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Carazo García, José María Author

3DBIONOTES: A unified, enriched and interactive view of macromolecular information

  • Tabas-Madrid, D.
  • Segura, J.
  • Sanchez-Garcia, R.
  • Cuenca-Alba, J.
  • Sorzano, C. O. S.
  • Carazo, J. M.

JOURNAL OF STRUCTURAL BIOLOGY - 1/5/2016

10.1016/j.jsb.2016.02.007 View source

Cite count: 6 (Web of Science) 6 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.767 (2016)
  • CiteScore: 5.5 (2020)
  • SJR: 2.732 (2016
  • SNIP: 0.904 (2016
  • JCR 5-year Impact Factor: 3.235
  • JCR Categories: CELL BIOLOGY
  • SJR Categories: Structural Biology (Q1)

3DBionotes Covid-19 Edition

  • Macias JR
  • Sanchez-Garcia R
  • Conesa P
  • Ramirez-Aportela E
  • Martinez Gonzalez M
  • Wert-Carvajal C
  • Parra-Perez AM
  • Segura Mora J
  • Horrell S
  • Thorn A
  • Carazo JM
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ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES - 15/8/2021

10.1093/bioinformatics/btab397

Cite count:

3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures

  • Segura, Joan
  • Sanchez-Garcia, Ruben
  • Martinez, Marta
  • Cuenca-Alba, Jesus
  • Tabas-Madrid, Daniel
  • Sorzano, C. O. S.
  • Carazo, J. M.
... View more Collapse

BIOINFORMATICS - 15/11/2017

10.1093/bioinformatics/btx483 View source

Cite count: 15 (Web of Science) 16 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.481 (2017)
  • CiteScore: 9.9 (2020)
  • SJR: 6.14 (2017
  • SNIP: 2.546 (2017
  • JCR 5-year Impact Factor: 8.561
  • JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)

3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations

  • Segura J.
  • Sanchez-Garcia R.
  • Sorzano C.
  • Carazo J.
  • Valencia A.

BIOINFORMATICS - 15/9/2019

10.1093/bioinformatics/btz118

Cite count: 9 (Web of Science) 3 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.61 (2019)
  • CiteScore: 9.9 (2020)
  • SJR: 3.567 (2019
  • SNIP: 1.864 (2019
  • JCR 5-year Impact Factor: 9.853
  • JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
Open Access

3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling

  • Segura, Joan
  • Sanchez-Garcia, Ruben
  • Tabas-Madrid, Daniel
  • Cuenca-Alba, Jesus
  • Sorzano, Carlos Oscar S.
  • Maria Carazo, Jose

BIOPHYSICAL JOURNAL - 23/2/2016

10.1016/j.bpj.2015.11.3519 View source

Cite count: 15 (Web of Science) 11 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 3.656 (2016)
  • CiteScore: 6.3 (2020)
  • SJR: 1.988 (2016
  • SNIP: 1.042 (2016
  • JCR 5-year Impact Factor: 3.743
  • JCR Categories: BIOPHYSICS
  • SJR Categories: Biophysics (Q1)

3-DIMENSIONAL ARCHITECTURE OF THE ESCHERICHIA-COLI RIBOSOME

  • WAGENKNECHT, T
  • RADERMACHER, M
  • CARAZO, JM
  • VERSCHOOR, A
  • BOUBLIK, M
  • FRANK, J

BIOPHYSICAL JOURNAL - 2/1988

Cite count:

3-DIMENSIONAL MATCHING OF MACROMOLECULAR STRUCTURES OBTAINED FROM ELECTRON-MICROSCOPY - AN APPLICATION TO THE 70S AND 50S ESCHERICHIA-COLI RIBOSOMAL PARTICLES

  • CARAZO, JM
  • FRANK, J

ULTRAMICROSCOPY - 1/1/1988

10.1016/0304-3991(88)90401-9

Cite count: 10 (Web of Science) 9 (Scopus)
  • CiteScore: 5 (2020)

3-DIMENSIONAL RECONSTRUCTION OF BACTERIOPHAGE PHI-29 NECK PARTICLES AT 2.2 NM RESOLUTION

  • CARAZO, JM
  • SANTISTEBAN, A
  • CARRASCOSA, JL

JOURNAL OF MOLECULAR BIOLOGY - 5/05/1985

10.1016/0022-2836(85)90282-7

Cite count: 42 (Web of Science) 38 (Scopus)
  • CiteScore: 8.5 (2020)

3-DIMENSIONAL RECONSTRUCTION OF THE CONNECTOR OF BACTERIOPHAGE PHI-29 AT 1.8 NM RESOLUTION

  • CARAZO, JM
  • DONATE, LE
  • HERRANZ, L
  • SECILLA, JP
  • CARRASCOSA, JL

JOURNAL OF MOLECULAR BIOLOGY - 20/12/1986

10.1016/0022-2836(86)90033-1

Cite count: 65 (Web of Science) 58 (Scopus)
  • CiteScore: 8.5 (2020)
Open Access

3-DIMENSIONAL RECONSTRUCTION OF THE RIBOSOME FROM ESCHERICHIA-COLI

  • WAGENKNECHT, T
  • CARAZO, JM
  • RADERMACHER, M
  • FRANK, J

BIOPHYSICAL JOURNAL - 1/3/1989

10.1016/s0006-3495(89)82839-5

Cite count: 36 (Web of Science) 34 (Scopus)
  • CiteScore: 6.3 (2020)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods For Three-dimensional Visualization of Structures In The Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

METHODS IN ENZYMOLOGY, VOL 482: CRYO-EM, PART B: 3-D RECONSTRUCTION - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 69 (Web of Science) 52 (Scopus)
  • JCR Impact Factor: 1.626 (2010)
  • CiteScore: 2.6 (2020)
  • SJR: 1.408 (2010
  • SNIP: 0.493 (2010
  • JCR 5-year Impact Factor: 2.185
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
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Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

3DBionotes COVID-19 Structural Hub: a central resource for validation information and refined models

  • Jose Ramon Macias
  • Carolina Simon-Guerrero
  • Erney Ramírez-Aportela
  • Jose Luis Vilas Prieto
  • Marta Martínez González
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia
... View more Collapse

21st European Conference On Computational Biology - 2022

  • ORCID

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Cite count:
  • CiteScore: 4.6 (2020)

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

ELECTRON MICROSCOPY 1994, VOLS 3A AND 3B - 1994

Cite count:

3D reconstruction of 2D crystals from projections in real space

  • Marabini, R
  • Herman, GT
  • Sorzano, COS
  • Carazo, JM
  • Fernandez, JJ
  • Matej, S
  • IEEE
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2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029351 View source

Cite count: 1 (Scopus)

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Cite count:

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

ELECTRON MICROSCOPY 1998, VOL 1 - 1998

Cite count:

A new image translational alignment method with an application in electron crystallography

  • Roca, R
  • Danielsson, PE
  • Jose Maria Carazo Garcia
  • Jose-Jesus Fernandez

ELECTRON MICROSCOPY 1998, VOL 1 - 1998

Cite count:

AN IMAGE PROCESSING APPROACH TO THE SIMULATION OF ELECTRON MICROSCOPY VOLUMES OF ATOMIC STRUCTURES

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
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2014 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP) - 28/01/2014

10.1109/icip.2014.7025420 View source

Cite count:
  • SJR Categories: Computer Vision and Pattern Recognition

A semantic mediation approach for problems in computational molecular biology

  • Chagoyen M.
  • Kurul M.
  • De-Alarcon P.
  • Santini S.
  • Ludäscher B.
  • Carazo J.
  • Gupta A.
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PROCEEDINGS OF THE 2003 IEEE BIOINFORMATICS CONFERENCE - 1/1/2003

10.1109/csb.2003.1227339

Cite count:
  • SJR Categories: Transportation

AutoRes: Structure resolution determination through autocorrelation analysis

  • J. Vargas
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia

3dem Gordon Research Conference 2015 - 2015

  • ORCID

This author has no patents.

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... View more Collapse

03/2018

10.1101/279398

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... View more Collapse

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Cite count: 1 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 9.432 (2009)
  • CiteScore: 16.2 (2020)
  • SJR: 7.025 (2009
  • SNIP: 2.563 (2009
  • JCR 5-year Impact Factor: 10.312
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... View more Collapse

05/2020

10.1101/2020.05.12.069831

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v2

  • ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Scopus: 52

Web of Science: 56

Scopus: 178

Web of Science: 211

Last data update: 11/23/24 5:42 AM
Next scheduled update: 11/30/24 3:00 AM