Ambrose
- Haase, Dirk
- Saiz, Enrique de Andres
- Wang, Dennis
- Gibbons, Frank
- Gordon, Paul M. K.
- Sensen, Christoph W.
- Carrasco, Jose Manuel Rodriguez
- Fernandez, Jose M.
- Shen, Lixin
- Links, Matthew
- Ng, Michael
- Opushneva, Nina
- Neerincx, Pieter B. T.
- Leunissen, Jack A. M.
- Ernst, Rebecca
- Twigger, Simon
- Usadel, Bjorn
- Good, Benjamin
- Wong, Yan
- Stein, Lincoln
- Crosby, William
- Karlsson, Johan
- Royo, Romina
- Parraga, Ivan
- Ramirez, Sergio
- Gelpi, Josep Lluis
- Trelles, Oswaldo
- Pisano, David G.
- Jimenez, Natalia
- Kerhornou, Arnaud
- Rosset, Roman
- Zamacola, Leire
- Tarraga, Joaquin
- Huerta-Cepas, Jaime
- Carazo, Jose Maria
- Dopazo, Joaquin
- Guigo, Roderic
- Navarro, Arcadi
- Orozco, Modesto
- Valencia, Alfonso
- Claros, M. Gonzalo
- Perez, Antonio J.
- Aldana, Jose
- Rojano, M. Mar
- Cruz, Raul Fernandez-Santa
- Navas, Ismael
- Schiltz, Gary
- Farmer, Andrew
- Gessler, Damian
- Schoof, Heiko
- Groscurth, Andreas
- BioMoby Consortium
Briefings In Bioinformatics - 1/05/2008
- SJR Quartile: Q1
- CiteScore: 16.6 (2020)
- SJR: 2.045 (2008
- SNIP: 1.589 (2008
- SJR Categories: Information Systems (Q1); Molecular Biology (Q2)
- ORCID
- Scopus
- Web of Science
Integration of Cryo-EM Model Building Software in Scipion
- Martínez M.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Melero R.
- Cuervo A.
- Conesa P.
- Del Caño L.
- Fonseca Y.C.
- Sánchez-García R.
- Strelak D.
- Conesa J.J.
- Fernández-Giménez E.
- de Isidro F.
- Sorzano C.O.S.
- Carazo J.M.
- Marabini R.
Journal of Chemical Information and Modeling - 26/5/2020
- JCR Impact Factor: 4.956 (2020)
- CiteScore: 6.4 (2020)
- SJR: 1.24 (2020
- SNIP: 1.295 (2020
- JCR 5-year Impact Factor: 5.39
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- Scopus
- ORCID
- Web of Science
Integrating human and murine anatomical gene expression data for improved comparisons
- Jimenez-Lozano, Natalia
- Segura, Joan
- Ramon Macias, Jose
- Vega, Juanjo
- Maria Carazo, Jose
Bioinformatics - 1/02/2012
- SJR Quartile: Q1
- JCR Impact Factor: 5.323 (2012)
- CiteScore: 9.9 (2020)
- SJR: 5.275 (2012
- SNIP: 2.054 (2012
- JCR 5-year Impact Factor: 6.911
- JCR Categories: MATHEMATICAL & COMPUTATIONAL BIOLOGY
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- Scopus
- ORCID
- Web of Science
Integrating electron microscopy information into existing Distributed Annotation Systems
- Macias, J. R.
- Jimenez-Lozano, N.
- Carazo, J. M.
Journal of Structural Biology - 1/05/2007
- SJR Quartile: Q1
- CiteScore: 5.5 (2020)
- SJR: 3.196 (2007
- SNIP: 1.173 (2007
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Integrated analysis of gene expression by association rules discovery
- Carmona-Saez, P
- Chagoyen, M
- Rodriguez, A
- Trelles, O
- Carazo, JM
- Pascual-Montano, A
BMC BIOINFORMATICS - 7/02/2006
- SJR Quartile: Q1
- CiteScore: 5.7 (2020)
- SJR: 1.913 (2006
- SNIP: 1.214 (2006
- SJR Categories: Applied Mathematics (Q1); Biochemistry (Q1); Computer Science Applications (Q1); Molecular Biology (Q2); Structural Biology (Q2)
- ORCID
- Scopus
- Web of Science
Insights into the molecular architecture of the 26S proteasome
- Nickell, Stephan
- Beck, Florian
- Scheres, Sjors H. W.
- Korinek, Andreas
- Foerster, Friedrich
- Lasker, Keren
- Mihalache, Oana
- Sun, Na
- Nagya, Istvan
- Sali, Andrej
- Plitzko, Juergen M.
- Carazo, Jose-Maria
- Mann, Matthias
- Baumeister, Wolfgang
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 21/07/2009
- SJR Quartile: Q1
- JCR Impact Factor: 9.432 (2009)
- CiteScore: 16.2 (2020)
- SJR: 7.025 (2009
- SNIP: 2.563 (2009
- JCR 5-year Impact Factor: 10.312
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- ORCID
- Scopus
- Web of Science
Information recovery in missing angular data cases: an approach by the convex projections method in three dimensions
- Jose Maria Carazo Garcia
- José L. Carrascosa
Journal of Microscopy - 01/1987
10.1111/j.1365-2818.1987.tb01313.x
- ORCID
Implementation and experimental evaluation of the constrained ART algorithm on a multicomputer system
- García I.
- Roca J.
- Sanjurjo J.
- Carazo J.
- Zapata E.
Signal Processing - 1/1/1996
- CiteScore: 9.1 (2020)
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- ORCID
- Scopus
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- ORCID
- Scopus
- Web of Science
Using Scipion for Stream Image Processing at CryoEM Facilities
- de la Rosa-Trevin, J. M.
- Gomez-Blanco, J.
- Conesa, P.
- Rancel, Y.
- del Cano, L.
- Arranz, R.
- Chichon, F. J.
- Martin-Benito, J.
- Carroni, M.
- Fleichman, S.
- Lindahl, E.
- Basham, M.
- Clare, D. K.
- Savage, K.
- Siebert, C. A.
- Ashton, A. W.
- Marabini, R.
- Sorzano, C. O. S.
- Carazo, J. M.
Acta Crystallographica Section A - Foundation and Advances - 07/2018
- JCR Impact Factor: 1.878 (2018)
- JCR 5-year Impact Factor: 4.647
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- ORCID
- Web of Science
Two-way clustering of gene expression profiles by sparse matrix factorization
- Pascual-Montano A.
- Carmona-Sáez P.
- Pascual-Marqui R.
- Tirado F.
- Carazo J.
2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005
- SJR Categories: Engineering (miscellaneous)
- ORCID
- Scopus
Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
Three-dimensional domain mapping in the bacteriophage phi 29 connector
- Jose Valpuesta
- Mikel Valle
- Jose-Jesus Fernandez
- Jose Maria Carazo Garcia
- Albar, JP
- Leonor Kremer
- José L. Carrascosa
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Structure of DnaB and DnaB.DnaC complex.
- Carmen San Martín
- Radermacher, M
- Fedtke, B
- Engel, A
- Miles, CS
- Dixon, NE
- Jose Maria Carazo Garcia
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
Stream processing of CryoElectron Microscopy images at the acquisition site
- D. Marchán
- A. García-Mena
- P. Conesa
- Francisco Javier Chichón García
- R. Arranz
- Y. Fonseca-Reyna
- L. del Caño
- I. Sánchez-López
- M. Iceta
- Jose Maria Carazo Garcia
- Carlos Oscar S. Sorzano
Instruct Biennial Structural Biology Conference - 2022
- ORCID
Self-organizing networks for mapping and clustering biological macromolecules images
- Pascual, A
- Montserrat Barcena
- Merelo, JJ
- Jose Maria Carazo Garcia
Artificial Neural Networks In Medicine and Biology - 2000
- ORCID
Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography
- Federico P. de Isidro-Gómez
- de la Morena, Jorge Jimenez
- Pablo Conesa Mingo
- David Herreros
- Fernandez-Gimenez, Estrella
- Fonseca, Yunior C.
- Strelak, David
- J.J. Conesa
- Ana Cuervo
- Patricia Losana
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
This author has no patents.
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- JCR Impact Factor: 7.464 (2021)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 7.913
- JCR Categories: VIROLOGY
- ORCID
- Web of Science
- Scopus
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7.8 (2022)
- SJR: 1.154 (2022
- SNIP: 1.263 (2022
- ORCID
- Web of Science
- Scopus
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- ORCID
- Scopus
- Web of Science
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
- Trelles, O
- Ceron, C
- Wang, HC
- Dopazo, J
- Carazo, JM
Bioinformatics - 1/07/1998
10.1093/bioinformatics/14.6.544
- CiteScore: 9.9 (2020)
- Scopus
- ORCID
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
iNEXT: a European facility network to stimulate translational structural biology
- Rolf Boelens
- Dmitri Svergun
- Jan Ellenberg
- Cusack, Stephen
- Martin A. Walsh
- Banci, Lucia
- Harald Schwalbe
- Perrakis, Anastassis
- van Leeuwenhoek, Antoni
- Vladimir Sklenar
- Jose Maria Carazo Garcia
- Hartmut Oschkinat
- Thompson, Andrew
- Thunnissen, Marjolein
- Koster, Bram
- Gordon Leonard
- Brutscher, Bernhard
- Stuart, David I.
- Poul Nissen
- Wacklin, Hanna
- Perczel, Andras
- Margarida Archer
- Wierenga, Rik
- Spyroulias, Georgios A.
- Sussman, Joel
- iNEXT Consortium
Febs Letters - 1/06/2018
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- ORCID
- Scopus
- Web of Science
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- JCR Impact Factor: 6.7 (2022)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 6.7
- JCR Categories: VIROLOGY
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Research projects at UAL
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador