Carazo García, José María Author
3DBIONOTES v2.0: A web server for the automatic annotation of macromolecular structures
- Segura, Joan
- Sanchez-Garcia, Ruben
- Martinez, Marta
- Cuenca-Alba, Jesus
- Tabas-Madrid, Daniel
- Sorzano, C. O. S.
- Carazo, J. M.
Bioinformatics - 15/11/2017
10.1093/bioinformatics/btx483 View source
- SJR Quartile: Q1
- JCR Impact Factor: 5.481 (2017)
- CiteScore: 9.9 (2020)
- SJR: 6.14 (2017
- SNIP: 2.546 (2017
- JCR 5-year Impact Factor: 8.561
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- Scopus
- ORCID
- Web of Science
Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo
- Ljubetic, Ajasja
- Lapenta, Fabio
- Gradisar, Helena
- Drobnak, Igor
- Aupic, Jana
- Strmsek, Ziga
- Lainscek, Dusko
- Hafner-Bratkovic, Iva
- Majerle, Andreja
- Krivec, Nusa
- Bencina, Mojca
- Pisanski, Tomaz
- Velickovic, Tanja Cirkovic
- Round, Adam
- Maria Carazo, Jose
- Melero, Roberto
- Jerala, Roman
NATURE BIOTECHNOLOGY - 1/11/2017
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 35.724 (2022)
- Category normalized Impact: 5.208 (2017)
- CiteScore: 37.4 (2020)
- SJR: 18.252 (2017
- SNIP: 6.291 (2017
- JCR 5-year Impact Factor: 43.271
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Applied Microbiology and Biotechnology (Q1); Bioengineering (Q1); Biomedical Engineering (Q1); Biotechnology (Q1); Molecular Medicine (Q1)
- Scopus
- ORCID
- Web of Science
ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds
- Cuenca-Alba J.
- del Cano L.
- Gómez Blanco J.
- de la Rosa Trevín J.
- Conesa Mingo P.
- Marabini R.
- Carlos C.
- Carazo J.
Journal of Structural Biology - 1/10/2017
- SJR Quartile: Q1
- JCR Impact Factor: 3.433 (2017)
- CiteScore: 5.5 (2020)
- SJR: 3.948 (2017
- SNIP: 0.97 (2017
- JCR 5-year Impact Factor: 3.489
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
- Sorzano C.
- Vargas J.
- Otón J.
- De La Rosa-Trevín J.
- Vilas J.
- Kazemi M.
- Melero R.
- Del Caño L.
- Cuenca J.
- Conesa P.
- Gómez-Blanco J.
- Marabini R.
- Carazo J.
Biomed Research International - 1/1/2017
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 2.583 (2022)
- Category normalized Impact: 0.428 (2017)
- CiteScore: 4.1 (2020)
- SJR: 0.935 (2017
- SNIP: 1.034 (2017
- JCR 5-year Impact Factor: 2.931
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1); Immunology and Microbiology (miscellaneous) (Q2)
- Scopus
- ORCID
- Web of Science
Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap
- Albanese, Pascal
- Melero, Roberto
- Engel, Benjamin D.
- Grinzato, Alessandro
- Berto, Paola
- Manfredi, Marcello
- Chiodoni, Angelica
- Vargas, Javier
- Sanchez Sorzano, Carlos Oscar
- Marengo, Emilio
- Saracco, Guido
- Zanotti, Giuseppe
- Carazo, Jose-Maria
- Pagliano, Cristina
Scientific Reports - 30/08/2017
10.1038/s41598-017-10700-8 View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 4.122 (2022)
- Category normalized Impact: 0.916 (2017)
- CiteScore: 7.1 (2020)
- SJR: 1.533 (2017
- SNIP: 1.263 (2017
- JCR 5-year Impact Factor: 4.609
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Quantitative analysis of 3D alignment quality: Its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas, J.
- Melero, R.
- Gomez-Blanco, J.
- Carazo, J. M.
- Sorzano, C. O. S.
Scientific Reports - 24/07/2017
10.1038/s41598-017-06526-z View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 4.122 (2022)
- Category normalized Impact: 0.597 (2017)
- CiteScore: 7.1 (2020)
- SJR: 1.533 (2017
- SNIP: 1.263 (2017
- JCR 5-year Impact Factor: 4.609
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors
- Martinez, Marta
- Sorzano, Carlos O. S.
- Pascual-Montano, Alberto
- Carazo, Jose M.
PLoS One - 24/05/2017
10.1371/journal.pone.0178316 View source
- SJR Quartile: Q1
- JCR Impact Factor: 2.766 (2017)
- CiteScore: 5.3 (2020)
- SJR: 1.164 (2017
- SNIP: 1.15 (2017
- JCR 5-year Impact Factor: 3.352
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Agricultural and Biological Sciences (miscellaneous) (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1)
- Scopus
- ORCID
- Web of Science
XTEND: Extending the depth of field in cryo soft X-ray tomography
- Otón J.
- Pereiro E.
- Conesa J.
- Chichón F.
- Luque D.
- Rodríguez J.
- Pérez-Berná A.
- Sorzano C.
- Klukowska J.
- Herman G.
- Vargas J.
- Marabini R.
- Carrascosa J.
- Carazo J.
Scientific Reports - 4/04/2017
- JCR Quartile: Q1 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 4.122 (2022)
- Category normalized Impact: 0.886 (2017)
- CiteScore: 7.1 (2020)
- SJR: 1.533 (2017
- SNIP: 1.263 (2017
- JCR 5-year Impact Factor: 4.609
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Electron microscopy structural insights into CPAP oligomeric behavior: A plausible assembly process of a supramolecular scaffold of the centrosome
- Alvarez-Cabrera, Ana L.
- Delgado, Sandra
- Gil-Carton, David
- Mortuza, Gulnahar B.
- Montoya, Guillermo
- Sorzano, Carlos O. S.
- Tang, Tang K.
- Carazo, Jose M.
Frontiers in Molecular Biosciences - 27/03/2017
10.3389/fmolb.2017.00017 View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- Category normalized Impact: 0.159 (2017)
- SJR Categories: Biochemistry (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
A review of resolution measures and related aspects in 3D Electron Microscopy
- Sorzano CO
- Vargas J
- Otón J
- Abrishami V
- de la Rosa-Trevín JM
- Gómez-Blanco J
- Vilas JL
- Marabini R
- Carazo JM
Progress in Biophysics and Molecular Biology - 1/03/2017
10.1016/j.pbiomolbio.2016.09.005 View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 3.427 (2022)
- Category normalized Impact: 0.501 (2017)
- CiteScore: 5.8 (2020)
- SJR: 1.446 (2017
- SNIP: 1.236 (2017
- JCR 5-year Impact Factor: 3.125
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Biophysics (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods In Molecular Biology (clifton, N.j.) - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Evolutionary genomics of SARS-CoV-2: key for viral success
- Álvarez-Herrera, M.
- Jose Maria Carazo Garcia
- Comas I
- Coscollà, M.
- Santiago F. Elena
- Francés-Gómez, C.
- Franco, M.L.
- García Rasines, D.
- Geller, R.
- Carmen Gil
- Fernando Gonzalez-Candelas
- Hillung, J.
- José Luis Llácer
- Marina, A.
- Marqués, M.C.
- Naveiro Flores, R.
- Ríos, D.
- Rodríguez Santana, S.
- Paula Ruiz-Rodriguez
- Carlos Oscar S. Sorzano
- Ulzurum, E.
- Vidal, M.
44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022
- ORCID
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Stream processing of CryoElectron Microscopy images at the acquisition site
- D. Marchán
- A. García-Mena
- P. Conesa
- Francisco Javier Chichón García
- R. Arranz
- Y. Fonseca-Reyna
- L. del Caño
- I. Sánchez-López
- M. Iceta
- Jose Maria Carazo Garcia
- Carlos Oscar S. Sorzano
Instruct Biennial Structural Biology Conference - 2022
- ORCID
FSC-Q: A method for quality analysis of cryoEM-derived models
- Erney Ramírez-Aportela
- David Maluenda Niubó
- Fonseca, Yunior C.
- Pablo Conesa Mingo
- Roberto Marabini
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography
- Federico P. de Isidro-Gómez
- de la Morena, Jorge Jimenez
- Pablo Conesa Mingo
- David Herreros
- Fernandez-Gimenez, Estrella
- Fonseca, Yunior C.
- Strelak, David
- J.J. Conesa
- Ana Cuervo
- Patricia Losana
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
Oligomeric self-assembly of a coiled-coil-based bipyramidal protein cage
- Lapenta, F.
- Aupic, J.
- Vezzoli, M.
- Strmsek, Z.
- Da Vela, S.
- Svergun, D. I.
- Jose Maria Carazo Garcia
- Roberto Melero
- Jerala, R.
Febs Open Bio - 07/2021
- ORCID
Mesa redonda sobre investigadores y Ciencia Abierta
- Alonso, F.
- Emilio Cano
- María P. Martín
- Jose Maria Carazo Garcia
- Jan Thiele
5as Jornadas de Análisis de la Red de Bibliotecas y Archivos del Csic. Bibliotecas y Archivos del Csic Por la Ciencia Abierta: Presente y Futuro - 2019
- ORCID
Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
Analysing cryoEM data quality in the post resolution revolution era: Validity criteria
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
LocalDeblur: An automatic map sharpening by restauration of local resolution
- Ramirez-Aportela, E.
- Vilas, J. L.
- Carazo, J. M.
- Sanchez Sorzano, C. O.
European Biophysics Journal With Biophysics Letters - 07/2019
- JCR Impact Factor: 2.094 (2019)
- JCR 5-year Impact Factor: 1.888
- JCR Categories: BIOPHYSICS
- ORCID
- Web of Science
This author has no patents.
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7.8 (2022)
- SJR: 1.154 (2022
- SNIP: 1.263 (2022
- Scopus
- ORCID
- Web of Science
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- JCR Impact Factor: 6.7 (2022)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 6.7
- JCR Categories: VIROLOGY
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- JCR Impact Factor: 7.464 (2021)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 7.913
- JCR Categories: VIROLOGY
- Scopus
- ORCID
- Web of Science
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- JCR Impact Factor: 4.799 (2021)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.907
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- Scopus
- ORCID
- Web of Science
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador