Carazo García, José María Author
Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data
- Carazo, J. M.
- Sorzano, C. O. S.
- Oton, J.
- Marabini, R.
- Vargas, J.
Archives of Biochemistry and Biophysics - 1/09/2015
10.1016/j.abb.2015.05.003 View source
- JCR Quartile: Q1 (2015)
- SJR Quartile: Q1
- JCR Impact Factor: 2.807 (2022)
- Category normalized Impact: 0.299 (2015)
- CiteScore: 5.8 (2020)
- SJR: 1.513 (2015
- SNIP: 1.008 (2015
- JCR 5-year Impact Factor: 3.073
- JCR Categories: BIOPHYSICS
- SJR Categories: Biochemistry (Q1); Biophysics (Q1); Molecular Biology (Q2)
- ORCID
- Scopus
- Web of Science
Three-dimensional reconstruction of bacteriophage φ29 neck particles at 2.2 nm resolution
- CARAZO, JM
- SANTISTEBAN, A
- CARRASCOSA, JL
Journal of Molecular Biology - 5/05/1985
- CiteScore: 8.5 (2020)
- Scopus
- ORCID
- Web of Science
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing
- Fernández J.
- Carazo J.
- García I.
Journal of Parallel and Distributed Computing - 1/02/2004
- SJR Quartile: Q2
- CiteScore: 6.9 (2020)
- SJR: 0.499 (2004
- SNIP: 1.682 (2004
- SJR Categories: Artificial Intelligence (Q2); Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
Three-dimensional reconstruction of the connector of bacteriophage φ29 at 1.8 nm resolution
- CARAZO, JM
- DONATE, LE
- HERRANZ, L
- SECILLA, JP
- CARRASCOSA, JL
Journal of Molecular Biology - 20/12/1986
- CiteScore: 8.5 (2020)
- Scopus
- ORCID
- Web of Science
Three-dimensional reconstruction of the ribosome from Escherichia coli.
- WAGENKNECHT, T
- CARAZO, JM
- RADERMACHER, M
- FRANK, J
Biophysical Journal - 1/03/1989
- CiteScore: 6.3 (2020)
- Web of Science
- Scopus
- ORCID
Three-dimensional reconstruction of the sevenfolded form of Bacillus subtilis Gro EL chaperonin
- CARRASCOSA, JL
- ABELLA, G
- MARCO, S
- CARAZO, JM
Journal of Structural Biology - 1/07/1990
- CiteScore: 5.5 (2020)
- Scopus
- ORCID
- Web of Science
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC
- San Martin, C
- Radermacher, M
- Wolpensinger, B
- Engel, A
- Miles, CS
- Dixon, NE
- Carazo, JM
STRUCTURE - 15/04/1998
- JCR Impact Factor: 7.85 (2022)
- Category normalized Impact: 1.097 (1998)
- CiteScore: 9 (2020)
- Scopus
- ORCID
- Web of Science
Three-dimensional structure of 50 S Escherichia coli ribosomal subunits depleted of proteins L7/L12.
- CARAZO, JM
- WAGENKNECHT, T
- RADERMACHER, M
- MANDIYAN, V
- BOUBLIK, M
- FRANK, J
Journal of molecular biology - 20/05/1988
- CiteScore: 8.5 (2020)
- Scopus
- ORCID
- Web of Science
Three-dimensional structure of T3 connector purified from overexpressing bacteria
- VALPUESTA, JM
- FUJISAWA, H
- MARCO, S
- CARAZO, JM
- CARRASCOSA, JL
Journal of Molecular Biology - 5/03/1992
- ORCID
- Web of Science
tmRNA·SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes
- Cheng, Kimberley
- Ivanova, Natalia
- Scheres, Sjors H. W.
- Pavlov, Michael Y.
- Maria Carazo, Jose
- Hebert, Hans
- Ehrenberg, Mans
- Lindahl, Martin
Journal of Structural Biology - 1/03/2010
- SJR Quartile: Q1
- JCR Impact Factor: 3.5 (2010)
- CiteScore: 5.5 (2020)
- SJR: 2.631 (2010
- SNIP: 1.091 (2010
- JCR 5-year Impact Factor: 4.152
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- ORCID
- Scopus
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.
- Carazo J.
ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988
- CiteScore: 4.6 (2020)
3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING
- Carmen San Martín
- STAMFORD, NPJ
- DAMMEROVA, N
- DIXON, NE
- Jose Maria Carazo Garcia
Electron Microscopy 1994, Vols 3a and 3b - 1994
- ORCID
3D reconstruction of macromolecules on multiprocessors
- Ujaldón M.
- Asenjo R.
- Zapata E.L.
- Cabaleiro J.C.
- Carazo J.M.
Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994
- Scopus
- ORCID
A method for refining the geometry of images collected by the random conical tilt scheme based on common lines
- de la Fraga, LG
- Herman, GT
- Jose Maria Carazo Garcia
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
Analysing cryoEM data quality in the post resolution revolution era: Validity criteria
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
A new image translational alignment method with an application in electron crystallography
- Roca, R
- Danielsson, PE
- Jose Maria Carazo Garcia
- Jose-Jesus Fernandez
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 View source
- SJR Categories: Computer Vision and Pattern Recognition
- ORCID
- Scopus
- Web of Science
A semantic mediation approach for problems in computational molecular biology
- Chagoyen M.
- Kurul M.
- De-Alarcon P.
- Santini S.
- Ludäscher B.
- Carazo J.
- Gupta A.
Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003
- SJR Categories: Transportation
- ORCID
- Scopus
AutoRes: Structure resolution determination through autocorrelation analysis
- J. Vargas
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
3dem Gordon Research Conference 2015 - 2015
- ORCID
BioImage, the data base of volume images: Update on the first prototype
- Jose Maria Carazo Garcia
- Monica Chagoyen
- Lucini, JL
- Stelzer, E
- Lindek, S
- Fritsch, R
- Engel, A
- Heyman, JB
- Fita, I
- Susana G Kalko
- Henn, C
- Pittet, JJ
- McNeil, P
- Rodriquez-Tome, P
- Shotton, D
- Boudier, T
- Machtynger, J
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
This author has no patents.
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- SJR Quartile: Q1
- CiteScore: 9 (2020)
- SJR: 4.47 (2004
- SNIP: 1.507 (2004
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Web of Science
- Scopus
- ORCID
Automatic local resolution-based sharpening of cryo-EM maps.
- Ramirez-Aportela E
- Vilas JL
- Melero R
- Conesa P
- Martinez M
- Maluenda D
- Mota J
- Jimenez A
- Vargas J
- Marabini R
- Carazo JM
- Sorzano COS
10/2018
- ORCID
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Web of Science
- ORCID
- Scopus
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M
- Sorzano COS
- Des Georges A
- Carazo JM
- Vargas J
08/2018
- ORCID
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- JCR Impact Factor: 4.799 (2021)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.907
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- ORCID
- Scopus
- Web of Science
Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009
- SJR Quartile: Q1
- JCR Impact Factor: 9.432 (2009)
- CiteScore: 16.2 (2020)
- SJR: 7.025 (2009
- SNIP: 2.563 (2009
- JCR 5-year Impact Factor: 10.312
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador