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Carazo García, José María Author

ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis

  • Herreros D.
  • Kiska J.
  • Ramírez-Aportela E.
  • Filipovic J.
  • Carazo J.M.
  • Sorzano C.O.S.

JOURNAL OF MOLECULAR BIOLOGY - 1/5/2023

10.1016/j.jmb.2023.168088

Cite count: 3 (Web of Science) 3 (Scopus)
  • JCR Impact Factor: 4.7 (2023)
  • CiteScore: 10.8 (2022)
  • SJR: 2.421 (2022
  • SNIP: 1.281 (2022
  • JCR 5-year Impact Factor: 4.9
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
Open Access

XTEND: Extending the depth of field in cryo soft X-ray tomography

  • Otón J.
  • Pereiro E.
  • Conesa J.
  • Chichón F.
  • Luque D.
  • Rodríguez J.
  • Pérez-Berná A.
  • Sorzano C.
  • Klukowska J.
  • Herman G.
  • Vargas J.
  • Marabini R.
  • Carrascosa J.
  • Carazo J.
... View more Collapse

SCIENTIFIC REPORTS - 4/4/2017

10.1038/srep45808

Cite count: 14 (Web of Science) 12 (Scopus)
  • JCR Quartile: Q1 (2017)
  • SJR Quartile: Q1
  • JCR Impact Factor: 4.122 (2022)
  • Category normalized Impact: 0.886 (2017)
  • CiteScore: 7.1 (2020)
  • SJR: 1.533 (2017
  • SNIP: 1.263 (2017
  • JCR 5-year Impact Factor: 4.609
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)
Open Access

X-ray structure of full-length human RuvB-Like 2-mechanistic insights into coupling between ATP binding and mechanical action

  • Silva, Sara T. N.
  • Brito, Jose A.
  • Arranz, Rocio
  • Sorzano, Carlos Oscar S.
  • Ebel, Christine
  • Doutch, James
  • Tully, Mark D.
  • Carazo, Jose-Maria
  • Carrascosa, Jose L.
  • Matias, Pedro M.
  • Bandeiras, Tiago M.
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SCIENTIFIC REPORTS - 13/9/2018

10.1038/s41598-018-31997-z View source

Cite count: 19 (Web of Science) 10 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 4.011 (2018)
  • CiteScore: 4.29 (2018)
  • SJR: 1.414 (2018
  • SNIP: 1.24 (2018
  • JCR 5-year Impact Factor: 4.525
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)

Xmipp: An image processing package for electron microscopy

  • Marabini, R.
  • Masegosa, I.M.
  • San Martín, M.C.
  • Marco, S.
  • Fernández, J.J.
  • De La Fraga, L.G.
  • Vaquerizo, C.
  • Carazo, J.M.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/01/1996

10.1006/jsbi.1996.0036 View source

Cite count: 171 (Web of Science) 169 (Scopus)
  • JCR Impact Factor: 3.071 (2022)
  • Category normalized Impact: 3.149 (1996)
  • CiteScore: 5.5 (2020)

XMIPP:: a new generation of an open-source image processing package for electron microscopy

  • Sorzano, C.O.S.
  • Marabini, R.
  • Velázquez-Muriel, J.
  • Bilbao-Castro, J.R.
  • Scheres, S.H.W.
  • Carazo, J.M.
  • Pascual-Montano, A.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2004

10.1016/j.jsb.2004.06.006 View source

Cite count: 387 (Web of Science) 363 (Scopus)
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q2
  • JCR Impact Factor: 3.132 (2022)
  • Category normalized Impact: 6.073 (2004)
  • CiteScore: 5.5 (2020)
  • SJR: 2.385 (2004
  • SNIP: 1.286 (2004
  • SJR Categories: Structural Biology (Q2)

Xmipp 3.0: An improved software suite for image processing in electron microscopy

  • de la Rosa-Trevin, J. M.
  • Oton, J.
  • Marabini, R.
  • Zaldivar, A.
  • Vargas, J.
  • Carazo, J. M.
  • Sorzano, C. O. S.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2013

10.1016/j.jsb.2013.09.015 View source

Cite count: 228 (Web of Science) 172 (Scopus)
  • JCR Quartile: Q2 (2013)
  • SJR Quartile: Q1
  • JCR Impact Factor: 3.369 (2013)
  • Category normalized Impact: 5.507 (2013)
  • CiteScore: 5.5 (2020)
  • SJR: 2.596 (2013
  • SNIP: 1.256 (2013
  • JCR 5-year Impact Factor: 3.407
  • JCR Categories: CELL BIOLOGY
  • SJR Categories: Structural Biology (Q1)
Open Access

West-Life: A Virtual Research Environment for structural biology

  • Morris C.
  • Andreetto P.
  • Banci L.
  • Bonvin A.M.J.J.
  • Chojnowski G.
  • Cano L.d.
  • Carazo J.M.
  • Conesa P.
  • Daenke S.
  • Damaskos G.
  • Giachetti A.
  • Haley N.E.C.
  • Hekkelman M.L.
  • Heuser P.
  • Joosten R.P.
  • Kouřil D.
  • Křenek A.
  • Kulhánek T.
  • Lamzin V.S.
  • Nadzirin N.
  • Perrakis A.
  • Rosato A.
  • Sanderson F.
  • Segura J.
  • Schaarschmidt J.
  • Sobolev E.
  • Traldi S.
  • Trellet M.E.
  • Velankar S.
  • Verlato M.
  • Winn M.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY-X - 1/01/2019

10.1016/j.yjsbx.2019.100006

Cite count: 2 (Web of Science) 2 (Scopus)
  • JCR Impact Factor: 3.071 (null)
  • CiteScore: 1.7 (2020)
  • JCR 5-year Impact Factor: 3.529
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
  • SJR Categories: Structural Biology

Volurnetric restrictions in single particle 3DEM reconstruction

  • Sorzano, C.O.S.
  • Velázquez-Muriel, J.A.
  • Marabini, R.
  • Herman, G.T.
  • Carazo, J.M.

PATTERN RECOGNITION - 1/2/2008

10.1016/j.patcog.2007.06.010 View source

Cite count: 10 (Web of Science) 8 (Scopus)
  • JCR Quartile: Q2 (2008)
  • SJR Quartile: Q1
  • JCR Impact Factor: 3.279 (2022)
  • Category normalized Impact: 0.326 (2008)
  • CiteScore: 15.7 (2020)
  • SJR: 1.196 (2008
  • SNIP: 2.213 (2008
  • SJR Categories: Artificial Intelligence (Q1); Computer Vision and Pattern Recognition (Q1); Signal Processing (Q1); Software (Q1)
Open Access

VARIATIONS OF THE 3-DIMENSIONAL STRUCTURE OF THE ESCHERICHIA-COLI RIBOSOME IN THE RANGE OF OVERLAP VIEWS - AN APPLICATION OF THE METHODS OF MULTICONE AND LOCAL SINGLE-CONE 3-DIMENSIONAL RECONSTRUCTION

  • CARAZO, JM
  • WAGENKNECHT, T
  • FRANK, J

BIOPHYSICAL JOURNAL - 1/3/1989

10.1016/s0006-3495(89)82840-1

Cite count: 27 (Web of Science) 25 (Scopus)
  • CiteScore: 6.3 (2020)

Validation of electron microscopy initial models via small angle X-ray scattering curves

  • Jiménez A.
  • Jonic S.
  • Majtner T.
  • Otón J.
  • Vilas J.
  • Maluenda D.
  • Mota J.
  • Ramírez-Aportela E.
  • Martínez M.
  • Rancel Y.
  • Segura J.
  • Sánchez-García R.
  • Melero R.
  • Del Cano L.
  • Conesa P.
  • Skjaerven L.
  • Marabini R.
  • Carazo J.
  • Sorzano C.
... View more Collapse

BIOINFORMATICS - 15/7/2019

10.1093/bioinformatics/bty985

Cite count: 7 (Web of Science) 1 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.61 (2019)
  • CiteScore: 9.9 (2020)
  • SJR: 3.567 (2019
  • SNIP: 1.864 (2019
  • JCR 5-year Impact Factor: 9.853
  • JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
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Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

METHODS IN ENZYMOLOGY, VOL 482: CRYO-EM, PART B: 3-D RECONSTRUCTION - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 69 (Web of Science) 52 (Scopus)
  • JCR Impact Factor: 1.626 (2010)
  • CiteScore: 2.6 (2020)
  • SJR: 1.408 (2010
  • SNIP: 0.493 (2010
  • JCR 5-year Impact Factor: 2.185
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods For Three-dimensional Visualization of Structures In The Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Zero-loss P-contrast in EFTEM

  • Rietzel, E
  • Schorsch, P
  • Muller, H
  • Marabini, R
  • Sorzano, C
  • Carazo, JM
  • Schimpf, U
  • Leue, C
  • Holmes, KC
  • Schroder, RR
  • Benavides, HAC
  • Yacaman, MJ
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ELECTRON MICROSCOPY 1998, VOL 4 - 1998

Cite count:

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R.
  • Herman G.
  • Sorzano C.
  • Carazo J.

2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029339 View source

Cite count: 5 (Scopus)

Two-way clustering of gene expression profiles by sparse matrix factorization

  • Pascual-Montano A.
  • Carmona-Sáez P.
  • Pascual-Marqui R.
  • Tirado F.
  • Carazo J.

2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005

10.1109/csbw.2005.137

Cite count: 6 (Scopus)
  • SJR Categories: Engineering (miscellaneous)

Towards a data-bank of three-dimensional macromolecular structures: A WWW-based prototype

  • CARAZO, JM
  • MARABINI, R
  • VAQUERIZO, C
  • FRANK, J
  • Jouffrey, B
  • Colliex, C

ELECTRON MICROSCOPY 1994, VOL 1 - 1994

Cite count:

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

  • Carazo J.M.
  • Carrascosa J.
  • Santisteban A.

1/12/1985

Cite count:

Three-dimensional domain mapping in the bacteriophage φ29 connector

  • Jose Valpuesta
  • Mikel Valle
  • Jose-Jesus Fernandez
  • Jose Maria Carazo Garcia
  • Albar, JP
  • Leonor Kremer
  • José L. Carrascosa
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ELECTRON MICROSCOPY 1998, VOL 1 - 1998

Cite count:

The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation

  • Tiziana Ginex
  • Wieczór, M.
  • Krieger, J.
  • Orozco, M.
  • Jose Maria Carazo Garcia
  • Carmen Gil

Xx Congreso de la Sociedad Española de Química Terapéutica - 2022

  • ORCID

STUDY OF THE COLLARS EXTRACTED FROM T3 AND 029 VIRAL PARTICLES

  • MARCO, S
  • VALPUESTA, JM
  • CARAZO, JM
  • MARABINI, R
  • FUJISAWA, H
  • CARRASCOSA, JL
  • Jouffrey, B
  • Colliex, C
... View more Collapse

ELECTRON MICROSCOPY 1994, VOLS 3A AND 3B - 1994

Cite count:

Structure of DnaB and DnaB.DnaC complex.

  • Carmen San Martín
  • Radermacher, M
  • Fedtke, B
  • Engel, A
  • Miles, CS
  • Dixon, NE
  • Jose Maria Carazo Garcia
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ELECTRON MICROSCOPY 1998, VOL 1 - 1998

Cite count:

Stream processing of CryoElectron Microscopy images at the acquisition site

  • D. Marchán
  • A. García-Mena
  • P. Conesa
  • Francisco Javier Chichón García
  • R. Arranz
  • Y. Fonseca-Reyna
  • L. del Caño
  • I. Sánchez-López
  • M. Iceta
  • Jose Maria Carazo Garcia
  • Carlos Oscar S. Sorzano
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Instruct Biennial Structural Biology Conference - 2022

  • ORCID

This author has no patents.

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v2

  • ORCID

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
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05/2020

10.1101/2020.05.12.069831

  • ORCID
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
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PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Cite count: 1 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 9.432 (2009)
  • CiteScore: 16.2 (2020)
  • SJR: 7.025 (2009
  • SNIP: 2.563 (2009
  • JCR 5-year Impact Factor: 10.312
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
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03/2018

10.1101/279398

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

Scopus: 52

Web of Science: 56

Scopus: 178

Web of Science: 211

Last data update: 11/23/24 5:42 AM
Next scheduled update: 11/30/24 3:00 AM