Carazo García, José María Author
FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy
- David Střelák
- Jiří Filipovič
- Amaya Jiménez-Moreno
- Jose María Carazo
- Carlos Óscar S. Sorzano
Electronics - 23/06/2020
- JCR Impact Factor: 2.397 (2020)
- JCR 5-year Impact Factor: 2.408
- JCR Categories: COMPUTER SCIENCE, INFORMATION SYSTEMS
- Scopus
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- Web of Science
Umbrella Data Management Plans to Integrate FAIR Data : Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
- David R.
- Richard A.S.
- Connellan C.
- Lauer K.B.
- Chiusano M.L.
- Goble C.
- Houde M.
- Kemmer I.
- Keppler A.
- Lieutaud P.
- Ohmann C.
- Panagiotopoulou M.
- Khan S.R.
- Rybina A.
- Soiland-Reyes S.
- Wit C.
- Wittner R.
- Buono R.A.
- Marsh S.A.
- Audergon P.
- Bonfils D.
- Carazo J.M.
- Charrel R.
- Coppens F.
- Fecke W.
- Filippone C.
- Alvarez E.G.
- Gul S.
- Hermjakob H.
- Herzog K.
- Holub P.
- Kozera L.
- Lister A.L.
- López-Coronado J.
- Madon B.
- Majcen K.
- Martin W.
- Müller W.
- Papadopoulou E.
- Prat C.M.A.
- Romano P.
- Sansone S.A.
- Saunders G.
- Blomberg N.
- Ewbank J.
Data Science Journal - 1/1/2023
- Scopus
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Advances in image processing for single-particle analysis by electron cryomicroscopy and challenges ahead
- Vilas J.
- Tabassum N.
- Mota J.
- Maluenda D.
- Jiménez-Moreno A.
- Majtner T.
- Carazo J.
- Acton S.
- Sorzano C.
CURRENT OPINION IN STRUCTURAL BIOLOGY - 1/10/2018
- JCR Quartile: Q2 (2018)
- SJR Quartile: Q1
- JCR Impact Factor: 7.052 (2022)
- Category normalized Impact: 0.46 (2018)
- CiteScore: 12.4 (2020)
- SJR: 4.907 (2018
- SNIP: 1.647 (2018
- JCR 5-year Impact Factor: 6.931
- JCR Categories: CELL BIOLOGY
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Local resolution estimates of cryoEM reconstructions
- Vilas J.L.
- Heymann J.B.
- Tagare H.D.
- Ramirez-Aportela E.
- Carazo J.M.
- Sorzano C.O.S.
Current Opinion in Structural Biology - 1/10/2020
- SJR Quartile: Q1
- JCR Impact Factor: 6.809 (2020)
- CiteScore: 12.4 (2020)
- SJR: 3.935 (2020
- SNIP: 1.459 (2020
- JCR 5-year Impact Factor: 7.045
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Structural Biology (Q1); Molecular Biology (Q1)
- ORCID
- Scopus
- Web of Science
Study of two related configurations of the neck of bacteriophage Ø29
- Carrascosa J.L.
- Carazo J.M.a.
- Herranz L.
- Donate L.E.
- Secilla J.P.
Computers & Mathematics With Applications - 1/1/1990
- CiteScore: 5.8 (2020)
- Scopus
- ORCID
AN IMAGE-PROCESSING APPROACH TO DOTPLOTS - AN X-WINDOW-BASED PROGRAM FOR INTERACTIVE ANALYSIS OF DOTPLOTS DERIVED FROM SEQUENCE AND STRUCTURAL DATA
- TRELLESSALAZAR, O
- ZAPATA, EL
- DOPAZO, J
- COULSON, AFW
- CARAZO, JM
COMPUTER APPLICATIONS IN THE BIOSCIENCES - 1/06/1995
10.1093/bioinformatics/11.3.301
- CiteScore: 9.9 (2020)
- Scopus
- ORCID
- Web of Science
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Sanchez-Garcia R.
- Gomez-Blanco J.
- Cuervo A.
- Carazo J.M.
- Sorzano C.O.S.
- Vargas J.
Communications Biology - 1/12/2021
- JCR Impact Factor: 6.548 (2021)
- JCR 5-year Impact Factor: 6.816
- JCR Categories: BIOLOGY
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Structural basis for cooperativity of human monoclonal antibodies to meningococcal factor H-binding protein
- Peschiera I.
- Giuliani M.
- Giusti F.
- Melero R.
- Paccagnini E.
- Donnarumma D.
- Pansegrau W.
- Carazo J.
- Sorzano C.
- Scarselli M.
- Masignani V.
- Liljeroos L.
- Ferlenghi I.
Communications Biology - 1/12/2019
- JCR Quartile: Q2 (2019)
- SJR Quartile: Q1
- JCR Impact Factor: 4.165 (2022)
- Category normalized Impact: 0.614 (2019)
- CiteScore: 5.2 (2020)
- SJR: 0.973 (2012
- SNIP: 0.877 (2012
- JCR Categories: BIOLOGY
- SJR Categories: Agricultural and Biological Sciences (miscellaneous) (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1)
Emerging Themes in CryoEM─Single Particle Analysis Image Processing
- Vilas J.L.
- Carazo J.M.
- Sorzano C.O.S.
CHEMICAL REVIEWS - 14/9/2022
- JCR Quartile: Q2 (2022)
- JCR Impact Factor: 62.1 (2022)
- Category normalized Impact: 0.526 (2022)
- CiteScore: 98.8 (2021)
- SJR: 18.718 (2021
- SNIP: 12.313 (2021
- JCR 5-year Impact Factor: 66.5
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- ORCID
- Web of Science
- Scopus
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Image reconstruction on hypercube computers
- Zapata E.L.
- Benavides I.
- Rivera F.F.
- Bruguera J.D.
- Carazo J.M.
1/12/1990
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009
10.1109/wisp.2009.5286563 View source
- SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing
- Web of Science
- ORCID
- Scopus
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1.2 (2020)
- Scopus
- ORCID
Functional classification of genes using non-negative independent component analysis
- Monica Chagoyen
- Fernandes, Hugo
- Jose Maria Carazo Garcia
- Pascual-Montano, Alberto
Progress In Industrial Mathematics At Ecmi - 2008
- ORCID
Minisymposium \"New Trends in the Analysis of Functional Genomics Data\"
- Jose Maria Carazo Garcia
- Pascual, Alberto
Progress In Industrial Mathematics At Ecmi - 2008
- ORCID
Biological sequence analysis on distributed-shared memory multiprocessors
- Rodriguez A.
- de la Fraga L.G.
- Zapata E.L.
- Carazo J.M.
- Trelles O.
Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998
- Scopus
- ORCID
3D reconstruction of macromolecules on multiprocessors
- Ujaldón M.
- Asenjo R.
- Zapata E.L.
- Cabaleiro J.C.
- Carazo J.M.
Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994
- Scopus
- ORCID
A semantic mediation approach for problems in computational molecular biology
- Chagoyen M.
- Kurul M.
- De-Alarcon P.
- Santini S.
- Ludäscher B.
- Carazo J.
- Gupta A.
Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003
- SJR Categories: Transportation
- ORCID
- Scopus
This author has no patents.
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M
- Sorzano COS
- Des Georges A
- Carazo JM
- Vargas J
08/2018
- ORCID
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
Automatic local resolution-based sharpening of cryo-EM maps.
- Ramirez-Aportela E
- Vilas JL
- Melero R
- Conesa P
- Martinez M
- Maluenda D
- Mota J
- Jimenez A
- Vargas J
- Marabini R
- Carazo JM
- Sorzano COS
10/2018
- ORCID
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- SJR Quartile: Q1
- CiteScore: 9 (2020)
- SJR: 4.47 (2004
- SNIP: 1.507 (2004
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Web of Science
- Scopus
- ORCID
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- JCR Impact Factor: 4.799 (2021)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.907
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- ORCID
- Scopus
- Web of Science
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador