Carazo García, José María Author
Grid computing in structure determination of biological specimens by electron microscope tomography
- Fernández J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- García I.
Grid Computing - 1/12/2004
- CiteScore: 1.8 (2020)
- SJR: 0.347 (2004
- SNIP: 0.851 (2004
- ORCID
- Scopus
- Web of Science
Image processing and 3-D reconstruction in electron microscopy
- Fernandez, J.-J.
- Sorzano, C.O.S.
- Marabini, R.
- Carazo, J.-M.
IEEE Signal Processing Magazine - 1/05/2006
10.1109/msp.2006.1628881 View source
- JCR Quartile: Q1 (2006)
- SJR Quartile: Q1
- JCR Impact Factor: 2.655 (2022)
- Category normalized Impact: 1.274 (2006)
- CiteScore: 18.8 (2020)
- SJR: 1.507 (2006
- SNIP: 5.057 (2006
- SJR Categories: Applied Mathematics (Q1); Electrical and Electronic Engineering (Q1); Music (Q1); Signal Processing (Q1)
- Web of Science
- Scopus
- ORCID
3-D reconstruction of 2-D crystals in real space
- Marabini, R
- Sorzano, COS
- Matej, S
- Fernandez, JJ
- Carazo, JM
- Herman, GT
IEEE Transactions on Image Processing - 1/04/2004
10.1109/tip.2003.822620 View source
- JCR Quartile: Q1 (2004)
- SJR Quartile: Q1
- JCR Impact Factor: 2.011 (2022)
- Category normalized Impact: 0.483 (2004)
- CiteScore: 16.3 (2020)
- SJR: 1.315 (2004
- SNIP: 4.401 (2004
- SJR Categories: Computer Graphics and Computer-Aided Design (Q1); Software (Q1)
- Scopus
- ORCID
- Web of Science
Nonsmooth nonnegative matrix factorization (nsNMF)
- Pascual-Montano, A
- Carazo, JM
- Kochi, K
- Lehmann, D
- Pascual-Marqui, RD
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE - 1/03/2006
- SJR Quartile: Q1
- CiteScore: 44.2 (2020)
- SJR: 2.815 (2006
- SNIP: 6.871 (2006
- SJR Categories: Applied Mathematics (Q1); Artificial Intelligence (Q1); Computational Theory and Mathematics (Q1); Computer Vision and Pattern Recognition (Q1); Software (Q1)
- ORCID
- Scopus
- Web of Science
Multidimensional fast Fourier transform into SIMD hypercubes
- Zapata E.
- Rivera F.
- Benavides I.
- Carazo J.
- Peskin R.
IEE Proceedings E: Computers and Digital Techniques - 1/1/1990
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM
- St?elák D.
- Sorzano C.
- Carazo J.
- Filipovi? J.
INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS - 1/9/2019
- SJR Quartile: Q2
- JCR Impact Factor: 2.365 (2019)
- CiteScore: 3.8 (2020)
- SJR: 0.385 (2019
- SNIP: 1.059 (2019
- JCR 5-year Impact Factor: 2.521
- JCR Categories: COMPUTER SCIENCE, HARDWARE & ARCHITECTURE
- SJR Categories: Hardware and Architecture (Q2); Software (Q3); Theoretical Computer Science (Q3)
- Scopus
- ORCID
- Web of Science
Image processing approaches to biological three-dimensional electron microscopy
- Herman, G.T.
- Marabini, R.
- Carazo, J.-M.
- Garduño, E.
- Lewitt, R.M.
- Matej, S.
International Journal of Imaging Systems and Technology - 1/1/2000
10.1002/(sici)1098-1098(2000)11:1<12::aid-ima3>3.0.co;2-n
- SJR Quartile: Q2
- CiteScore: 2.8 (2020)
- SJR: 0.29 (2000
- SNIP: 0.587 (2000
- SJR Categories: Electrical and Electronic Engineering (Q2); Computer Vision and Pattern Recognition (Q3); Electronic, Optical and Magnetic Materials (Q3); Software (Q3)
- Scopus
- ORCID
- Web of Science
Design and analysis of an object-oriented discrete-event simulation engine for ATM telecommunication networks
- Cortes P.
- Munuzuri J.
- Onieva L.
- Carazo J.M.
International Journal of Simulation and Process Modelling - 1/1/2008
- SJR Quartile: Q3
- CiteScore: 2.3 (2020)
- SJR: 0.233 (2008
- SNIP: 0.97 (2008
- SJR Categories: Computer Science Applications (Q3); Modeling and Simulation (Q3); Applied Mathematics (Q4)
The soft x-ray transform
- Klukowska, J.
- Herman, G.T.
- Otón, J.
- Marabini, R.
- Carazo, J.-M.
Inverse Problems - 1/12/2014
10.1088/0266-5611/30/12/125015 View source
- JCR Quartile: Q2 (2014)
- SJR Quartile: Q1
- JCR Impact Factor: 1.323 (2022)
- Category normalized Impact: 0.232 (2014)
- CiteScore: 3.7 (2020)
- SJR: 1.252 (2014
- SNIP: 1.397 (2014
- JCR 5-year Impact Factor: 1.95
- JCR Categories: PHYSICS, MATHEMATICAL
- SJR Categories: Applied Mathematics (Q1); Computer Science Applications (Q1); Mathematical Physics (Q1); Signal Processing (Q1); Theoretical Computer Science (Q1)
- ORCID
- Scopus
- Web of Science
Higher resolution in cryo-EM by the combination of macromolecular prior knowledge and image-processing tools
- Ramírez-Aportela E.
- Carazo J.M.
- Sorzano C.O.S.
- Sun F.
Iucrj - 1/09/2022
- JCR Quartile: Q2 (2022)
- JCR Impact Factor: 3.9 (2022)
- JCR 5-year Impact Factor: 4.4
- JCR Categories: MATERIALS SCIENCE, MULTIDISCIPLINARY
- ORCID
- Web of Science
- Scopus
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- ORCID
- Scopus
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- ORCID
- Scopus
- Web of Science
Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM
- Velázquez-Muriel J.
- Carazo J.
2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005
- SJR Categories: Engineering (miscellaneous)
- ORCID
- Scopus
Two-way clustering of gene expression profiles by sparse matrix factorization
- Pascual-Montano A.
- Carmona-Sáez P.
- Pascual-Marqui R.
- Tirado F.
- Carazo J.
2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005
- SJR Categories: Engineering (miscellaneous)
- ORCID
- Scopus
Molecular image registration using mutual information and differential evolution optimization
- Telenczuk, Bartosz
- Ledesma-Carbayo, Marta J.
- Velazquez-Muriel, Javier A.
- Sorzano, Carlos O. S.
- Carazo, Jose-Maria
- Santos, Andres
- IEEE
2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano To Macro - Proceedings - 17/11/2006
- Scopus
- ORCID
- Web of Science
Flexible image registration for the identification of best fitted protein models in 3D-EM maps
- Fernandez-de-Manuell, Laura
- Ledesma-Carbayol, Maria J.
- Atienza-Herrero, Julian
- Sorzano, Carlos O. S.
- Carazo, Jose-Maria
- Santos, Andres
- IEEE
2008 5th Ieee International Symposium On Biomedical Imaging: From Nano To Macro, Proceedings, Isbi - 10/05/2008
10.1109/isbi.2008.4541163 View source
- Scopus
- ORCID
- Web of Science
Extraction of biomedical events using case-based reasoning
- Mariana Neves
- Jose Maria Carazo Garcia
- Pascual-Montano, Alberto
2009 Biomedical Natural Language Processing Workshop, Bionlp 2009 - Companion Volume: Shared Task On Event Extraction - 2009
- ORCID
Modeling shape and topology of 3D images of biological specimens
- De-Alarcón P.
- Pascual-Montano A.
- Gupta A.
- Carazo J.
2014 22nd International Conference On Pattern Recognition (icpr) - 1/12/2002
- CiteScore: 2.9 (2019)
- SJR: 0.32 (2002
- SNIP: 0.954 (2002
- SJR Categories: Computer Vision and Pattern Recognition
- Scopus
- ORCID
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 View source
- SJR Categories: Computer Vision and Pattern Recognition
- ORCID
- Scopus
- Web of Science
AutoRes: Structure resolution determination through autocorrelation analysis
- J. Vargas
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
3dem Gordon Research Conference 2015 - 2015
- ORCID
Evolutionary genomics of SARS-CoV-2: key for viral success
- Álvarez-Herrera, M.
- Jose Maria Carazo Garcia
- Comas I
- Coscollà, M.
- Santiago F. Elena
- Francés-Gómez, C.
- Franco, M.L.
- García Rasines, D.
- Geller, R.
- Carmen Gil
- Fernando Gonzalez-Candelas
- Hillung, J.
- José Luis Llácer
- Marina, A.
- Marqués, M.C.
- Naveiro Flores, R.
- Ríos, D.
- Rodríguez Santana, S.
- Paula Ruiz-Rodriguez
- Carlos Oscar S. Sorzano
- Ulzurum, E.
- Vidal, M.
44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022
- ORCID
Mesa redonda sobre investigadores y Ciencia Abierta
- Alonso, F.
- Emilio Cano
- María P. Martín
- Jose Maria Carazo Garcia
- Jan Thiele
5as Jornadas de Análisis de la Red de Bibliotecas y Archivos del Csic. Bibliotecas y Archivos del Csic Por la Ciencia Abierta: Presente y Futuro - 2019
- ORCID
This author has no patents.
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
- Trelles, O
- Ceron, C
- Wang, HC
- Dopazo, J
- Carazo, JM
Bioinformatics - 1/07/1998
10.1093/bioinformatics/14.6.544
- CiteScore: 9.9 (2020)
- Scopus
- ORCID
- Web of Science
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
iNEXT: a European facility network to stimulate translational structural biology
- Rolf Boelens
- Dmitri Svergun
- Jan Ellenberg
- Cusack, Stephen
- Martin A. Walsh
- Banci, Lucia
- Harald Schwalbe
- Perrakis, Anastassis
- van Leeuwenhoek, Antoni
- Vladimir Sklenar
- Jose Maria Carazo Garcia
- Hartmut Oschkinat
- Thompson, Andrew
- Thunnissen, Marjolein
- Koster, Bram
- Gordon Leonard
- Brutscher, Bernhard
- Stuart, David I.
- Poul Nissen
- Wacklin, Hanna
- Perczel, Andras
- Margarida Archer
- Wierenga, Rik
- Spyroulias, Georgios A.
- Sussman, Joel
- iNEXT Consortium
Febs Letters - 1/06/2018
- ORCID
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7.8 (2022)
- SJR: 1.154 (2022
- SNIP: 1.263 (2022
- ORCID
- Web of Science
- Scopus
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- ORCID
- Scopus
- Web of Science
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- ORCID
- Scopus
- Web of Science
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Web of Science
- ORCID
- Scopus
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- JCR Impact Factor: 6.7 (2022)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 6.7
- JCR Categories: VIROLOGY
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- JCR Impact Factor: 7.464 (2021)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 7.913
- JCR Categories: VIROLOGY
- ORCID
- Web of Science
- Scopus
Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009
- SJR Quartile: Q1
- JCR Impact Factor: 9.432 (2009)
- CiteScore: 16.2 (2020)
- SJR: 7.025 (2009
- SNIP: 2.563 (2009
- JCR 5-year Impact Factor: 10.312
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Research projects at UAL
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador