Carazo García, José María Autor
Towards a data-bank of three-dimensional macromolecular structures: A WWW-based prototype
- CARAZO, JM
- MARABINI, R
- VAQUERIZO, C
- FRANK, J
- Jouffrey, B
- Colliex, C
Electron Microscopy 1994, Vol 1 - 1994
- ORCID
- Web of Science
Transfer function restoration in 3D electron microscopy via iterative data refinement
- Sorzano, COS
- Marabini, R
- Herman, GT
- Censor, Y
- Carazo, JM
Physics in Medicine and Biology - 21/02/2004
10.1088/0031-9155/49/4/003 Ver en origen
- Cuartil JCR: Q2 (2004)
- Cuartil SJR: Q1
- Factor Impacto JCR: 2,368 (2022)
- Impacto Normalizado por Categoría: 0,34 (2004)
- CiteScore: 5,9 (2020)
- SJR: 1,047 (2004)
- SNIP: 1,645 (2004)
- Categorías SJR: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)
- ORCID
- Web of Science
- Scopus
Two-step demodulation based on the Gram-Schmidt orthonormalization method
- Vargas, J.
- Antonio Quiroga, J.
- Sorzano, C. O. S.
- Estrada, J. C.
- Carazo, J. M.
OPTICS LETTERS - 1/02/2012
10.1364/ol.37.000443 Ver en origen
- Cuartil SJR: Q1
- Factor Impacto JCR: 3,385 (2012)
- CiteScore: 7 (2020)
- SJR: 2,577 (2012)
- SNIP: 1,902 (2012)
- Impacto JCR a 5 años: 3,3
- Categorías JCR: OPTICS
- Categorías SJR: Atomic and Molecular Physics, and Optics (Q1)
- ORCID
- Scopus
- Web of Science
Two-step interferometry by a regularized optical flow algorithm
- Vargas, J.
- Antonio Quiroga, J.
- Sorzano, C. O. S.
- Estrada, J. C.
- Carazo, J. M.
OPTICS LETTERS - 1/09/2011
10.1364/ol.36.003485 Ver en origen
- Cuartil SJR: Q1
- Factor Impacto JCR: 3,399 (2011)
- CiteScore: 7 (2020)
- SJR: 2,519 (2011)
- SNIP: 2,435 (2011)
- Impacto JCR a 5 años: 3,387
- Categorías JCR: OPTICS
- Categorías SJR: Atomic and Molecular Physics, and Optics (Q1)
- ORCID
- Web of Science
- Scopus
Umbrella Data Management Plans to Integrate FAIR Data : Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
- David R.
- Richard A.S.
- Connellan C.
- Lauer K.B.
- Chiusano M.L.
- Goble C.
- Houde M.
- Kemmer I.
- Keppler A.
- Lieutaud P.
- Ohmann C.
- Panagiotopoulou M.
- Khan S.R.
- Rybina A.
- Soiland-Reyes S.
- Wit C.
- Wittner R.
- Buono R.A.
- Marsh S.A.
- Audergon P.
- Bonfils D.
- Carazo J.M.
- Charrel R.
- Coppens F.
- Fecke W.
- Filippone C.
- Alvarez E.G.
- Gul S.
- Hermjakob H.
- Herzog K.
- Holub P.
- Kozera L.
- Lister A.L.
- López-Coronado J.
- Madon B.
- Majcen K.
- Martin W.
- Müller W.
- Papadopoulou E.
- Prat C.M.A.
- Romano P.
- Sansone S.A.
- Saunders G.
- Blomberg N.
- Ewbank J.
Data Science Journal - 1/1/2023
- Scopus
- ORCID
Using neighborhood cohesiveness to infer interactions between protein domains
- Segura, Joan
- Sorzano, C. O. S.
- Cuenca-Alba, Jesus
- Aloy, Patrick
- Carazo, J. M.
Bioinformatics - 1/08/2015
10.1093/bioinformatics/btv188 Ver en origen
- Cuartil SJR: Q1
- Factor Impacto JCR: 5,766 (2015)
- CiteScore: 9,9 (2020)
- SJR: 4,97 (2015)
- SNIP: 2,178 (2015)
- Impacto JCR a 5 años: 7,685
- Categorías JCR: BIOCHEMICAL RESEARCH METHODS
- Categorías SJR: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- ORCID
- Scopus
- Web of Science
Using Scipion for stream image processing at Cryo-EM facilities
- Gómez-Blanco J.
- de la Rosa-Trevín J.
- Marabini R.
- del Cano L.
- Jiménez A.
- Martínez M.
- Melero R.
- Majtner T.
- Maluenda D.
- Mota J.
- Rancel Y.
- Ramírez-Aportela E.
- Vilas J.
- Carroni M.
- Fleischmann S.
- Lindahl E.
- Ashton A.
- Basham M.
- Clare D.
- Savage K.
- Siebert C.
- Sharov G.
- Sorzano C.
- Conesa P.
- Carazo J.
JOURNAL OF STRUCTURAL BIOLOGY - 1/12/2018
- Cuartil SJR: Q1
- Factor Impacto JCR: 3,754 (2018)
- CiteScore: 5,5 (2020)
- SJR: 5,254 (2018)
- SNIP: 1,207 (2018)
- Impacto JCR a 5 años: 3,522
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Categorías SJR: Structural Biology (Q1)
- ORCID
- Scopus
- Web of Science
Validation of electron microscopy initial models via small angle X-ray scattering curves
- Jiménez A.
- Jonic S.
- Majtner T.
- Otón J.
- Vilas J.
- Maluenda D.
- Mota J.
- Ramírez-Aportela E.
- Martínez M.
- Rancel Y.
- Segura J.
- Sánchez-García R.
- Melero R.
- Del Cano L.
- Conesa P.
- Skjaerven L.
- Marabini R.
- Carazo J.
- Sorzano C.
Bioinformatics - 15/07/2019
- Cuartil SJR: Q1
- Factor Impacto JCR: 5,61 (2019)
- CiteScore: 9,9 (2020)
- SJR: 3,567 (2019)
- SNIP: 1,864 (2019)
- Impacto JCR a 5 años: 9,853
- Categorías JCR: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- Categorías SJR: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- Scopus
- ORCID
- Web of Science
Variations of the three-dimensional structure of the Escherichia coli ribosome in the range of overlap views. An application of the methods of multicone and local single-cone three-dimensional reconstruction.
- CARAZO, JM
- WAGENKNECHT, T
- FRANK, J
Biophysical Journal - 1/03/1989
- CiteScore: 6,3 (2020)
- Scopus
- ORCID
- Web of Science
Volumetric constraints in 3D tomography applied to electron microscopy
- Marabini R.
- Herman G.
- Sorzano C.
- Carazo J.
2002 Ieee International Symposium on Biomedical Imaging, Proceedings - 1/1/2002
10.1109/isbi.2002.1029339 Ver en origen
- ORCID
- Scopus
- Web of Science
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 Ver en origen
- CiteScore: 1,8 (2020)
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- Factor Impacto JCR: 1,626 (2010)
- CiteScore: 2,6 (2020)
- SJR: 1,408 (2010)
- SNIP: 0,493 (2010)
- Impacto JCR a 5 años: 2,185
- Categorías JCR: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- Cuartil JCR: Q2 (2021)
- Impacto Normalizado por Categoría: 0,595 (2021)
- CiteScore: 2,2 (2020)
- SJR: 0,711 (2020)
- SNIP: 0,57 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,312 (2014)
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
10.1117/12.185208 Ver en origen
- CiteScore: 0,8 (2020)
- ORCID
- Scopus
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- Cuartil SJR: Q3
- CiteScore: 2,2 (2020)
- SJR: 0,751 (2013)
- SNIP: 0,362 (2013)
- Categorías SJR: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,156 (2014)
- CiteScore: 0,8 (2020)
- ORCID
- Scopus
- Web of Science
3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.
- Carazo J.
ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988
- CiteScore: 4,6 (2020)
3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING
- Carmen San Martín
- STAMFORD, NPJ
- DAMMEROVA, N
- DIXON, NE
- Jose Maria Carazo Garcia
Electron Microscopy 1994, Vols 3a and 3b - 1994
- ORCID
3D reconstruction of macromolecules on multiprocessors
- Ujaldón M.
- Asenjo R.
- Zapata E.L.
- Cabaleiro J.C.
- Carazo J.M.
Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994
- Scopus
- ORCID
A method for refining the geometry of images collected by the random conical tilt scheme based on common lines
- de la Fraga, LG
- Herman, GT
- Jose Maria Carazo Garcia
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
Analysing cryoEM data quality in the post resolution revolution era: Validity criteria
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
A new image translational alignment method with an application in electron crystallography
- Roca, R
- Danielsson, PE
- Jose Maria Carazo Garcia
- Jose-Jesus Fernandez
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 Ver en origen
- Categorías SJR: Computer Vision and Pattern Recognition
- ORCID
- Scopus
- Web of Science
A semantic mediation approach for problems in computational molecular biology
Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003
- Categorías SJR: Transportation
- ORCID
- Scopus
AutoRes: Structure resolution determination through autocorrelation analysis
- J. Vargas
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
3dem Gordon Research Conference 2015 - 2015
- ORCID
BioImage, the data base of volume images: Update on the first prototype
- Jose Maria Carazo Garcia
- Monica Chagoyen
- Lucini, JL
- Stelzer, E
- Lindek, S
- Fritsch, R
- Engel, A
- Heyman, JB
- Fita, I
- Susana G Kalko
- Henn, C
- Pittet, JJ
- McNeil, P
- Rodriquez-Tome, P
- Shotton, D
- Boudier, T
- Machtynger, J
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
Este autor no tiene patentes.
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- Cuartil SJR: Q1
- CiteScore: 9 (2020)
- SJR: 4,47 (2004)
- SNIP: 1,507 (2004)
- Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)
- Web of Science
- Scopus
- ORCID
Automatic local resolution-based sharpening of cryo-EM maps.
- Ramirez-Aportela E
- Vilas JL
- Melero R
- Conesa P
- Martinez M
- Maluenda D
- Mota J
- Jimenez A
- Vargas J
- Marabini R
- Carazo JM
- Sorzano COS
10/2018
- ORCID
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- Cuartil JCR: Q2 (2004)
- Cuartil SJR: Q2
- Factor Impacto JCR: 0,854 (2022)
- CiteScore: 2,1 (2020)
- SJR: 0,556 (2004)
- SNIP: 1,19 (2004)
- Categorías SJR: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Web of Science
- ORCID
- Scopus
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M
- Sorzano COS
- Des Georges A
- Carazo JM
- Vargas J
08/2018
- ORCID
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- Factor Impacto JCR: 4,799 (2021)
- CiteScore: 5,8 (2020)
- SJR: 0,859 (2020)
- SNIP: 0,995 (2020)
- Impacto JCR a 5 años: 3,907
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- ORCID
- Scopus
- Web of Science
Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009
- Cuartil SJR: Q1
- Factor Impacto JCR: 9,432 (2009)
- CiteScore: 16,2 (2020)
- SJR: 7,025 (2009)
- SNIP: 2,563 (2009)
- Impacto JCR a 5 años: 10,312
- Categorías JCR: MULTIDISCIPLINARY SCIENCES
- Categorías SJR: Multidisciplinary (Q1)
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- Factor Impacto JCR: 3,4 (2022)
- Impacto JCR a 5 años: 3,4
- Categorías JCR: CHEMISTRY, PHYSICAL
Índice h
Scopus: 52
Web of Science: 54
Índice i10
Scopus: 178
Web of Science: 192
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Proyectos de investigación en la UAL
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Acrónimo 99109Desde: 2 de junio de 1999Hasta: 2 de junio de 2000Financiado por: Ministerio de Asuntos ExterioresImporte de financiación: 19.232,39 EURRol: Investigador