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Carazo García, José María Author

Open Access

GENERAL MORPHOLOGY AND CAPSID FINE-STRUCTURE OF AFRICAN SWINE FEVER VIRUS-PARTICLES

  • CARRASCOSA, JL
  • CARAZO, JM
  • CARRASCOSA, AL
  • GARCIA, N
  • SANTISTEBAN, A
  • VINUELA, E

VIROLOGY - 15/1/1984

10.1016/0042-6822(84)90100-4

Cite count: 123 (Web of Science) 90 (Scopus)
  • CiteScore: 6.2 (2020)
Open Access

Structural localizaton of the proteins of the head to tail connecting region of bacteriophage φ29

  • CARRASCOSA, JL
  • CARAZO, JM
  • GARCIA, N

Virology - 15/01/1983

10.1016/0042-6822(83)90296-9

Cite count: 30 (Web of Science) 26 (Scopus)
  • CiteScore: 6.2 (2020)
Open Access

Structure of phage φ29 connector protein assembled in Vivo

  • CARRASCOSA, JL
  • CARAZO, JM
  • BANEZ, C
  • SANTISTEBAN, A

Virology - 1/03/1985

10.1016/0042-6822(85)90251-x

Cite count: 30 (Web of Science) 24 (Scopus)
  • CiteScore: 6.2 (2020)

3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs)

  • Marabini, R.
  • Herman, G.T.
  • Carazo, J.M.

Ultramicroscopy - 1/04/1998

10.1016/s0304-3991(97)00127-7 View source

Cite count: 122 (Web of Science) 132 (Scopus)
  • CiteScore: 5 (2020)

Detection, classification and 3D reconstruction of biological macromolecules on hypercube computers

  • CARAZO, JM
  • BENAVIDES, I
  • RIVERA, FF
  • ZAPATA, EL

Ultramicroscopy - 01/1992

10.1016/0304-3991(92)90232-9

Cite count: 7 (Web of Science)

A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function

  • Abrishami, V.
  • Bilbao-Castro, J. R.
  • Vargas, J.
  • Marabini, R.
  • Carazo, J. M.
  • Sorzano, C. O. S.

Ultramicroscopy - 1/10/2015

10.1016/j.ultramic.2015.05.018 View source

Cite count: 23 (Web of Science) 17 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.874 (2015)
  • CiteScore: 5 (2020)
  • SJR: 2.066 (2015
  • SNIP: 1.304 (2015
  • JCR 5-year Impact Factor: 2.63
  • JCR Categories: MICROSCOPY
  • SJR Categories: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)

A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment

  • Velazquez-Muriel, JA
  • Sorzano, COS
  • Fernandez, JJ
  • Carazo, JM

Ultramicroscopy - 1/07/2003

10.1016/s0304-3991(02)00377-7 View source

Cite count: 45 (Web of Science) 44 (Scopus)
  • JCR Quartile: Q2 (2003)
  • SJR Quartile: Q1
  • JCR Impact Factor: 1.665 (2022)
  • Category normalized Impact: 1.715 (2003)
  • CiteScore: 5 (2020)
  • SJR: 1.365 (2003
  • SNIP: 1.725 (2003
  • SJR Categories: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)

Normalizing projection images: A study of image normalizing procedures for single particle three-dimensional electron microscopy

  • Sorzana, COS
  • de la Fraga, LG
  • Clackdoyle, R
  • Carazo, JM

Ultramicroscopy - 1/11/2004

10.1016/j.ultramic.2004.04.004 View source

Cite count: 25 (Web of Science) 24 (Scopus)
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.215 (2022)
  • Category normalized Impact: 0.958 (2004)
  • CiteScore: 5 (2020)
  • SJR: 1.482 (2004
  • SNIP: 1.646 (2004
  • SJR Categories: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)

Analysis of structural variability within two-dimensional biological crystals by a combination of patch averaging techniques and self organizing maps

  • Fernandez, JJ
  • Carazo, JM

Ultramicroscopy - 1/09/1996

10.1016/s0304-3991(96)00063-0

Cite count: 13 (Web of Science) 13 (Scopus)
  • CiteScore: 5 (2020)

A new phase consistency criterion and its application in electron crystallography

  • He, WZ
  • Carazo, JM
  • Fernandez, JJ

Ultramicroscopy - 1/10/2000

10.1016/s0304-3991(00)00047-4

Cite count: 1 (Web of Science) 1 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 5 (2020)
  • SJR: 1.354 (2000
  • SNIP: 1.044 (2000
  • SJR Categories: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... View more Collapse

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Cite count: 5 (Web of Science) 1 (Scopus)
  • JCR Quartile: Q2 (2021)
  • Category normalized Impact: 0.595 (2021)
  • CiteScore: 2.2 (2020)
  • SJR: 0.711 (2020
  • SNIP: 0.57 (2020

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 67 (Web of Science) 52 (Scopus)
  • JCR Impact Factor: 1.626 (2010)
  • CiteScore: 2.6 (2020)
  • SJR: 1.408 (2010
  • SNIP: 0.493 (2010
  • JCR 5-year Impact Factor: 2.185
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods For Three-dimensional Visualization of Structures In The Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... View more Collapse

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... View more Collapse

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Cite count: 9 (Web of Science) 4 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.312 (2014)
  • CiteScore: 0.8 (2020)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Cite count: 4 (Web of Science) 3 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.156 (2014)
  • CiteScore: 0.8 (2020)

Outlier detection for single particle analysis in Electron Microscopy

  • Sorzano, C. O. S.
  • Vargas, J.
  • de la Rosa-Trevin, J. M.
  • Zaldivar-Peraza, A.
  • Oton, J.
  • Abrishami, V.
  • Foche, I.
  • Marabini, R.
  • Caffarena, G.
  • Carazo, J. M.
  • Ortuno, F
  • Rojas, I
... View more Collapse

Proceedings Iwbbio 2014: International Work-Conference On Bioinformatics and Biomedical Engineering, Vols 1 and 2 - 2014

Cite count: 10 (Web of Science)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 3.192 (2014)

3D reconstruction of 2D crystals from projections in real space

  • Marabini, R
  • Herman, GT
  • Sorzano, COS
  • Carazo, JM
  • Fernandez, JJ
  • Matej, S
  • IEEE
... View more Collapse

Proceedings - International Symposium On Biomedical Imaging (isbi) - 1/1/2002

10.1109/isbi.2002.1029351 View source

Cite count: 1 (Scopus)

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R.
  • Herman G.
  • Sorzano C.
  • Carazo J.

Proceedings - International Symposium On Biomedical Imaging (isbi) - 1/1/2002

10.1109/isbi.2002.1029339 View source

Cite count: 5 (Scopus)

Grid computing in 3D-EM image processing using Xmipp

  • Scheres, SHW
  • Merino, AJ
  • Sorzano, COS
  • Carazo, JM
  • IEEE Comp Soc

Proceedings - Ieee Symposium On Computer-based Medical Systems - 10/11/2005

10.1109/cbms.2005.60 View source

Cite count: 1 (Web of Science) 3 (Scopus)
  • CiteScore: 1.8 (2020)
  • SJR: 0.194 (2005
  • SNIP: 0.374 (2005

Parallelization and comparison of 3D iterative reconstruction algorithms

  • Bilbao-Castro J.
  • Carazo J.
  • Fernández J.
  • García I.

Proceedings - Euromicro Conference On Parellel, Distribeted and Network-based Proceeding - 12/7/2004

10.1109/empdp.2004.1271433

Cite count: 5 (Scopus)
  • SJR Categories: Engineering (miscellaneous)

Image databases: What are they and what do they bring to microscopy

  • Carazo J.M.
  • De Alarcón P.
  • Chagoyen M.

Microscopy and Microanalysis - 1/08/2003

10.1017/s1431927603447855

Cite count:
  • SJR Quartile: Q3
  • CiteScore: 2.8 (2020)
  • SJR: 0.208 (2003
  • SNIP: 0.412 (2003
  • SJR Categories: Instrumentation (Q3)

In the quest of order: The role of pattern recognition in microscopy image analysis

  • Carazo J.M.

Microscopy and Microanalysis - 1/09/2003

10.1017/s1431927603000047

Cite count:
  • SJR Quartile: Q3
  • CiteScore: 2.8 (2020)
  • SJR: 0.208 (2003
  • SNIP: 0.412 (2003
  • SJR Categories: Instrumentation (Q3)

Extracting and searching for structural information: A multiresolution approach

  • Jimenez-Lozano, N
  • Monica Chagoyen
  • De-Alarcon, PA
  • Jose Maria Carazo Garcia

Methods In Proteome and Protein Analysis - 2004

  • ORCID
Open Access

Extracting and normalizing gene/protein mentions with the flexible and trainable Moara Java library

  • Neves M.
  • Carazo J.
  • Pascual-Montano A.

Lecture Notes In Computer Science - 25/6/2010

10.1007/978-3-642-13131-8_9

Cite count: 1 (Scopus)
  • JCR Impact Factor: 1.433 (2010)
  • CiteScore: 1.8 (2020)
  • SJR: 0.322 (2010
  • SNIP: 0.674 (2010
  • JCR 5-year Impact Factor: 1.27
  • JCR Categories: COMPUTER SCIENCE, INFORMATION SYSTEMS
Open Access

Mapping strategies for sequential sequence comparison algorithms on LAN-based message passing architectures

  • Trelles-Salazar O.
  • Zapata E.L.
  • Carazo J.M.

Lecture Notes In Computer Science - 1/1/1994

10.1007/bfb0020372

Cite count: 6 (Scopus)
  • CiteScore: 1.8 (2020)

This author has no patents.

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... View more Collapse

05/2020

10.1101/2020.05.12.069831

  • ORCID

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... View more Collapse

03/2018

10.1101/279398

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v2

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Cite count: 62 (Scopus)
  • CiteScore: 5 (2020)
Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Cite count: 3 (Web of Science) 4 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 9 (2020)
  • SJR: 4.47 (2004
  • SNIP: 1.507 (2004
  • SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
Open Access

A review of resolution measures and related aspects in 3D Electron Microscopy

  • Sorzano CO
  • Vargas J
  • Otón J
  • Abrishami V
  • de la Rosa-Trevín JM
  • Gómez-Blanco J
  • Vilas JL
  • Marabini R
  • Carazo JM
... View more Collapse

Progress In Biophysics & Molecular Biology - 1/03/2017

10.1016/j.pbiomolbio.2016.09.005 View source

Cite count: 25 (Web of Science) 21 (Scopus)
  • JCR Quartile: Q2 (2017)
  • SJR Quartile: Q1
  • JCR Impact Factor: 3.427 (2022)
  • Category normalized Impact: 0.501 (2017)
  • CiteScore: 5.8 (2020)
  • SJR: 1.446 (2017
  • SNIP: 1.236 (2017
  • JCR 5-year Impact Factor: 3.125
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
  • SJR Categories: Biophysics (Q1); Molecular Biology (Q2)

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Last data update: 5/18/24 3:28 AM
Next scheduled update: 5/25/24 3:00 AM