Carazo García, José María Author
Identification of incorrectly oriented particles in cryo-EM single particle analysis
- Méndez J.
- Garduño E.
- Carazo J.M.
- Carlos C.O.
JOURNAL OF STRUCTURAL BIOLOGY - 1/9/2021
- JCR Impact Factor: 3.234 (2021)
- CiteScore: 5.5 (2020)
- SJR: 2.564 (2020
- SNIP: 1.018 (2020
- JCR 5-year Impact Factor: 4.064
- JCR Categories: CELL BIOLOGY
- Scopus
- ORCID
- Web of Science
DeepAlign, a 3D alignment method based on regionalized deep learning for Cryo-EM
- Jiménez-Moreno A.
- Střelák D.
- Filipovič J.
- Carazo J.M.
- Sorzano C.O.S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/6/2021
- JCR Impact Factor: 3.234 (2021)
- CiteScore: 5.5 (2020)
- SJR: 2.564 (2020
- SNIP: 1.018 (2020
- JCR 5-year Impact Factor: 4.064
- JCR Categories: CELL BIOLOGY
- Scopus
- ORCID
- Web of Science
Cryo-EM and Single-Particle Analysis with Scipion
- Jiménez-Moreno A.
- Del Caño L.
- Martínez M.
- Ramírez-Aportela E.
- Cuervo A.
- Melero R.
- Sánchez-García R.
- Strelak D.
- Fernández-Giménez E.
- de Isidro-Gómez F.P.
- Herreros D.
- Conesa P.
- Fonseca Y.
- Maluenda D.
- Jiménez de la Morena J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
- Sorzano C.O.S.
Jove-Journal of Visualized Experiments - 29/5/2021
- JCR Quartile: Q2 (2021)
- JCR Impact Factor: 1.424 (2022)
- Category normalized Impact: 0.87 (2021)
- JCR 5-year Impact Factor: 1.789
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- Scopus
- ORCID
- Web of Science
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM
- Sorzano C.O.S.
- Semchonok D.
- Lin S.C.
- Lo Y.C.
- Vilas J.L.
- Jiménez-Moreno A.
- Gragera M.
- Vacca S.
- Maluenda D.
- Martínez M.
- Ramírez-Aportela E.
- Melero R.
- Cuervo A.
- Conesa J.J.
- Conesa P.
- Losana P.
- Caño L.d.
- de la Morena J.J.
- Fonseca Y.C.
- Sánchez-García R.
- Strelak D.
- Fernández-Giménez E.
- de Isidro F.
- Herreros D.
- Kastritis P.L.
- Marabini R.
- Bruce B.D.
- Carazo J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/3/2021
- JCR Quartile: Q2 (2021)
- JCR Impact Factor: 3.234 (2022)
- Category normalized Impact: 1.479 (2021)
- CiteScore: 5.5 (2020)
- SJR: 2.564 (2020
- SNIP: 1.018 (2020
- JCR 5-year Impact Factor: 4.064
- JCR Categories: CELL BIOLOGY
- Scopus
- ORCID
- Web of Science
Self-assembly and regulation of protein cages from pre-organised coiled-coil modules
- Lapenta F.
- Aupič J.
- Vezzoli M.
- Strmšek Ž.
- Da Vela S.
- Svergun D.I.
- Carazo J.M.
- Melero R.
- Jerala R.
Nature Communications - 1/12/2021
- JCR Impact Factor: 17.694 (2021)
- JCR 5-year Impact Factor: 17.764
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- Scopus
- ORCID
- Web of Science
Cryo-EM density maps adjustment for subtraction, consensus and sharpening
- Fernández-Giménez E.
- Martínez M.
- Sánchez-García R.
- Marabini R.
- Ramírez-Aportela E.
- Conesa P.
- Carazo J.M.
- Sorzano C.O.S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/12/2021
- JCR Impact Factor: 3.234 (2021)
- CiteScore: 5.5 (2020)
- SJR: 2.564 (2020
- SNIP: 1.018 (2020
- JCR 5-year Impact Factor: 4.064
- JCR Categories: CELL BIOLOGY
- Scopus
- ORCID
- Web of Science
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Sanchez-Garcia R.
- Gomez-Blanco J.
- Cuervo A.
- Carazo J.M.
- Sorzano C.O.S.
- Vargas J.
Communications Biology - 1/12/2021
- JCR Impact Factor: 6.548 (2021)
- JCR 5-year Impact Factor: 6.816
- JCR Categories: BIOLOGY
- Scopus
- ORCID
- Web of Science
FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation
- Ramírez-Aportela E.
- Maluenda D.
- Fonseca Y.C.
- Conesa P.
- Marabini R.
- Heymann J.B.
- Carazo J.M.
- Sorzano C.O.S.
Nature Communications - 1/12/2021
- JCR Impact Factor: 17.694 (2021)
- JCR 5-year Impact Factor: 17.764
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- Scopus
- ORCID
- Web of Science
PDBe-KB: collaboratively defining the biological context of structural data
- Varadi, Mihaly
- Anyango, Stephen
- Armstrong, David
- Berrisford, John
- Choudhary, Preeti
- Deshpande, Mandar
- Nadzirin, Nurul
- Nair, Sreenath S.
- Pravda, Lukas
- Tanweer, Ahsan
- Al-Lazikani, Bissan
- Andreini, Claudia
- Barton, Geoffrey J.
- Bednar, David
- Berka, Karel
- Blundell, Tom
- Brock, Kelly P.
- Maria Carazo, Jose
- Damborsky, Jiri
- David, Alessia
- Dey, Sucharita
- Dunbrack, Roland
- Fernandez Recio, Juan
- Fraternali, Franca
- Gibson, Toby
- Helmer-Citterich, Manuela
- Hoksza, David
- Hopf, Thomas
- Jakubec, David
- Kannan, Natarajan
- Krivak, Radoslav
- Kumar, Manjeet
- Levy, Emmanuel D.
- London, Nir
- Macias, Jose Ramon
- Srivatsan, Madhusudhan M.
- Marks, Debora S.
- Martens, Lennart
- McGowan, Stuart A.
- McGreig, Jake E.
- Modi, Vivek
- Gonzalo Parra, R.
- Pepe, Gerardo
- Piovesan, Damiano
- Prilusky, Jaime
- Putignano, Valeria
- Radusky, Leandro G.
- Ramasamy, Pathmanaban
- Rausch, Atilio O.
- Reuter, Nathalie
- Rodriguez, Luis A.
- Rollins, Nathan J.
- Rosato, Antonio
- Serrano, Luis
- Singh, Gulzar
- Skoda, Petr
- Sorzano, Carlos Oscar S.
- Stourac, Jan
- Sulkowska, Joanna, I
- Svobodova, Radka
- Tichshenko, Natalia
- Tosatto, Silvio C. E.
- Vranken, Wim
- Wass, Mark N.
- Xue, Dandan
- Zaidman, Daniel
- Thornton, Janet
- Sternberg, Michael
- Orengo, Christine
- Velankar, Sameer
- PDBe-KB Consortium
NUCLEIC ACIDS RESEARCH - 10/11/2021
- JCR Impact Factor: 19.16 (2021)
- CiteScore: 28 (2021)
- SJR: 8.241 (2021
- SNIP: 5.19 (2021
- JCR 5-year Impact Factor: 17.21
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials
- Herreros D.
- Lederman R.R.
- Krieger J.
- Jimenez-Moreno A.
- Martinez M.
- Myska D.
- Strelak D.
- Filipovic J.
- Bahar I.
- Carazo J.M.
- Sanchez C.O.S.
IUCrJ - 1/11/2021
- JCR Impact Factor: 5.588 (2021)
- JCR 5-year Impact Factor: 5.439
- JCR Categories: MATERIALS SCIENCE, MULTIDISCIPLINARY
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Evolutionary genomics of SARS-CoV-2: key for viral success
- Álvarez-Herrera, M.
- Jose Maria Carazo Garcia
- Comas I
- Coscollà, M.
- Santiago F. Elena
- Francés-Gómez, C.
- Franco, M.L.
- García Rasines, D.
- Geller, R.
- Carmen Gil
- Fernando Gonzalez-Candelas
- Hillung, J.
- José Luis Llácer
- Marina, A.
- Marqués, M.C.
- Naveiro Flores, R.
- Ríos, D.
- Rodríguez Santana, S.
- Paula Ruiz-Rodriguez
- Carlos Oscar S. Sorzano
- Ulzurum, E.
- Vidal, M.
44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022
- ORCID
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Stream processing of CryoElectron Microscopy images at the acquisition site
- D. Marchán
- A. García-Mena
- P. Conesa
- Francisco Javier Chichón García
- R. Arranz
- Y. Fonseca-Reyna
- L. del Caño
- I. Sánchez-López
- M. Iceta
- Jose Maria Carazo Garcia
- Carlos Oscar S. Sorzano
Instruct Biennial Structural Biology Conference - 2022
- ORCID
FSC-Q: A method for quality analysis of cryoEM-derived models
- Erney Ramírez-Aportela
- David Maluenda Niubó
- Fonseca, Yunior C.
- Pablo Conesa Mingo
- Roberto Marabini
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography
- Federico P. de Isidro-Gómez
- de la Morena, Jorge Jimenez
- Pablo Conesa Mingo
- David Herreros
- Fernandez-Gimenez, Estrella
- Fonseca, Yunior C.
- Strelak, David
- J.J. Conesa
- Ana Cuervo
- Patricia Losana
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
Oligomeric self-assembly of a coiled-coil-based bipyramidal protein cage
- Lapenta, F.
- Aupic, J.
- Vezzoli, M.
- Strmsek, Z.
- Da Vela, S.
- Svergun, D. I.
- Jose Maria Carazo Garcia
- Roberto Melero
- Jerala, R.
Febs Open Bio - 07/2021
- ORCID
Mesa redonda sobre investigadores y Ciencia Abierta
- Alonso, F.
- Emilio Cano
- María P. Martín
- Jose Maria Carazo Garcia
- Jan Thiele
5as Jornadas de Análisis de la Red de Bibliotecas y Archivos del Csic. Bibliotecas y Archivos del Csic Por la Ciencia Abierta: Presente y Futuro - 2019
- ORCID
Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
Analysing cryoEM data quality in the post resolution revolution era: Validity criteria
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
LocalDeblur: An automatic map sharpening by restauration of local resolution
- Ramirez-Aportela, E.
- Vilas, J. L.
- Carazo, J. M.
- Sanchez Sorzano, C. O.
European Biophysics Journal With Biophysics Letters - 07/2019
- JCR Impact Factor: 2.094 (2019)
- JCR 5-year Impact Factor: 1.888
- JCR Categories: BIOPHYSICS
- ORCID
- Web of Science
This author has no patents.
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7.8 (2022)
- SJR: 1.154 (2022
- SNIP: 1.263 (2022
- Scopus
- ORCID
- Web of Science
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- JCR Impact Factor: 6.7 (2022)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 6.7
- JCR Categories: VIROLOGY
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- JCR Impact Factor: 7.464 (2021)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 7.913
- JCR Categories: VIROLOGY
- Scopus
- ORCID
- Web of Science
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- JCR Impact Factor: 4.799 (2021)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.907
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- Scopus
- ORCID
- Web of Science
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Research projects at UAL
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador