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Carazo García, José María Autor

Open Access

Modeling experimental image formation for likelihood-based classification of electron microscopy

  • Scheres, Sjors H. W.
  • Nunez-Ramirez, Rafael
  • Gomez-Llorente, Yacob
  • Martin, Carmen San
  • Eggermont, Paul P. B.
  • Carazo, Jose Maria

STRUCTURE - 16/10/2007

10.1016/j.str.2007.09.003

Número de citas: 58 (Web of Science) 53 (Scopus)
  • Cuartil JCR: Q1 (2007)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 5,231 (2022)
  • Impacto Normalizado por Categoría: 1,101 (2007)
  • CiteScore: 9 (2020)
  • SJR: 4,424 (2007)
  • SNIP: 1,273 (2007)
  • Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)

Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function

  • Sorzano, C. O. S.
  • Jonic, S.
  • Nunez-Ramirez, R.
  • Boisset, N.
  • Carazo, J. M.

JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2007

10.1016/j.jsb.2007.08.013 Ver en origen

Número de citas: 42 (Web of Science) 35 (Scopus)
  • Cuartil JCR: Q2 (2007)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 3,677 (2022)
  • Impacto Normalizado por Categoría: 0,759 (2007)
  • CiteScore: 5,5 (2020)
  • SJR: 3,196 (2007)
  • SNIP: 1,173 (2007)
  • Categorías SJR: Structural Biology (Q1)

Volumetric restrictions in single particle 3DEM reconstruction

  • Sorzano, C.O.S.
  • Velázquez-Muriel, J.A.
  • Marabini, R.
  • Herman, G.T.
  • Carazo, J.M.

Pattern Recognition - 1/02/2008

10.1016/j.patcog.2007.06.010 Ver en origen

Número de citas: 10 (Web of Science) 8 (Scopus)
  • Cuartil JCR: Q2 (2008)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 3,279 (2022)
  • Impacto Normalizado por Categoría: 0,326 (2008)
  • CiteScore: 15,7 (2020)
  • SJR: 1,196 (2008)
  • SNIP: 2,213 (2008)
  • Categorías SJR: Artificial Intelligence (Q1); Computer Vision and Pattern Recognition (Q1); Signal Processing (Q1); Software (Q1)

ChIPCodis: Mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data

  • Abascal, Federico
  • Carmona-Saez, Pedro
  • Carazo, Jose-Maria
  • Pascual-Montano, Alberto

Bioinformatics - 1/05/2008

10.1093/bioinformatics/btn094

Número de citas: 7 (Web of Science) 7 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 9,9 (2020)
  • SJR: 3,129 (2008)
  • SNIP: 1,806 (2008)
  • Categorías SJR: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)

Interoperability with Moby 1.0 - It\'s better than sharing your toothbrush!

  • Wilkinson, Mark D.
  • Senger, Martin
  • Kawas, Edward
  • Bruskiewich, Richard
  • Gouzy, Jerome
  • Noirot, Celine
  • Bardou, Philippe
  • Ng, Ambrose
  • Haase, Dirk
  • Saiz, Enrique de Andres
  • Wang, Dennis
  • Gibbons, Frank
  • Gordon, Paul M. K.
  • Sensen, Christoph W.
  • Carrasco, Jose Manuel Rodriguez
  • Fernandez, Jose M.
  • Shen, Lixin
  • Links, Matthew
  • Ng, Michael
  • Opushneva, Nina
  • Neerincx, Pieter B. T.
  • Leunissen, Jack A. M.
  • Ernst, Rebecca
  • Twigger, Simon
  • Usadel, Bjorn
  • Good, Benjamin
  • Wong, Yan
  • Stein, Lincoln
  • Crosby, William
  • Karlsson, Johan
  • Royo, Romina
  • Parraga, Ivan
  • Ramirez, Sergio
  • Gelpi, Josep Lluis
  • Trelles, Oswaldo
  • Pisano, David G.
  • Jimenez, Natalia
  • Kerhornou, Arnaud
  • Rosset, Roman
  • Zamacola, Leire
  • Tarraga, Joaquin
  • Huerta-Cepas, Jaime
  • Carazo, Jose Maria
  • Dopazo, Joaquin
  • Guigo, Roderic
  • Navarro, Arcadi
  • Orozco, Modesto
  • Valencia, Alfonso
  • Claros, M. Gonzalo
  • Perez, Antonio J.
  • Aldana, Jose
  • Rojano, M. Mar
  • Cruz, Raul Fernandez-Santa
  • Navas, Ismael
  • Schiltz, Gary
  • Farmer, Andrew
  • Gessler, Damian
  • Schoof, Heiko
  • Groscurth, Andreas
  • BioMoby Consortium
... Ver más Contraer

Briefings In Bioinformatics - 1/05/2008

10.1093/bib/bbn003

Número de citas: 54 (Web of Science) 77 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 16,6 (2020)
  • SJR: 2,045 (2008)
  • SNIP: 1,589 (2008)
  • Categorías SJR: Information Systems (Q1); Molecular Biology (Q2)

Design and analysis of an object-oriented discrete-event simulation engine for ATM telecommunication networks

  • Cortes P.
  • Munuzuri J.
  • Onieva L.
  • Carazo J.M.

International Journal of Simulation and Process Modelling - 1/1/2008

10.1504/ijspm.2008.020612

Número de citas:
  • Cuartil SJR: Q3
  • CiteScore: 2,3 (2020)
  • SJR: 0,233 (2008)
  • SNIP: 0,97 (2008)
  • Categorías SJR: Computer Science Applications (Q3); Modeling and Simulation (Q3); Applied Mathematics (Q4)
Open Access

Assessment of protein set coherence using functional annotations

  • Chagoyen, Monica
  • Carazo, Jose M.
  • Pascual-Montano, Alberto

Bmc Bioinformatics - 20/10/2008

10.1186/1471-2105-9-444

Número de citas: 11 (Web of Science) 10 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 5,7 (2020)
  • SJR: 1,951 (2008)
  • SNIP: 1,116 (2008)
  • Categorías SJR: Applied Mathematics (Q1); Biochemistry (Q1); Computer Science Applications (Q1); Molecular Biology (Q2); Structural Biology (Q2)
Open Access

Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA plus hexameric helicase

  • Brewster, Aaron S.
  • Wang, Ganggang
  • Yu, Xian
  • Greenleaf, William B.
  • Maria Carazo, Jose
  • Tjajadia, Matthew
  • Klein, Michael G.
  • Chen, Xiaojiang S.
... Ver más Contraer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 23/12/2008

10.1073/pnas.0808037105

Número de citas: 108 (Web of Science) 107 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 16,2 (2020)
  • SJR: 7,034 (2008)
  • SNIP: 2,429 (2008)
  • Categorías SJR: Multidisciplinary (Q1)

Image processing for electron microscopy single-particle analysis using XMIPP

  • Scheres, S.H.W.
  • Núñez-Ramírez, R.
  • Sorzano, C.O.S.
  • Carazo, J.M.
  • Marabini, R.

NATURE PROTOCOLS - 1/5/2008

10.1038/nprot.2008.62 Ver en origen

Número de citas: 268 (Web of Science) 265 (Scopus)
  • Cuartil JCR: Q1 (2008)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 4,17 (2022)
  • Impacto Normalizado por Categoría: 5,795 (2008)
  • CiteScore: 19,8 (2020)
  • SJR: 2,937 (2008)
  • SNIP: 1,331 (2008)
  • Categorías SJR: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1)

Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs

  • Bilbao-Castro J.
  • Marabini R.
  • Sorzano C.
  • García I.
  • Carazo J.
  • Fernández J.

Journal of Structural Biology - 1/01/2009

10.1016/j.jsb.2008.09.009

Número de citas: 16 (Web of Science) 16 (Scopus)
  • Cuartil JCR: Q2 (2009)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 3,673 (2009)
  • Impacto Normalizado por Categoría: 0,339 (2009)
  • CiteScore: 5,5 (2020)
  • SJR: 3,006 (2009)
  • SNIP: 1,22 (2009)
  • Impacto JCR a 5 años: 3,925
  • Categorías JCR: BIOPHYSICS
  • Categorías SJR: Structural Biology (Q1)
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... Ver más Contraer

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 Ver en origen

Número de citas: 1 (Web of Science) 4 (Scopus)
  • CiteScore: 0,8 (2020)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... Ver más Contraer

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Número de citas: 1 (Web of Science) 1 (Scopus)
  • CiteScore: 1,8 (2020)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 67 (Web of Science) 52 (Scopus)
  • Factor Impacto JCR: 1,626 (2010)
  • CiteScore: 2,6 (2020)
  • SJR: 1,408 (2010)
  • SNIP: 0,493 (2010)
  • Impacto JCR a 5 años: 2,185
  • Categorías JCR: BIOCHEMICAL RESEARCH METHODS
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Número de citas: 14 (Scopus)
  • Cuartil SJR: Q3
  • CiteScore: 2,2 (2020)
  • SJR: 0,751 (2013)
  • SNIP: 0,362 (2013)
  • Categorías SJR: Genetics (Q3); Molecular Biology (Q3)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 9 (Web of Science) 4 (Scopus)
  • Cuartil JCR: Q2 (2014)
  • Impacto Normalizado por Categoría: 0,312 (2014)
  • CiteScore: 0,8 (2020)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)
  • Cuartil JCR: Q2 (2014)
  • Impacto Normalizado por Categoría: 0,156 (2014)
  • CiteScore: 0,8 (2020)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... Ver más Contraer

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 5 (Web of Science) 1 (Scopus)
  • Cuartil JCR: Q2 (2021)
  • Impacto Normalizado por Categoría: 0,595 (2021)
  • CiteScore: 2,2 (2020)
  • SJR: 0,711 (2020)
  • SNIP: 0,57 (2020)

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

  • Carazo J.M.
  • Carrascosa J.
  • Santisteban A.

1/12/1985

Número de citas:

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Número de citas:
  • CiteScore: 4,6 (2020)

Parallel architecture for real-time speech recognition in Spanish

  • Alexandres S.
  • Moran J.
  • Carazo J.
  • Santos A.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/12/1990

Número de citas: 2 (Scopus)
  • CiteScore: 4,6 (2020)

Image reconstruction on hypercube computers

  • Zapata E.L.
  • Benavides I.
  • Rivera F.F.
  • Bruguera J.D.
  • Carazo J.M.

1/12/1990

Número de citas: 4 (Scopus)
Open Access

Mapping strategies for sequential sequence comparison algorithms on LAN-based message passing architectures

  • Trelles-Salazar O.
  • Zapata E.L.
  • Carazo J.M.

Lecture Notes In Computer Science - 1/1/1994

10.1007/bfb0020372

Número de citas: 6 (Scopus)
  • CiteScore: 1,8 (2020)

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Número de citas:

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

Electron Microscopy 1994, Vols 3a and 3b - 1994

  • ORCID

Electron tomography of biological specimens

  • Marabini R.
  • Carmen San Martin M.
  • Carazo J.

Studies in Health Technology and Informatics - 1/1/1997

10.3233/978-1-60750-874-8-53

Número de citas: 2 (Scopus)
  • CiteScore: 1,2 (2020)

Biological sequence analysis on distributed-shared memory multiprocessors

  • Rodriguez A.
  • de la Fraga L.G.
  • Zapata E.L.
  • Carazo J.M.
  • Trelles O.

Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998

10.1109/empdp.1998.647174

Número de citas: 1 (Scopus)

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Este autor no tiene patentes.

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Número de citas: 62 (Scopus)
  • CiteScore: 5 (2020)

New phylogenetic venues opened by a novel implementation of the DNAml algorithm

  • Trelles, O
  • Ceron, C
  • Wang, HC
  • Dopazo, J
  • Carazo, JM

Bioinformatics - 1/07/1998

10.1093/bioinformatics/14.6.544

Número de citas: 7 (Web of Science) 8 (Scopus)
  • CiteScore: 9,9 (2020)
Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Número de citas: 3 (Web of Science) 4 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 9 (2020)
  • SJR: 4,47 (2004)
  • SNIP: 1,507 (2004)
  • Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)

Biological structure determination by EM is well suited to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/06/2004

10.1007/bf03040957

Número de citas:
  • Cuartil JCR: Q2 (2004)
  • Cuartil SJR: Q2
  • Factor Impacto JCR: 0,854 (2022)
  • CiteScore: 2,1 (2020)
  • SJR: 0,556 (2004)
  • SNIP: 1,19 (2004)
  • Categorías SJR: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)

On the suitability of biological structure determination by electron microscopy to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/03/2005

10.1007/bf03037653

Número de citas: 7 (Web of Science) 6 (Scopus)
  • Cuartil JCR: Q3 (2005)
  • Cuartil SJR: Q2
  • Factor Impacto JCR: 0,5 (2022)
  • Impacto Normalizado por Categoría: 0,442 (2005)
  • CiteScore: 2,1 (2020)
  • SJR: 0,6 (2005)
  • SNIP: 1,719 (2005)
  • Categorías SJR: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... Ver más Contraer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Número de citas: 1 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 9,432 (2009)
  • CiteScore: 16,2 (2020)
  • SJR: 7,025 (2009)
  • SNIP: 2,563 (2009)
  • Impacto JCR a 5 años: 10,312
  • Categorías JCR: MULTIDISCIPLINARY SCIENCES
  • Categorías SJR: Multidisciplinary (Q1)

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... Ver más Contraer

03/2018

10.1101/279398

  • ORCID

iNEXT: a European facility network to stimulate translational structural biology

  • Rolf Boelens
  • Dmitri Svergun
  • Jan Ellenberg
  • Cusack, Stephen
  • Martin A. Walsh
  • Banci, Lucia
  • Harald Schwalbe
  • Perrakis, Anastassis
  • van Leeuwenhoek, Antoni
  • Vladimir Sklenar
  • Jose Maria Carazo Garcia
  • Hartmut Oschkinat
  • Thompson, Andrew
  • Thunnissen, Marjolein
  • Koster, Bram
  • Gordon Leonard
  • Brutscher, Bernhard
  • Stuart, David I.
  • Poul Nissen
  • Wacklin, Hanna
  • Perczel, Andras
  • Margarida Archer
  • Wierenga, Rik
  • Spyroulias, Georgios A.
  • Sussman, Joel
  • iNEXT Consortium
... Ver más Contraer

Febs Letters - 1/06/2018

10.1002/1873-3468.13062

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Última actualización de los datos: 29/06/24 8:36
Próxima recolección programada: 6/07/24 3:00