Carazo García, José María Author
ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis
- Herreros D.
- Kiska J.
- Ramírez-Aportela E.
- Filipovic J.
- Carazo J.M.
- Sorzano C.O.S.
Journal of Molecular Biology - 1/1/2023
- CiteScore: 10.8 (2022)
- SJR: 2.421 (2022
- SNIP: 1.281 (2022
- Scopus
- ORCID
- Web of Science
XTEND: Extending the depth of field in cryo soft X-ray tomography
- Otón J.
- Pereiro E.
- Conesa J.
- Chichón F.
- Luque D.
- Rodríguez J.
- Pérez-Berná A.
- Sorzano C.
- Klukowska J.
- Herman G.
- Vargas J.
- Marabini R.
- Carrascosa J.
- Carazo J.
Scientific Reports - 4/04/2017
- JCR Quartile: Q1 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 4.122 (2022)
- Category normalized Impact: 0.886 (2017)
- CiteScore: 7.1 (2020)
- SJR: 1.533 (2017
- SNIP: 1.263 (2017
- JCR 5-year Impact Factor: 4.609
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
X-ray structure of full-length human RuvB-Like 2-mechanistic insights into coupling between ATP binding and mechanical action
- Silva, Sara T. N.
- Brito, Jose A.
- Arranz, Rocio
- Sorzano, Carlos Oscar S.
- Ebel, Christine
- Doutch, James
- Tully, Mark D.
- Carazo, Jose-Maria
- Carrascosa, Jose L.
- Matias, Pedro M.
- Bandeiras, Tiago M.
Scientific Reports - 13/09/2018
10.1038/s41598-018-31997-z View source
- SJR Quartile: Q1
- JCR Impact Factor: 4.011 (2018)
- CiteScore: 4.29 (2018)
- SJR: 1.414 (2018
- SNIP: 1.24 (2018
- JCR 5-year Impact Factor: 4.525
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- SJR Categories: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Xmipp: An image processing package for electron microscopy
- Marabini, R.
- Masegosa, I.M.
- San Martín, M.C.
- Marco, S.
- Fernández, J.J.
- De La Fraga, L.G.
- Vaquerizo, C.
- Carazo, J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/01/1996
10.1006/jsbi.1996.0036 View source
- JCR Impact Factor: 3.071 (2022)
- Category normalized Impact: 3.149 (1996)
- CiteScore: 5.5 (2020)
- Scopus
- ORCID
- Web of Science
XMIPP: a new generation of an open-source image processing package for electron microscopy
- Sorzano, C.O.S.
- Marabini, R.
- Velázquez-Muriel, J.
- Bilbao-Castro, J.R.
- Scheres, S.H.W.
- Carazo, J.M.
- Pascual-Montano, A.
JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2004
10.1016/j.jsb.2004.06.006 View source
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 3.132 (2022)
- Category normalized Impact: 6.073 (2004)
- CiteScore: 5.5 (2020)
- SJR: 2.385 (2004
- SNIP: 1.286 (2004
- SJR Categories: Structural Biology (Q2)
- Scopus
- ORCID
- Web of Science
Xmipp 3.0: An improved software suite for image processing in electron microscopy
- de la Rosa-Trevin, J. M.
- Oton, J.
- Marabini, R.
- Zaldivar, A.
- Vargas, J.
- Carazo, J. M.
- Sorzano, C. O. S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2013
10.1016/j.jsb.2013.09.015 View source
- JCR Quartile: Q2 (2013)
- SJR Quartile: Q1
- JCR Impact Factor: 3.369 (2013)
- Category normalized Impact: 5.507 (2013)
- CiteScore: 5.5 (2020)
- SJR: 2.596 (2013
- SNIP: 1.256 (2013
- JCR 5-year Impact Factor: 3.407
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
West-Life: A Virtual Research Environment for structural biology
- Morris C.
- Andreetto P.
- Banci L.
- Bonvin A.M.J.J.
- Chojnowski G.
- Cano L.d.
- Carazo J.M.
- Conesa P.
- Daenke S.
- Damaskos G.
- Giachetti A.
- Haley N.E.C.
- Hekkelman M.L.
- Heuser P.
- Joosten R.P.
- Kouřil D.
- Křenek A.
- Kulhánek T.
- Lamzin V.S.
- Nadzirin N.
- Perrakis A.
- Rosato A.
- Sanderson F.
- Segura J.
- Schaarschmidt J.
- Sobolev E.
- Traldi S.
- Trellet M.E.
- Velankar S.
- Verlato M.
- Winn M.
Journal of Structural Biology: X - 1/01/2019
- JCR Impact Factor: 3.071 (null)
- CiteScore: 1.7 (2020)
- JCR 5-year Impact Factor: 3.529
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Structural Biology
- Scopus
- ORCID
- Web of Science
Volumetric restrictions in single particle 3DEM reconstruction
- Sorzano, C.O.S.
- Velázquez-Muriel, J.A.
- Marabini, R.
- Herman, G.T.
- Carazo, J.M.
Pattern Recognition - 1/02/2008
10.1016/j.patcog.2007.06.010 View source
- JCR Quartile: Q2 (2008)
- SJR Quartile: Q1
- JCR Impact Factor: 3.279 (2022)
- Category normalized Impact: 0.326 (2008)
- CiteScore: 15.7 (2020)
- SJR: 1.196 (2008
- SNIP: 2.213 (2008
- SJR Categories: Artificial Intelligence (Q1); Computer Vision and Pattern Recognition (Q1); Signal Processing (Q1); Software (Q1)
- Scopus
- ORCID
- Web of Science
Volumetric constraints in 3D tomography applied to electron microscopy
- Marabini R.
- Herman G.
- Sorzano C.
- Carazo J.
2002 Ieee International Symposium on Biomedical Imaging, Proceedings - 1/1/2002
10.1109/isbi.2002.1029339 View source
- Scopus
- ORCID
- Web of Science
Variations of the three-dimensional structure of the Escherichia coli ribosome in the range of overlap views. An application of the methods of multicone and local single-cone three-dimensional reconstruction.
- CARAZO, JM
- WAGENKNECHT, T
- FRANK, J
Biophysical Journal - 1/03/1989
- CiteScore: 6.3 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
Using Scipion for Stream Image Processing at CryoEM Facilities
- de la Rosa-Trevin, J. M.
- Gomez-Blanco, J.
- Conesa, P.
- Rancel, Y.
- del Cano, L.
- Arranz, R.
- Chichon, F. J.
- Martin-Benito, J.
- Carroni, M.
- Fleichman, S.
- Lindahl, E.
- Basham, M.
- Clare, D. K.
- Savage, K.
- Siebert, C. A.
- Ashton, A. W.
- Marabini, R.
- Sorzano, C. O. S.
- Carazo, J. M.
Acta Crystallographica Section A - Foundation and Advances - 07/2018
- JCR Impact Factor: 1.878 (2018)
- JCR 5-year Impact Factor: 4.647
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- ORCID
- Web of Science
Two-way clustering of gene expression profiles by sparse matrix factorization
- Pascual-Montano A.
- Carmona-Sáez P.
- Pascual-Marqui R.
- Tirado F.
- Carazo J.
2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005
- SJR Categories: Engineering (miscellaneous)
- Scopus
- ORCID
Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
Three-dimensional domain mapping in the bacteriophage phi 29 connector
- Jose Valpuesta
- Mikel Valle
- Jose-Jesus Fernandez
- Jose Maria Carazo Garcia
- Albar, JP
- Leonor Kremer
- José L. Carrascosa
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Structure of DnaB and DnaB.DnaC complex.
- Carmen San Martín
- Radermacher, M
- Fedtke, B
- Engel, A
- Miles, CS
- Dixon, NE
- Jose Maria Carazo Garcia
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
Stream processing of CryoElectron Microscopy images at the acquisition site
- D. Marchán
- A. García-Mena
- P. Conesa
- Francisco Javier Chichón García
- R. Arranz
- Y. Fonseca-Reyna
- L. del Caño
- I. Sánchez-López
- M. Iceta
- Jose Maria Carazo Garcia
- Carlos Oscar S. Sorzano
Instruct Biennial Structural Biology Conference - 2022
- ORCID
Self-organizing networks for mapping and clustering biological macromolecules images
- Pascual, A
- Montserrat Barcena
- Merelo, JJ
- Jose Maria Carazo Garcia
Artificial Neural Networks In Medicine and Biology - 2000
- ORCID
Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography
- Federico P. de Isidro-Gómez
- de la Morena, Jorge Jimenez
- Pablo Conesa Mingo
- David Herreros
- Fernandez-Gimenez, Estrella
- Fonseca, Yunior C.
- Strelak, David
- J.J. Conesa
- Ana Cuervo
- Patricia Losana
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
This author has no patents.
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- JCR Impact Factor: 7.464 (2021)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 7.913
- JCR Categories: VIROLOGY
- Scopus
- ORCID
- Web of Science
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7.8 (2022)
- SJR: 1.154 (2022
- SNIP: 1.263 (2022
- Scopus
- ORCID
- Web of Science
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
- Trelles, O
- Ceron, C
- Wang, HC
- Dopazo, J
- Carazo, JM
Bioinformatics - 1/07/1998
10.1093/bioinformatics/14.6.544
- CiteScore: 9.9 (2020)
- Scopus
- ORCID
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
iNEXT: a European facility network to stimulate translational structural biology
- Rolf Boelens
- Dmitri Svergun
- Jan Ellenberg
- Cusack, Stephen
- Martin A. Walsh
- Banci, Lucia
- Harald Schwalbe
- Perrakis, Anastassis
- van Leeuwenhoek, Antoni
- Vladimir Sklenar
- Jose Maria Carazo Garcia
- Hartmut Oschkinat
- Thompson, Andrew
- Thunnissen, Marjolein
- Koster, Bram
- Gordon Leonard
- Brutscher, Bernhard
- Stuart, David I.
- Poul Nissen
- Wacklin, Hanna
- Perczel, Andras
- Margarida Archer
- Wierenga, Rik
- Spyroulias, Georgios A.
- Sussman, Joel
- iNEXT Consortium
Febs Letters - 06/2018
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- Scopus
- ORCID
- Web of Science
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- JCR Impact Factor: 6.7 (2022)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 6.7
- JCR Categories: VIROLOGY
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Research projects at UAL
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador