Carazo García, José María Author
Averaging of Electron Subtomograms and Random Conical Tilt Reconstructions through Likelihood Optimization
- Scheres, Sjors H. W.
- Melero, Roberto
- Valle, Mikel
- Carazo, Jose-Maria
STRUCTURE - 9/12/2009
- SJR Quartile: Q1
- JCR Impact Factor: 5.904 (2009)
- CiteScore: 9 (2020)
- SJR: 4.847 (2009
- SNIP: 1.496 (2009
- JCR 5-year Impact Factor: 5.515
- JCR Categories: CELL BIOLOGY
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Automatic particle selection from electron micrographs using machine learning techniques
- Sorzano, C.O.S.
- Recarte, E.
- Alcorlo, M.
- Bilbao-Castro, J.R.
- San-Martín, C.
- Marabini, R.
- Carazo, J.M.
Journal of Structural Biology - 1/09/2009
10.1016/j.jsb.2009.06.011 View source
- JCR Quartile: Q2 (2009)
- SJR Quartile: Q1
- JCR Impact Factor: 3.673 (2009)
- Category normalized Impact: 0.804 (2009)
- CiteScore: 5.5 (2020)
- SJR: 3.006 (2009
- SNIP: 1.22 (2009
- JCR 5-year Impact Factor: 3.925
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Automatic local resolution-based sharpening of cryo-EM maps
- Ramírez-Aportela E.
- Vilas J.
- Glukhova A.
- Melero R.
- Conesa P.
- Martínez M.
- Maluenda D.
- Mota J.
- Jiménez A.
- Vargas J.
- Marabini R.
- Sexton P.
- Carazo J.
- Sorzano C.
BIOINFORMATICS - 1/2/2020
- JCR Impact Factor: 6.937 (2020)
- CiteScore: 9.9 (2020)
- SJR: 3.599 (2020
- SNIP: 2.056 (2020
- JCR 5-year Impact Factor: 8.47
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- ORCID
- Scopus
- Web of Science
Automatic classification of biological particles from electron-microscopy images using conventional and genetic-algorithm optimized learning vector quantization
- Merelo, J.J.
- Prieto, A.
- Morán, F.
- Marabini, R.
- Carazo, J.M.
Neural Processing Letters - 1/08/1998
10.1023/a:1009617113191 View source
- CiteScore: 4.2 (2020)
- ORCID
- Scopus
- Web of Science
Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules.
- Lapenta F.
- Aupič J.
- Vezzoli M.
- Strmšek Ž.
- Da Vela S.
- Svergun D.I.
- Carazo J.M.
- Melero R.
- Jerala R.
Nature communications - 1/03/2021
- JCR Impact Factor: 17.694 (2021)
- JCR 5-year Impact Factor: 17.764
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- ORCID
- Scopus
A theoretical model for EM-ML reconstruction algorithms applied to rotating PET scanners
- Iriarte, A.
- Sorzano, C. O. S.
- Carazo, J. M.
- Rubio, J. L.
- Marabini, R.
Physics in Medicine and Biology - 7/04/2009
10.1088/0031-9155/54/7/004 View source
- SJR Quartile: Q1
- JCR Impact Factor: 2.781 (2009)
- CiteScore: 5.9 (2020)
- SJR: 1.543 (2009
- SNIP: 1.941 (2009
- JCR 5-year Impact Factor: 2.99
- JCR Categories: RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
- SJR Categories: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)
- Scopus
- ORCID
- Web of Science
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
- Koning, Roman I.
- Gomez-Blanco, Josue
- Akopjana, Inara
- Vargas, Javier
- Kazaks, Andris
- Tars, Kaspars
- Maria Carazo, Jose
- Koster, Abraham J.
Nature Communications - 26/08/2016
- SJR Quartile: Q1
- JCR Impact Factor: 12.124 (2016)
- CiteScore: 20 (2020)
- SJR: 6.414 (2016
- SNIP: 2.916 (2016
- JCR 5-year Impact Factor: 13.092
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Chemistry (miscellaneous) (Q1); Physics and Astronomy (miscellaneous) (Q1)
- ORCID
- Scopus
- Web of Science
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
- Sorzano C.
- Vargas J.
- Otón J.
- De La Rosa-Trevín J.
- Vilas J.
- Kazemi M.
- Melero R.
- Del Caño L.
- Cuenca J.
- Conesa P.
- Gómez-Blanco J.
- Marabini R.
- Carazo J.
Biomed Research International - 1/1/2017
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 2.583 (2022)
- Category normalized Impact: 0.428 (2017)
- CiteScore: 4.1 (2020)
- SJR: 0.935 (2017
- SNIP: 1.034 (2017
- JCR 5-year Impact Factor: 2.931
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1); Immunology and Microbiology (miscellaneous) (Q2)
- Scopus
- ORCID
- Web of Science
A STRUCTURAL MODEL FOR THE ESCHERICHIA-COLI DNAB HELICASE BASED ON ELECTRON-MICROSCOPY DATA
- SANMARTIN, MC
- STAMFORD, NPJ
- DAMMEROVA, N
- DIXON, NE
- CARAZO, JM
JOURNAL OF STRUCTURAL BIOLOGY - 1/05/1995
- CiteScore: 5.5 (2020)
- Scopus
- ORCID
- Web of Science
A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy
- Sorzano, C.O.S.
- Vargas, J.
- de la Rosa-Trevín, J.M.
- Otón, J.
- Álvarez-Cabrera, A.L.
- Abrishami, V.
- Sesmero, E.
- Marabini, R.
- Carazo, J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/03/2015
10.1016/j.jsb.2015.01.009 View source
- JCR Quartile: Q2 (2015)
- SJR Quartile: Q1
- JCR Impact Factor: 2.57 (2022)
- Category normalized Impact: 0.818 (2015)
- CiteScore: 5.5 (2020)
- SJR: 3.448 (2015
- SNIP: 1.109 (2015
- JCR 5-year Impact Factor: 3.067
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- ORCID
- Scopus
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- ORCID
- Scopus
- Web of Science
Using Scipion for Stream Image Processing at CryoEM Facilities
- de la Rosa-Trevin, J. M.
- Gomez-Blanco, J.
- Conesa, P.
- Rancel, Y.
- del Cano, L.
- Arranz, R.
- Chichon, F. J.
- Martin-Benito, J.
- Carroni, M.
- Fleichman, S.
- Lindahl, E.
- Basham, M.
- Clare, D. K.
- Savage, K.
- Siebert, C. A.
- Ashton, A. W.
- Marabini, R.
- Sorzano, C. O. S.
- Carazo, J. M.
Acta Crystallographica Section A - Foundation and Advances - 07/2018
- JCR Impact Factor: 1.878 (2018)
- JCR 5-year Impact Factor: 4.647
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- ORCID
- Web of Science
Two-way clustering of gene expression profiles by sparse matrix factorization
- Pascual-Montano A.
- Carmona-Sáez P.
- Pascual-Marqui R.
- Tirado F.
- Carazo J.
2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005
- SJR Categories: Engineering (miscellaneous)
- ORCID
- Scopus
Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
Three-dimensional domain mapping in the bacteriophage phi 29 connector
- Jose Valpuesta
- Mikel Valle
- Jose-Jesus Fernandez
- Jose Maria Carazo Garcia
- Albar, JP
- Leonor Kremer
- José L. Carrascosa
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Structure of DnaB and DnaB.DnaC complex.
- Carmen San Martín
- Radermacher, M
- Fedtke, B
- Engel, A
- Miles, CS
- Dixon, NE
- Jose Maria Carazo Garcia
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
Stream processing of CryoElectron Microscopy images at the acquisition site
- D. Marchán
- A. García-Mena
- P. Conesa
- Francisco Javier Chichón García
- R. Arranz
- Y. Fonseca-Reyna
- L. del Caño
- I. Sánchez-López
- M. Iceta
- Jose Maria Carazo Garcia
- Carlos Oscar S. Sorzano
Instruct Biennial Structural Biology Conference - 2022
- ORCID
Self-organizing networks for mapping and clustering biological macromolecules images
- Pascual, A
- Montserrat Barcena
- Merelo, JJ
- Jose Maria Carazo Garcia
Artificial Neural Networks In Medicine and Biology - 2000
- ORCID
Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography
- Federico P. de Isidro-Gómez
- de la Morena, Jorge Jimenez
- Pablo Conesa Mingo
- David Herreros
- Fernandez-Gimenez, Estrella
- Fonseca, Yunior C.
- Strelak, David
- J.J. Conesa
- Ana Cuervo
- Patricia Losana
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
This author has no patents.
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- JCR Impact Factor: 7.464 (2021)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 7.913
- JCR Categories: VIROLOGY
- ORCID
- Web of Science
- Scopus
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7.8 (2022)
- SJR: 1.154 (2022
- SNIP: 1.263 (2022
- ORCID
- Web of Science
- Scopus
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- ORCID
- Scopus
- Web of Science
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
- Trelles, O
- Ceron, C
- Wang, HC
- Dopazo, J
- Carazo, JM
Bioinformatics - 1/07/1998
10.1093/bioinformatics/14.6.544
- CiteScore: 9.9 (2020)
- Scopus
- ORCID
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
iNEXT: a European facility network to stimulate translational structural biology
- Rolf Boelens
- Dmitri Svergun
- Jan Ellenberg
- Cusack, Stephen
- Martin A. Walsh
- Banci, Lucia
- Harald Schwalbe
- Perrakis, Anastassis
- van Leeuwenhoek, Antoni
- Vladimir Sklenar
- Jose Maria Carazo Garcia
- Hartmut Oschkinat
- Thompson, Andrew
- Thunnissen, Marjolein
- Koster, Bram
- Gordon Leonard
- Brutscher, Bernhard
- Stuart, David I.
- Poul Nissen
- Wacklin, Hanna
- Perczel, Andras
- Margarida Archer
- Wierenga, Rik
- Spyroulias, Georgios A.
- Sussman, Joel
- iNEXT Consortium
Febs Letters - 1/06/2018
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- ORCID
- Scopus
- Web of Science
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- JCR Impact Factor: 6.7 (2022)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 6.7
- JCR Categories: VIROLOGY
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador