Carazo García, José María Author
Xmipp 3.0: An improved software suite for image processing in electron microscopy
- de la Rosa-Trevin, J. M.
- Oton, J.
- Marabini, R.
- Zaldivar, A.
- Vargas, J.
- Carazo, J. M.
- Sorzano, C. O. S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2013
10.1016/j.jsb.2013.09.015 View source
- JCR Quartile: Q2 (2013)
- SJR Quartile: Q1
- JCR Impact Factor: 3.369 (2013)
- Category normalized Impact: 5.507 (2013)
- CiteScore: 5.5 (2020)
- SJR: 2.596 (2013
- SNIP: 1.256 (2013
- JCR 5-year Impact Factor: 3.407
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Error analysis of the principal component analysis demodulation algorithm
- Vargas, J.
- Carazo, J. M.
- Sorzano, C. O. S.
APPLIED PHYSICS B-LASERS AND OPTICS - 1/06/2014
10.1007/s00340-013-5610-3 View source
- SJR Quartile: Q1
- JCR Impact Factor: 1.856 (2014)
- CiteScore: 4 (2020)
- SJR: 1.05 (2014
- SNIP: 1.226 (2014
- JCR 5-year Impact Factor: 1.841
- JCR Categories: PHYSICS, APPLIED
- SJR Categories: Physics and Astronomy (miscellaneous) (Q1)
- ORCID
- Scopus
- Web of Science
Efficient initial volume determination from electron microscopy images of single particles
- Vargas, Javier
- Alvarez-Cabrera, Ana-Lucia
- Marabini, Roberto
- Carazo, Jose M.
- Sorzano, C. O. S.
BIOINFORMATICS - 15/10/2014
10.1093/bioinformatics/btu404 View source
- JCR Quartile: Q2 (2014)
- SJR Quartile: Q1
- JCR Impact Factor: 4.981 (2014)
- Category normalized Impact: 1.633 (2014)
- CiteScore: 9.9 (2020)
- SJR: 4.171 (2014
- SNIP: 1.834 (2014
- JCR 5-year Impact Factor: 8.136
- JCR Categories: MATHEMATICAL & COMPUTATIONAL BIOLOGY
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- ORCID
- Scopus
- Web of Science
The soft x-ray transform
- Klukowska, J.
- Herman, G.T.
- Otón, J.
- Marabini, R.
- Carazo, J.-M.
Inverse Problems - 1/12/2014
10.1088/0266-5611/30/12/125015 View source
- JCR Quartile: Q2 (2014)
- SJR Quartile: Q1
- JCR Impact Factor: 1.323 (2022)
- Category normalized Impact: 0.232 (2014)
- CiteScore: 3.7 (2020)
- SJR: 1.252 (2014
- SNIP: 1.397 (2014
- JCR 5-year Impact Factor: 1.95
- JCR Categories: PHYSICS, MATHEMATICAL
- SJR Categories: Applied Mathematics (Q1); Computer Science Applications (Q1); Mathematical Physics (Q1); Signal Processing (Q1); Theoretical Computer Science (Q1)
- ORCID
- Scopus
- Web of Science
Outlier detection for single particle analysis in Electron Microscopy
- Sorzano, C. O. S.
- Vargas, J.
- de la Rosa-Trevin, J. M.
- Zaldivar-Peraza, A.
- Oton, J.
- Abrishami, V.
- Foche, I.
- Marabini, R.
- Caffarena, G.
- Carazo, J. M.
- Ortuno, F
- Rojas, I
Proceedings Iwbbio 2014: International Work-Conference on Bioinformatics and Biomedical Engineering, Vols 1 and 2 - 2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 3.192 (2014)
- Web of Science
- ORCID
A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy
- Sorzano, C.O.S.
- Vargas, J.
- de la Rosa-Trevín, J.M.
- Otón, J.
- Álvarez-Cabrera, A.L.
- Abrishami, V.
- Sesmero, E.
- Marabini, R.
- Carazo, J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/03/2015
10.1016/j.jsb.2015.01.009 View source
- JCR Quartile: Q2 (2015)
- SJR Quartile: Q1
- JCR Impact Factor: 2.57 (2022)
- Category normalized Impact: 0.818 (2015)
- CiteScore: 5.5 (2020)
- SJR: 3.448 (2015
- SNIP: 1.109 (2015
- JCR 5-year Impact Factor: 3.067
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Alignment of direct detection device micrographs using a robust Optical Flow approach
- Abrishami, Vahid
- Vargas, Javier
- Li, Xueming
- Cheng, Yifan
- Marabini, Roberto
- Sanchez Sorzano, Carlos Oscar
- Maria Carazo, Jose
JOURNAL OF STRUCTURAL BIOLOGY - 1/03/2015
10.1016/j.jsb.2015.02.001 View source
- SJR Quartile: Q1
- JCR Impact Factor: 2.57 (2015)
- CiteScore: 5.5 (2020)
- SJR: 3.448 (2015
- SNIP: 1.109 (2015
- JCR 5-year Impact Factor: 3.067
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- ORCID
- Web of Science
- Scopus
Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star
- Oton, Joaquin
- Sorzano, Carlos Oscar S.
- Marabini, Roberto
- Pereiro, Eva
- Carazo, Jose M.
OPTICS EXPRESS - 20/04/2015
10.1364/oe.23.009567 View source
- SJR Quartile: Q1
- JCR Impact Factor: 3.148 (2015)
- CiteScore: 7.2 (2020)
- SJR: 1.91 (2015
- SNIP: 1.651 (2015
- JCR 5-year Impact Factor: 3.25
- JCR Categories: OPTICS
- SJR Categories: Atomic and Molecular Physics, and Optics (Q1)
- ORCID
- Scopus
- Web of Science
CTF Challenge: Result summary
- Marabini, R.
- Carragher, B.
- Chen, S.
- Chen, J.
- Cheng, A.
- Downing, K.H.
- Frank, J.
- Grassucci, R.A.
- Bernard Heymann, J.
- Jiang, W.
- Jonic, S.
- Liao, H.Y.
- Ludtke, S.J.
- Patwari, S.
- Piotrowski, A.L.
- Quintana, A.
- Sorzano, C.O.S.
- Stahlberg, H.
- Vargas, J.
- Voss, N.R.
- Chiu, W.
- Carazo, J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/06/2015
10.1016/j.jsb.2015.04.003 View source
- SJR Quartile: Q1
- JCR Impact Factor: 2.57 (2015)
- CiteScore: 5.5 (2020)
- SJR: 3.448 (2015
- SNIP: 1.109 (2015
- JCR 5-year Impact Factor: 3.067
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Using neighborhood cohesiveness to infer interactions between protein domains
- Segura, Joan
- Sorzano, C. O. S.
- Cuenca-Alba, Jesus
- Aloy, Patrick
- Carazo, J. M.
Bioinformatics - 1/08/2015
10.1093/bioinformatics/btv188 View source
- SJR Quartile: Q1
- JCR Impact Factor: 5.766 (2015)
- CiteScore: 9.9 (2020)
- SJR: 4.97 (2015
- SNIP: 2.178 (2015
- JCR 5-year Impact Factor: 7.685
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- ORCID
- Scopus
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- ORCID
- Scopus
- Web of Science
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.
- Carazo J.
ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988
- CiteScore: 4.6 (2020)
Parallel architecture for real-time speech recognition in Spanish
- Alexandres S.
- Moran J.
- Carazo J.
- Santos A.
ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/12/1990
- CiteScore: 4.6 (2020)
Image reconstruction on hypercube computers
- Zapata E.L.
- Benavides I.
- Rivera F.F.
- Bruguera J.D.
- Carazo J.M.
1/12/1990
Mapping strategies for sequential sequence comparison algorithms on LAN-based message passing architectures
- Trelles-Salazar O.
- Zapata E.L.
- Carazo J.M.
Lecture Notes In Computer Science - 1/1/1994
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
3D reconstruction of macromolecules on multiprocessors
- Ujaldón M.
- Asenjo R.
- Zapata E.L.
- Cabaleiro J.C.
- Carazo J.M.
Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994
- Scopus
- ORCID
3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING
- Carmen San Martín
- STAMFORD, NPJ
- DAMMEROVA, N
- DIXON, NE
- Jose Maria Carazo Garcia
Electron Microscopy 1994, Vols 3a and 3b - 1994
- ORCID
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1.2 (2020)
- Scopus
- ORCID
Biological sequence analysis on distributed-shared memory multiprocessors
- Rodriguez A.
- de la Fraga L.G.
- Zapata E.L.
- Carazo J.M.
- Trelles O.
Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998
- Scopus
- ORCID
This author has no patents.
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
- Trelles, O
- Ceron, C
- Wang, HC
- Dopazo, J
- Carazo, JM
Bioinformatics - 1/07/1998
10.1093/bioinformatics/14.6.544
- CiteScore: 9.9 (2020)
- Scopus
- ORCID
- Web of Science
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- SJR Quartile: Q1
- CiteScore: 9 (2020)
- SJR: 4.47 (2004
- SNIP: 1.507 (2004
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Web of Science
- Scopus
- ORCID
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Web of Science
- ORCID
- Scopus
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- ORCID
- Scopus
- Web of Science
Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009
- SJR Quartile: Q1
- JCR Impact Factor: 9.432 (2009)
- CiteScore: 16.2 (2020)
- SJR: 7.025 (2009
- SNIP: 2.563 (2009
- JCR 5-year Impact Factor: 10.312
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
iNEXT: a European facility network to stimulate translational structural biology
- Rolf Boelens
- Dmitri Svergun
- Jan Ellenberg
- Cusack, Stephen
- Martin A. Walsh
- Banci, Lucia
- Harald Schwalbe
- Perrakis, Anastassis
- van Leeuwenhoek, Antoni
- Vladimir Sklenar
- Jose Maria Carazo Garcia
- Hartmut Oschkinat
- Thompson, Andrew
- Thunnissen, Marjolein
- Koster, Bram
- Gordon Leonard
- Brutscher, Bernhard
- Stuart, David I.
- Poul Nissen
- Wacklin, Hanna
- Perczel, Andras
- Margarida Archer
- Wierenga, Rik
- Spyroulias, Georgios A.
- Sussman, Joel
- iNEXT Consortium
Febs Letters - 1/06/2018
- ORCID
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
-
ORCID
-
Web of Science ResearcherID
-
Scopus Author ID
-
Dialnet id
Research projects at UAL
-
Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador