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Carazo García, José María Author

Open Access

ICAM-1 nanoclusters regulate hepatic epithelial cell polarity by leukocyte adhesion-independent control of apical actomyosin

  • Cristina Cacho Navas
  • Lopez-Pujante, Carmen
  • Reglero-Real, Natalia
  • Natalia Colás-Algora
  • Ana Cuervo
  • J.J. Conesa
  • Barroso, Susana
  • de Rivas, Gema
  • Sergio Ciordia
  • Alberto Paradela
  • Gianluca D'Agostino
  • Manzo, Carlo
  • Feito, Jorge
  • German Andres
  • Molina-Jimenez, Francisca
  • Majano, Pedro
  • Isabel Correas
  • Jose Maria Carazo Garcia
  • Nourshargh, Sussan
  • Huch, Meritxell
  • Jaime Millán
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ELIFE - 10/4/2024

10.7554/elife.89261

Cite count: 1 (Web of Science)

A deep learning approach to the automatic detection of alignment errors in cryo-electron tomographic reconstructions

  • de Isidro-Gómez F.P.
  • Vilas J.L.
  • Losana P.
  • Carazo J.M.
  • Sorzano C.O.S.

JOURNAL OF STRUCTURAL BIOLOGY - 1/3/2024

10.1016/j.jsb.2023.108056

Cite count:
  • CiteScore: 6.3 (2023)
  • SJR: 1.771 (2023
  • SNIP: 0.801 (2023

Scipion flexibility hub and Scipion chem: New frameworks coupling computational biophysics of protein dynamics and virtual screening to cryo-electron microscopy

  • James Krieger
  • David Herreros
  • del Hoyo, Daniel
  • Fonseca, Yunior
  • Marcos Gragera
  • Carlos P. Mata
  • Lomas, Alba
  • Ulzurrun, Eugenia
  • Pablo Conesa Mingo
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia
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BIOPHYSICAL JOURNAL - 8/2/2024

Cite count:
Open Access

Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5′-Untranslated Region of SARS-CoV-2

  • Mertinkus K.R.
  • Oxenfarth A.
  • Richter C.
  • Wacker A.
  • Mata C.P.
  • Carazo J.M.
  • Schlundt A.
  • Schwalbe H.
... View more Collapse

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY - 23/10/2024

10.1021/jacs.4c08406

Cite count:
  • CiteScore: 24.4 (2023)
  • SJR: 5.489 (2023
  • SNIP: 2.48 (2023
Open Access

The future of integrated structural biology

  • Schwalbe H.
  • Audergon P.
  • Haley N.
  • Amaro C.A.
  • Agirre J.
  • Baldus M.
  • Banci L.
  • Baumeister W.
  • Blackledge M.
  • Carazo J.M.
  • Carugo K.D.
  • Celie P.
  • Felli I.
  • Hart D.J.
  • Hauß T.
  • Lehtiö L.
  • Lindorff-Larsen K.
  • Márquez J.
  • Matagne A.
  • Pierattelli R.
  • Rosato A.
  • Sobott F.
  • Sreeramulu S.
  • Steyaert J.
  • Sussman J.L.
  • Trantirek L.
  • Weiss M.S.
  • Wilmanns M.
... View more Collapse

Structure - 3/10/2024

10.1016/j.str.2024.08.014

Cite count:
  • CiteScore: 8.9 (2023)
  • SJR: 2.456 (2023
  • SNIP: 1.064 (2023
Open Access

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

  • James Michael Krieger
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES - 10/9/2023

10.3390/ijms241814245

Cite count: 2 (Web of Science) 2 (Scopus)
  • JCR Impact Factor: 4.9 (2023)
  • CiteScore: 7.8 (2022)
  • SJR: 1.154 (2022
  • SNIP: 1.263 (2022
  • JCR 5-year Impact Factor: 5.6
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY

<i>Scipion</i> Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM

  • Herreros D.
  • Krieger J.M.
  • Fonseca Y.
  • Conesa P.
  • Harastani M.
  • Vuillemot R.
  • Hamitouche I.
  • Serrano Gutiérrez R.
  • Gragera M.
  • Melero R.
  • Jonic S.
  • Carazo J.M.
  • Sorzano C.O.S.
... View more Collapse

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY - 1/7/2023

10.1107/s2059798323004497

Cite count: 3 (Web of Science) 2 (Scopus)
  • JCR Impact Factor: 2.6 (2023)
  • CiteScore: 7.5 (2022)
  • SJR: 3.87 (2022
  • SNIP: 1.47 (2022
  • JCR 5-year Impact Factor: 5.2
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS

ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis

  • Herreros D.
  • Kiska J.
  • Ramírez-Aportela E.
  • Filipovic J.
  • Carazo J.M.
  • Sorzano C.O.S.

JOURNAL OF MOLECULAR BIOLOGY - 1/5/2023

10.1016/j.jmb.2023.168088

Cite count: 3 (Web of Science) 3 (Scopus)
  • JCR Impact Factor: 4.7 (2023)
  • CiteScore: 10.8 (2022)
  • SJR: 2.421 (2022
  • SNIP: 1.281 (2022
  • JCR 5-year Impact Factor: 4.9
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
Open Access

A Fijivirus Major Viroplasm Protein Shows RNA-Stimulated ATPase Activity by Adopting Pentameric and Hexameric Assemblies of Dimers

  • Llauger G.
  • Melero R.
  • Monti D.
  • Sycz G.
  • Huck-Iriart C.
  • Cerutti M.L.
  • Klinke S.
  • Mikkelsen E.
  • Tijman A.
  • Arranz R.
  • Alfonso V.
  • Arellano S.M.
  • Goldbaum F.A.
  • Sterckx Y.G.J.
  • Carazo J.M.
  • Kaufman S.B.
  • Dans P.D.
  • Del Vas M.
  • Otero L.H.
... View more Collapse

MBIO - 25/4/2023

10.1128/mbio.00023-23

Cite count: 1 (Web of Science)
  • JCR Impact Factor: 5.1 (2023)
  • CiteScore: 10.8 (2022)
  • SJR: 2.283 (2022
  • SNIP: 1.357 (2022
  • JCR 5-year Impact Factor: 5.9
  • JCR Categories: MICROBIOLOGY

A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis

  • Fernández-Giménez E.
  • Martínez M.M.
  • Marabini R.
  • Strelak D.
  • Sánchez-García R.
  • Carazo J.M.
  • Sorzano C.O.S.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/12/2023

10.1016/j.jsb.2023.108024

Cite count: 1 (Web of Science)
  • JCR Impact Factor: 3 (2023)
  • CiteScore: 6.1 (2022)
  • SJR: 1.582 (2022
  • SNIP: 0.773 (2022
  • JCR 5-year Impact Factor: 2.5
  • JCR Categories: BIOPHYSICS

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
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Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

METHODS IN ENZYMOLOGY, VOL 482: CRYO-EM, PART B: 3-D RECONSTRUCTION - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 69 (Web of Science) 52 (Scopus)
  • JCR Impact Factor: 1.626 (2010)
  • CiteScore: 2.6 (2020)
  • SJR: 1.408 (2010
  • SNIP: 0.493 (2010
  • JCR 5-year Impact Factor: 2.185
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods For Three-dimensional Visualization of Structures In The Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Fast Global Image Alignment Algorithm for CryoEM through Vector Compression

  • Zarrabeitia O.L.
  • Ramirez-Aportela E.
  • Carazo J.M.
  • Sorzano C.O.S.

Proceedings - International Symposium on Biomedical Imaging - 1/1/2024

10.1109/isbi56570.2024.10635352

Cite count:

3DBionotes COVID-19 Structural Hub: a central resource for validation information and refined models

  • Jose Ramon Macias
  • Carolina Simon-Guerrero
  • Erney Ramírez-Aportela
  • Jose Luis Vilas Prieto
  • Marta Martínez González
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia
... View more Collapse

21st European Conference On Computational Biology - 2022

  • ORCID

Evolutionary genomics of SARS-CoV-2: keys for viral success (Conf. Invitada: S2.2 2)

  • Miguel Álvarez-Herrera
  • Jose Maria Carazo Garcia
  • Comas I
  • Mireia Coscolla
  • Santiago F. Elena
  • Clara Francés-Gómez
  • Maria Luisa Franco
  • Daniel García Rasines
  • Ron Geller
  • Carmen Gil
  • Fernando González-Candelas
  • Julia Hillung
  • José Luis Llácer
  • Marina, A.
  • María Carmen Marques
  • Roi Naveiro Flores
  • David Rios Insua
  • Simón Rodríguez Santana
  • Paula Ruiz-Rodriguez
  • Carlos Óscar S. Sorzano
  • Eugenia Ulzurum
  • Marçal Vilar
... View more Collapse

44º Congreso de la Sebbm - 2022

  • ORCID

Imaging Data: Adding a new type of annotations to 3DBionotes-WS

  • Carolina Simón Guerrero
  • Jose Ramon Macias
  • Erney Ramírez-Aportela
  • Jose Luis Vilas Prieto
  • Marta Martinez Gonzalez
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia
... View more Collapse

21st European Conference On Computational Biology - 2022

  • ORCID

Stream processing of CryoElectron Microscopy images at the acquisition site

  • D. Marchán
  • A. García-Mena
  • P. Conesa
  • Francisco Javier Chichón García
  • R. Arranz
  • Y. Fonseca-Reyna
  • L. del Caño
  • I. Sánchez-López
  • M. Iceta
  • Jose Maria Carazo Garcia
  • Carlos Oscar S. Sorzano
... View more Collapse

Instruct Biennial Structural Biology Conference - 2022

  • ORCID

Evolutionary genomics of SARS-CoV-2: key for viral success

  • Álvarez-Herrera, M.
  • Jose Maria Carazo Garcia
  • Comas I
  • Coscollà, M.
  • Santiago F. Elena
  • Francés-Gómez, C.
  • Franco, M.L.
  • García Rasines, D.
  • Geller, R.
  • Carmen Gil
  • Fernando Gonzalez-Candelas
  • Hillung, J.
  • José Luis Llácer
  • Marina, A.
  • Marqués, M.C.
  • Naveiro Flores, R.
  • Ríos, D.
  • Rodríguez Santana, S.
  • Paula Ruiz-Rodriguez
  • Carlos Oscar S. Sorzano
  • Ulzurum, E.
  • Vidal, M.
... View more Collapse

44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022

  • ORCID

The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation

  • Tiziana Ginex
  • Wieczór, M.
  • Krieger, J.
  • Orozco, M.
  • Jose Maria Carazo Garcia
  • Carmen Gil

Xx Congreso de la Sociedad Española de Química Terapéutica - 2022

  • ORCID

Caracterización estructural de la proteína mayoritaria de viroplasma P9-1 del virus del mal de Río Cuarto

  • Gabriela Llauger
  • Roberto Melero
  • Demian Monti
  • Gabriela Sycz
  • Cristina Huck-Iriart
  • María L. Cerutti
  • Sebastian Klinke
  • Rocío Arranz
  • Yann G.Sterckx
  • Vcitoria Alonso
  • Sofia Maite Arellano
  • Jose Maria Carazo Garcia
  • FernandoA.Goldbaum
  • Mariana del VAs
  • Lisandro H. Otero
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Xiii Congreso Argentino de Virología 2021 - 2021

  • ORCID

Mesa redonda sobre investigadores y Ciencia Abierta

  • Alonso, F.
  • Emilio Cano
  • María P. Martín
  • Jose Maria Carazo Garcia
  • Jan Thiele

5as Jornadas de Análisis de la Red de Bibliotecas y Archivos del Csic. Bibliotecas y Archivos del Csic Por la Ciencia Abierta: Presente y Futuro - 2019

  • ORCID

AutoRes: Structure resolution determination through autocorrelation analysis

  • J. Vargas
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia

3dem Gordon Research Conference 2015 - 2015

  • ORCID

This author has no patents.

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v2

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... View more Collapse

05/2020

10.1101/2020.05.12.069831

  • ORCID

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... View more Collapse

03/2018

10.1101/279398

  • ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... View more Collapse

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Cite count: 1 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 9.432 (2009)
  • CiteScore: 16.2 (2020)
  • SJR: 7.025 (2009
  • SNIP: 2.563 (2009
  • JCR 5-year Impact Factor: 10.312
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)

Scopus: 52

Web of Science: 56

Scopus: 178

Web of Science: 211

Last data update: 11/23/24 5:42 AM
Next scheduled update: 11/30/24 3:00 AM