Carazo García, José María Author
PRIDEViewer: A novel user-friendly interface to visualize PRIDE XML files
- Alberto Medina-Aunon, J.
- Carazo, Jose M.
- Pablo Albar, Juan
Proteomics - 2/01/2011
- SJR Quartile: Q1
- JCR Impact Factor: 4.505 (2011)
- CiteScore: 6.3 (2020)
- SJR: 1.691 (2011
- SNIP: 1.19 (2011
- JCR 5-year Impact Factor: 4.615
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- SJR Categories: Biochemistry (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
Scipion web tools: Easy to use cryo-EM image processing over the web
- Conesa Mingo, Pablo
- Gutierrez, Jose
- Quintana, Adrian
- de la Rosa Trevin, Jose Miguel
- Zaldivar-Peraza, Airen
- Cuenca Alba, Jesus
- Kazemi, Mohsen
- Vargas, Javier
- del Cano, Laura
- Segura, Joan
- Sorzano, Carlos Oscar S.
- Maria Carazo, Jose
PROTEIN SCIENCE - 1/01/2018
- SJR Quartile: Q1
- JCR Impact Factor: 2.42 (2018)
- CiteScore: 7.5 (2020)
- SJR: 1.566 (2018
- SNIP: 0.69 (2018
- JCR 5-year Impact Factor: 2.767
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Biochemistry (Q1); Medicine (miscellaneous) (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
Self-organizing tree-growing network for the classification of protein sequences
- Wang, HC
- Dopazo, J
- De la Fraga, LG
- Zhu, YP
- Carazo, JM
Protein Science - 1/12/1998
- CiteScore: 7.5 (2020)
- Scopus
- ORCID
- Web of Science
Localized reconstruction in Scipion expedites the analysis of symmetry mismatches in cryo-EM data
- Abrishami V.
- Ilca S.L.
- Gomez-Blanco J.
- Rissanen I.
- de la Rosa-Trevín J.M.
- Reddy V.S.
- Carazo J.M.
- Huiskonen J.T.
Progress in Biophysics and Molecular Biology - 1/1/2020
10.1016/j.pbiomolbio.2020.05.004
- SJR Quartile: Q1
- JCR Impact Factor: 3.667 (2020)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.196
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Biophysics (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps
- Zhang Y.
- Krieger J.
- Mikulska-Ruminska K.
- Kaynak B.
- Sorzano C.O.S.
- Carazo J.M.
- Xing J.
- Bahar I.
Progress in Biophysics and Molecular Biology - 1/1/2020
10.1016/j.pbiomolbio.2020.08.006
- SJR Quartile: Q1
- JCR Impact Factor: 3.667 (2020)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.196
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Biophysics (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
A review of resolution measures and related aspects in 3D Electron Microscopy
- Sorzano CO
- Vargas J
- Otón J
- Abrishami V
- de la Rosa-Trevín JM
- Gómez-Blanco J
- Vilas JL
- Marabini R
- Carazo JM
Progress in Biophysics and Molecular Biology - 1/03/2017
10.1016/j.pbiomolbio.2016.09.005 View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 3.427 (2022)
- Category normalized Impact: 0.501 (2017)
- CiteScore: 5.8 (2020)
- SJR: 1.446 (2017
- SNIP: 1.236 (2017
- JCR 5-year Impact Factor: 3.125
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Biophysics (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
Quaternary structures of tumor suppressor p53 and a specific p53-DNA complex
- Tidow, Henning
- Melero, Roberto
- Mylonas, Efstratios
- Freund, Stefan M. V.
- Grossmann, J. Guenter
- Carazo, Jose Maria
- Svergun, Dmitri I.
- Valle, Mikel
- Fersht, Alan R.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 24/07/2007
- SJR Quartile: Q1
- CiteScore: 16.2 (2020)
- SJR: 6.867 (2007
- SNIP: 2.459 (2007
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA
- Melero, Roberto
- Rajagopalan, Sridharan
- Lazaro, Melisa
- Joerger, Andreas C.
- Brandt, Tobias
- Veprintsev, Dmitry B.
- Lasso, Gorka
- Gil, David
- Scheres, Sjors H. W.
- Maria Carazo, Jose
- Fersht, Alan R.
- Valle, Mikel
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 11/01/2011
- SJR Quartile: Q1
- JCR Impact Factor: 9.681 (2011)
- CiteScore: 16.2 (2020)
- SJR: 6.864 (2011
- SNIP: 2.642 (2011
- JCR 5-year Impact Factor: 10.472
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Insights into the molecular architecture of the 26S proteasome
- Nickell, Stephan
- Beck, Florian
- Scheres, Sjors H. W.
- Korinek, Andreas
- Foerster, Friedrich
- Lasker, Keren
- Mihalache, Oana
- Sun, Na
- Nagya, Istvan
- Sali, Andrej
- Plitzko, Juergen M.
- Carazo, Jose-Maria
- Mann, Matthias
- Baumeister, Wolfgang
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 21/07/2009
- SJR Quartile: Q1
- JCR Impact Factor: 9.432 (2009)
- CiteScore: 16.2 (2020)
- SJR: 7.025 (2009
- SNIP: 2.563 (2009
- JCR 5-year Impact Factor: 10.312
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Sequence-related protein export NTPases encoded by the conjugative transfer region of RP4 and by the cag pathogenicity island of Helicobacter pylori share similar hexameric ring structures
- Krause, S
- Barcena, M
- Pansegrau, W
- Lurz, R
- Carazo, JM
- Lanka, E
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 28/03/2000
- SJR Quartile: Q1
- Category normalized Impact: 1.111 (2000)
- CiteScore: 16.2 (2020)
- SJR: 7.927 (2000
- SNIP: 2.453 (2000
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods In Molecular Biology (clifton, N.j.) - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
Image reconstruction on hypercube computers
- Zapata E.L.
- Benavides I.
- Rivera F.F.
- Bruguera J.D.
- Carazo J.M.
1/12/1990
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
Wisp 2009 - 6th Ieee International Symposium On Intelligent Signal Processing - Proceedings - 10/08/2009
10.1109/wisp.2009.5286563 View source
- SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing
- Scopus
- ORCID
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization In Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Minisymposium \"New Trends in the Analysis of Functional Genomics Data\"
- Jose Maria Carazo Garcia
- Pascual, Alberto
Progress In Industrial Mathematics At Ecmi - 2008
- ORCID
Functional classification of genes using non-negative independent component analysis
- Monica Chagoyen
- Fernandes, Hugo
- Jose Maria Carazo Garcia
- Pascual-Montano, Alberto
Progress In Industrial Mathematics At Ecmi - 2008
- ORCID
Biological sequence analysis on distributed-shared memory multiprocessors
- Rodriguez A.
- de la Fraga L.G.
- Zapata E.L.
- Carazo J.M.
- Trelles O.
Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998
- Scopus
- ORCID
3D reconstruction of macromolecules on multiprocessors
- Ujaldón M.
- Asenjo R.
- Zapata E.L.
- Cabaleiro J.C.
- Carazo J.M.
Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994
- Scopus
- ORCID
A semantic mediation approach for problems in computational molecular biology
- Chagoyen M.
- Kurul M.
- De-Alarcon P.
- Santini S.
- Ludäscher B.
- Carazo J.
- Gupta A.
Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003
- SJR Categories: Transportation
- Scopus
- ORCID
This author has no patents.
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
Automatic local resolution-based sharpening of cryo-EM maps.
- Ramirez-Aportela E
- Vilas JL
- Melero R
- Conesa P
- Martinez M
- Maluenda D
- Mota J
- Jimenez A
- Vargas J
- Marabini R
- Carazo JM
- Sorzano COS
10/2018
- ORCID
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M
- Sorzano COS
- Des Georges A
- Carazo JM
- Vargas J
08/2018
- ORCID
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- SJR Quartile: Q1
- CiteScore: 9 (2020)
- SJR: 4.47 (2004
- SNIP: 1.507 (2004
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- JCR Impact Factor: 4.799 (2021)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.907
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador