Carazo García, José María Author
XTEND: Extending the depth of field in cryo soft X-ray tomography
- Otón J.
- Pereiro E.
- Conesa J.
- Chichón F.
- Luque D.
- Rodríguez J.
- Pérez-Berná A.
- Sorzano C.
- Klukowska J.
- Herman G.
- Vargas J.
- Marabini R.
- Carrascosa J.
- Carazo J.
Scientific Reports - 4/04/2017
- JCR Quartile: Q1 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 4.122 (2022)
- Category normalized Impact: 0.886 (2017)
- CiteScore: 7.1 (2020)
- SJR: 1.533 (2017
- SNIP: 1.263 (2017
- JCR 5-year Impact Factor: 4.609
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- ORCID
- Web of Science
- Scopus
Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors
- Martinez, Marta
- Sorzano, Carlos O. S.
- Pascual-Montano, Alberto
- Carazo, Jose M.
PLoS One - 24/05/2017
10.1371/journal.pone.0178316 View source
- SJR Quartile: Q1
- JCR Impact Factor: 2.766 (2017)
- CiteScore: 5.3 (2020)
- SJR: 1.164 (2017
- SNIP: 1.15 (2017
- JCR 5-year Impact Factor: 3.352
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Agricultural and Biological Sciences (miscellaneous) (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1)
- ORCID
- Web of Science
- Scopus
Quantitative analysis of 3D alignment quality: Its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas, J.
- Melero, R.
- Gomez-Blanco, J.
- Carazo, J. M.
- Sorzano, C. O. S.
Scientific Reports - 24/07/2017
10.1038/s41598-017-06526-z View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 4.122 (2022)
- Category normalized Impact: 0.597 (2017)
- CiteScore: 7.1 (2020)
- SJR: 1.533 (2017
- SNIP: 1.263 (2017
- JCR 5-year Impact Factor: 4.609
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- ORCID
- Web of Science
- Scopus
Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap
- Albanese, Pascal
- Melero, Roberto
- Engel, Benjamin D.
- Grinzato, Alessandro
- Berto, Paola
- Manfredi, Marcello
- Chiodoni, Angelica
- Vargas, Javier
- Sanchez Sorzano, Carlos Oscar
- Marengo, Emilio
- Saracco, Guido
- Zanotti, Giuseppe
- Carazo, Jose-Maria
- Pagliano, Cristina
Scientific Reports - 30/08/2017
10.1038/s41598-017-10700-8 View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 4.122 (2022)
- Category normalized Impact: 0.916 (2017)
- CiteScore: 7.1 (2020)
- SJR: 1.533 (2017
- SNIP: 1.263 (2017
- JCR 5-year Impact Factor: 4.609
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- ORCID
- Web of Science
- Scopus
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
- Sorzano C.
- Vargas J.
- Otón J.
- De La Rosa-Trevín J.
- Vilas J.
- Kazemi M.
- Melero R.
- Del Caño L.
- Cuenca J.
- Conesa P.
- Gómez-Blanco J.
- Marabini R.
- Carazo J.
Biomed Research International - 1/1/2017
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 2.583 (2022)
- Category normalized Impact: 0.428 (2017)
- CiteScore: 4.1 (2020)
- SJR: 0.935 (2017
- SNIP: 1.034 (2017
- JCR 5-year Impact Factor: 2.931
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1); Immunology and Microbiology (miscellaneous) (Q2)
- Scopus
- ORCID
- Web of Science
ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds
- Cuenca-Alba J.
- del Cano L.
- Gómez Blanco J.
- de la Rosa Trevín J.
- Conesa Mingo P.
- Marabini R.
- Carlos C.
- Carazo J.
Journal of Structural Biology - 1/10/2017
- SJR Quartile: Q1
- JCR Impact Factor: 3.433 (2017)
- CiteScore: 5.5 (2020)
- SJR: 3.948 (2017
- SNIP: 0.97 (2017
- JCR 5-year Impact Factor: 3.489
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo
- Ljubetic, Ajasja
- Lapenta, Fabio
- Gradisar, Helena
- Drobnak, Igor
- Aupic, Jana
- Strmsek, Ziga
- Lainscek, Dusko
- Hafner-Bratkovic, Iva
- Majerle, Andreja
- Krivec, Nusa
- Bencina, Mojca
- Pisanski, Tomaz
- Velickovic, Tanja Cirkovic
- Round, Adam
- Maria Carazo, Jose
- Melero, Roberto
- Jerala, Roman
NATURE BIOTECHNOLOGY - 1/11/2017
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 35.724 (2022)
- Category normalized Impact: 5.208 (2017)
- CiteScore: 37.4 (2020)
- SJR: 18.252 (2017
- SNIP: 6.291 (2017
- JCR 5-year Impact Factor: 43.271
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Applied Microbiology and Biotechnology (Q1); Bioengineering (Q1); Biomedical Engineering (Q1); Biotechnology (Q1); Molecular Medicine (Q1)
- ORCID
- Scopus
- Web of Science
3DBIONOTES v2.0: A web server for the automatic annotation of macromolecular structures
- Segura, Joan
- Sanchez-Garcia, Ruben
- Martinez, Marta
- Cuenca-Alba, Jesus
- Tabas-Madrid, Daniel
- Sorzano, C. O. S.
- Carazo, J. M.
Bioinformatics - 15/11/2017
10.1093/bioinformatics/btx483 View source
- SJR Quartile: Q1
- JCR Impact Factor: 5.481 (2017)
- CiteScore: 9.9 (2020)
- SJR: 6.14 (2017
- SNIP: 2.546 (2017
- JCR 5-year Impact Factor: 8.561
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- ORCID
- Scopus
- Web of Science
3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures
- Sanchez-Garcia, Ruben
- Sanchez Sorzano, Carlos Oscar
- Maria Carazo, Jose
- Segura, Joan
MOLECULES - 1/12/2017
10.3390/molecules22122230 View source
- JCR Quartile: Q1 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 2.468 (2022)
- Category normalized Impact: 1.456 (2017)
- CiteScore: 3.4 (2020)
- SJR: 0.818 (2018
- SNIP: 1.19 (2018
- JCR 5-year Impact Factor: 3.268
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Analytical Chemistry (Q1); Chemistry (miscellaneous) (Q1); Pharmaceutical Science (Q1); Drug Discovery (Q2); Medicine (miscellaneous) (Q2); Organic Chemistry (Q2); Physical and Theoretical Chemistry (Q2); Molecular Medicine (Q3)
Scipion web tools: Easy to use cryo-EM image processing over the web
- Conesa Mingo, Pablo
- Gutierrez, Jose
- Quintana, Adrian
- de la Rosa Trevin, Jose Miguel
- Zaldivar-Peraza, Airen
- Cuenca Alba, Jesus
- Kazemi, Mohsen
- Vargas, Javier
- del Cano, Laura
- Segura, Joan
- Sorzano, Carlos Oscar S.
- Maria Carazo, Jose
PROTEIN SCIENCE - 1/01/2018
- SJR Quartile: Q1
- JCR Impact Factor: 2.42 (2018)
- CiteScore: 7.5 (2020)
- SJR: 1.566 (2018
- SNIP: 0.69 (2018
- JCR 5-year Impact Factor: 2.767
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Biochemistry (Q1); Medicine (miscellaneous) (Q1); Molecular Biology (Q2)
- ORCID
- Scopus
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- ORCID
- Scopus
- Web of Science
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.
- Carazo J.
ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988
- CiteScore: 4.6 (2020)
Parallel architecture for real-time speech recognition in Spanish
- Alexandres S.
- Moran J.
- Carazo J.
- Santos A.
ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/12/1990
- CiteScore: 4.6 (2020)
Image reconstruction on hypercube computers
- Zapata E.L.
- Benavides I.
- Rivera F.F.
- Bruguera J.D.
- Carazo J.M.
1/12/1990
Mapping strategies for sequential sequence comparison algorithms on LAN-based message passing architectures
- Trelles-Salazar O.
- Zapata E.L.
- Carazo J.M.
Lecture Notes In Computer Science - 1/1/1994
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
3D reconstruction of macromolecules on multiprocessors
- Ujaldón M.
- Asenjo R.
- Zapata E.L.
- Cabaleiro J.C.
- Carazo J.M.
Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994
- Scopus
- ORCID
3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING
- Carmen San Martín
- STAMFORD, NPJ
- DAMMEROVA, N
- DIXON, NE
- Jose Maria Carazo Garcia
Electron Microscopy 1994, Vols 3a and 3b - 1994
- ORCID
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1.2 (2020)
- Scopus
- ORCID
Biological sequence analysis on distributed-shared memory multiprocessors
- Rodriguez A.
- de la Fraga L.G.
- Zapata E.L.
- Carazo J.M.
- Trelles O.
Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998
- Scopus
- ORCID
This author has no patents.
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
- Trelles, O
- Ceron, C
- Wang, HC
- Dopazo, J
- Carazo, JM
Bioinformatics - 1/07/1998
10.1093/bioinformatics/14.6.544
- CiteScore: 9.9 (2020)
- Scopus
- ORCID
- Web of Science
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- SJR Quartile: Q1
- CiteScore: 9 (2020)
- SJR: 4.47 (2004
- SNIP: 1.507 (2004
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Web of Science
- Scopus
- ORCID
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Web of Science
- ORCID
- Scopus
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- ORCID
- Scopus
- Web of Science
Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009
- SJR Quartile: Q1
- JCR Impact Factor: 9.432 (2009)
- CiteScore: 16.2 (2020)
- SJR: 7.025 (2009
- SNIP: 2.563 (2009
- JCR 5-year Impact Factor: 10.312
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
iNEXT: a European facility network to stimulate translational structural biology
- Rolf Boelens
- Dmitri Svergun
- Jan Ellenberg
- Cusack, Stephen
- Martin A. Walsh
- Banci, Lucia
- Harald Schwalbe
- Perrakis, Anastassis
- van Leeuwenhoek, Antoni
- Vladimir Sklenar
- Jose Maria Carazo Garcia
- Hartmut Oschkinat
- Thompson, Andrew
- Thunnissen, Marjolein
- Koster, Bram
- Gordon Leonard
- Brutscher, Bernhard
- Stuart, David I.
- Poul Nissen
- Wacklin, Hanna
- Perczel, Andras
- Margarida Archer
- Wierenga, Rik
- Spyroulias, Georgios A.
- Sussman, Joel
- iNEXT Consortium
Febs Letters - 1/06/2018
- ORCID
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador