Carazo García, José María Author
Volumetric constraints in 3D tomography applied to electron microscopy
- Marabini R.
- Herman G.
- Sorzano C.
- Carazo J.
2002 Ieee International Symposium on Biomedical Imaging, Proceedings - 1/1/2002
10.1109/isbi.2002.1029339 View source
- Scopus
- ORCID
- Web of Science
3D reconstruction of 2D crystals from projections in real space
2002 Ieee International Symposium on Biomedical Imaging, Proceedings - 1/1/2002
10.1109/isbi.2002.1029351 View source
- Scopus
- ORCID
- Web of Science
Image processing for Cellular tomography using soft X-rays
- Sorzano, C. O. S.
- Oton, J.
- Cuenca, J.
- Zaldivar-Perez, A.
- Caffarena, G.
- Sanchez-Jimenez, J.
- Messaoudi, C.
- Marco, S.
- Marabini, R.
- Carazo, J. M.
- IEEE
2012 9th Ieee International Symposium on Biomedical Imaging (Isbi) - 2012
- ORCID
- Web of Science
The Molecular Control of Calcitonin Receptor Signaling
- Dal Maso E.
- Glukhova A.
- Zhu Y.
- Garcia-Nafria J.
- Tate C.G.
- Atanasio S.
- Reynolds C.A.
- Ramírez-Aportela E.
- Carazo J.M.
- Hick C.A.
- Furness S.G.B.
- Hay D.L.
- Liang Y.L.
- Miller L.J.
- Christopoulos A.
- Wang M.W.
- Wootten D.
- Sexton P.M.
ACS Pharmacology and Translational Science - 8/2/2019
- Scopus
- ORCID
- Web of Science
New Tools and Pipelines for Continuous Heterogeneity Analysis from Cryo-EM using Normal Modes and 3D Zernike Polynomials
- Krieger, J.
- Herreros, D.
- Sorzano, C. O. S.
- Carazo, J. M.
Acta Crystallographica A-Foundation and Advances - 08/2022
- JCR Impact Factor: 1.8 (2022)
- JCR 5-year Impact Factor: 2.2
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
Introducing robustness to maximum-likelihood refinement of electron-microsopy data
- Scheres, Sjors H. W.
- Carazo, Jose-Maria
Acta Crystallographica Section D-Biological Crystallography - 10/07/2009
- JCR Impact Factor: 2.257 (2009)
- CiteScore: 5.5 (2015)
- JCR 5-year Impact Factor: 2.013
- JCR Categories: CRYSTALLOGRAPHY
- Scopus
- ORCID
- Web of Science
On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy
- Marabini, R.
- MacIas, J.R.
- Vargas, J.
- Quintana, A.
- Sorzano, C.O.S.
- Carazo, J.M.
Acta Crystallographica Section D: Biological Crystallography - 1/05/2013
10.1107/s0907444913007038 View source
- JCR Impact Factor: 7.232 (2013)
- CiteScore: 5.5 (2015)
- JCR 5-year Impact Factor: 9.416
- JCR Categories: CRYSTALLOGRAPHY
- Scopus
- ORCID
- Web of Science
Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
- Herreros D.
- Krieger J.M.
- Fonseca Y.
- Conesa P.
- Harastani M.
- Vuillemot R.
- Hamitouche I.
- Serrano Gutiérrez R.
- Gragera M.
- Melero R.
- Jonic S.
- Carazo J.M.
- Sorzano C.O.S.
Acta crystallographica. Section D, Structural biology - 1/7/2023
- CiteScore: 7.5 (2022)
- SJR: 3.87 (2022
- SNIP: 1.47 (2022
- Scopus
- ORCID
- Web of Science
Principal component analysis is limited to low-resolution analysis in cryoEM
- Sorzano C.O.S.
- Carazo J.M.
Acta Crystallographica Section D Structural Biology - 1/06/2021
- JCR Impact Factor: 5.699 (2021)
- JCR 5-year Impact Factor: 6.009
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion
- Maluenda D.
- Majtner T.
- Horvath P.
- Vilas J.
- Jiménez-Moreno A.
- Mota J.
- Ramírez-Aportela E.
- Sánchez-García R.
- Conesa P.
- Del Caño L.
- Rancel Y.
- Fonseca Y.
- Martínez M.
- Sharov G.
- García C.
- Strelak D.
- Melero R.
- Marabini R.
- Carazo J.
- Sorzano C.
Acta Crystallographica Section D-Structural Biology - 1/10/2019
- JCR Quartile: Q2 (2019)
- SJR Quartile: Q1
- JCR Impact Factor: 5.266 (2019)
- Category normalized Impact: 0.902 (2019)
- CiteScore: 6.6 (2019)
- SJR: 3.906 (2019
- SNIP: 1.429 (2019
- JCR 5-year Impact Factor: 3.181
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM
- Velázquez-Muriel J.
- Carazo J.
2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005
- SJR Categories: Engineering (miscellaneous)
- Scopus
- ORCID
Two-way clustering of gene expression profiles by sparse matrix factorization
- Pascual-Montano A.
- Carmona-Sáez P.
- Pascual-Marqui R.
- Tirado F.
- Carazo J.
2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005
- SJR Categories: Engineering (miscellaneous)
- Scopus
- ORCID
Molecular image registration using mutual information and differential evolution optimization
- Telenczuk, Bartosz
- Ledesma-Carbayo, Marta J.
- Velazquez-Muriel, Javier A.
- Sorzano, Carlos O. S.
- Carazo, Jose-Maria
- Santos, Andres
- IEEE
2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano To Macro - Proceedings - 17/11/2006
- Scopus
- ORCID
- Web of Science
Flexible image registration for the identification of best fitted protein models in 3D-EM maps
- Fernandez-de-Manuell, Laura
- Ledesma-Carbayol, Maria J.
- Atienza-Herrero, Julian
- Sorzano, Carlos O. S.
- Carazo, Jose-Maria
- Santos, Andres
- IEEE
2008 5th Ieee International Symposium On Biomedical Imaging: From Nano To Macro, Proceedings, Isbi - 10/05/2008
10.1109/isbi.2008.4541163 View source
- Scopus
- ORCID
- Web of Science
Extraction of biomedical events using case-based reasoning
- Mariana Neves
- Jose Maria Carazo Garcia
- Pascual-Montano, Alberto
2009 Biomedical Natural Language Processing Workshop, Bionlp 2009 - Companion Volume: Shared Task On Event Extraction - 2009
- ORCID
Modeling shape and topology of 3D images of biological specimens
- De-Alarcón P.
- Pascual-Montano A.
- Gupta A.
- Carazo J.
2014 22nd International Conference On Pattern Recognition (icpr) - 1/12/2002
- CiteScore: 2.9 (2019)
- SJR: 0.32 (2002
- SNIP: 0.954 (2002
- SJR Categories: Computer Vision and Pattern Recognition
- Scopus
- ORCID
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 View source
- SJR Categories: Computer Vision and Pattern Recognition
- Scopus
- ORCID
- Web of Science
AutoRes: Structure resolution determination through autocorrelation analysis
- J. Vargas
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
3dem Gordon Research Conference 2015 - 2015
- ORCID
Evolutionary genomics of SARS-CoV-2: key for viral success
- Álvarez-Herrera, M.
- Jose Maria Carazo Garcia
- Comas I
- Coscollà, M.
- Santiago F. Elena
- Francés-Gómez, C.
- Franco, M.L.
- García Rasines, D.
- Geller, R.
- Carmen Gil
- Fernando Gonzalez-Candelas
- Hillung, J.
- José Luis Llácer
- Marina, A.
- Marqués, M.C.
- Naveiro Flores, R.
- Ríos, D.
- Rodríguez Santana, S.
- Paula Ruiz-Rodriguez
- Carlos Oscar S. Sorzano
- Ulzurum, E.
- Vidal, M.
44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022
- ORCID
Mesa redonda sobre investigadores y Ciencia Abierta
- Alonso, F.
- Emilio Cano
- María P. Martín
- Jose Maria Carazo Garcia
- Jan Thiele
5as Jornadas de Análisis de la Red de Bibliotecas y Archivos del Csic. Bibliotecas y Archivos del Csic Por la Ciencia Abierta: Presente y Futuro - 2019
- ORCID
This author has no patents.
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- JCR Impact Factor: 4.799 (2021)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.907
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- SJR Quartile: Q1
- CiteScore: 9 (2020)
- SJR: 4.47 (2004
- SNIP: 1.507 (2004
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M
- Sorzano COS
- Des Georges A
- Carazo JM
- Vargas J
08/2018
- ORCID
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador