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Carazo García, José María Author

Open Access

Dynamic Effects of Cofactors and DNA on the Oligomeric State of Human Mitochondrial DNA Helicase

  • Ziebarth, Tawn D.
  • Gonzalez-Soltero, Rocio
  • Makowska-Grzyska, Magdalena M.
  • Nunez-Ramirez, Rafael
  • Carazo, Jose-Maria
  • Kaguni, Laurie S.

JOURNAL OF BIOLOGICAL CHEMISTRY - 7/05/2010

10.1074/jbc.m109.099663

Cite count: 26 (Web of Science) 23 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.328 (2010)
  • CiteScore: 7.7 (2020)
  • SJR: 3.998 (2010
  • SNIP: 1.337 (2010
  • JCR 5-year Impact Factor: 5.498
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
  • SJR Categories: Biochemistry (Q1); Cell Biology (Q1); Molecular Biology (Q1)

Dynamic kinetochore size regulation promotes microtubule capture and chromosome biorientation in mitosis

  • Sacristan, Carlos
  • Ahmad, Misbha Ud Din
  • Keller, Jenny
  • Fermie, Job
  • Groenewold, Vincent
  • Tromer, Eelco
  • Fish, Alexander
  • Melero, Roberto
  • Carazo, Jose Maria
  • Klumperman, Judith
  • Musacchio, Andrea
  • Perrakis, Anastassis
  • Kops, Geert J. P. L.
... View more Collapse

NATURE CELL BIOLOGY - 1/07/2018

10.1038/s41556-018-0130-3

Cite count: 63 (Web of Science) 34 (Scopus)
  • JCR Quartile: Q2 (2018)
  • SJR Quartile: Q1
  • JCR Impact Factor: 17.728 (2022)
  • Category normalized Impact: 1.865 (2018)
  • CiteScore: 31.5 (2020)
  • SJR: 12.137 (2018
  • SNIP: 3.322 (2018
  • JCR 5-year Impact Factor: 20.551
  • JCR Categories: CELL BIOLOGY
  • SJR Categories: Cell Biology (Q1)

Effects of uneven sampling in 3D reconstructions.

  • Sorzano, COS
  • Marabini, R
  • Carazo, JM
  • Rietzel, E
  • Schroeder, R
  • Herman, GT
  • Boisset, N
  • Benavides, HAC
  • Yacaman, MJ
... View more Collapse

Electron Microscopy 1998, Vol 1 - 1998

Efficient initial volume determination from electron microscopy images of single particles

  • Vargas, Javier
  • Alvarez-Cabrera, Ana-Lucia
  • Marabini, Roberto
  • Carazo, Jose M.
  • Sorzano, C. O. S.

BIOINFORMATICS - 15/10/2014

10.1093/bioinformatics/btu404 View source

Cite count: 52 (Web of Science) 46 (Scopus)
  • JCR Quartile: Q2 (2014)
  • SJR Quartile: Q1
  • JCR Impact Factor: 4.981 (2014)
  • Category normalized Impact: 1.633 (2014)
  • CiteScore: 9.9 (2020)
  • SJR: 4.171 (2014
  • SNIP: 1.834 (2014
  • JCR 5-year Impact Factor: 8.136
  • JCR Categories: MATHEMATICAL & COMPUTATIONAL BIOLOGY
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)

Electron microscopy structural insights into CPAP oligomeric behavior: A plausible assembly process of a supramolecular scaffold of the centrosome

  • Alvarez-Cabrera, Ana L.
  • Delgado, Sandra
  • Gil-Carton, David
  • Mortuza, Gulnahar B.
  • Montoya, Guillermo
  • Sorzano, Carlos O. S.
  • Tang, Tang K.
  • Carazo, Jose M.
... View more Collapse

Frontiers in Molecular Biosciences - 27/03/2017

10.3389/fmolb.2017.00017 View source

Cite count: 4 (Web of Science) 4 (Scopus)
  • JCR Quartile: Q2 (2017)
  • SJR Quartile: Q1
  • Category normalized Impact: 0.159 (2017)
  • SJR Categories: Biochemistry (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Molecular Biology (Q2)
Open Access

Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA

  • Melero, Roberto
  • Rajagopalan, Sridharan
  • Lazaro, Melisa
  • Joerger, Andreas C.
  • Brandt, Tobias
  • Veprintsev, Dmitry B.
  • Lasso, Gorka
  • Gil, David
  • Scheres, Sjors H. W.
  • Maria Carazo, Jose
  • Fersht, Alan R.
  • Valle, Mikel
... View more Collapse

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 11/01/2011

10.1073/pnas.1015520107

Cite count: 62 (Web of Science) 68 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 9.681 (2011)
  • CiteScore: 16.2 (2020)
  • SJR: 6.864 (2011
  • SNIP: 2.642 (2011
  • JCR 5-year Impact Factor: 10.472
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)

Electron microscopy study of GroEL chaperonin: Different views of the aggregate appear as a function of cell growth temperature

  • CARAZO, JM
  • MARCO, S
  • ABELLA, G
  • CARRASCOSA, JL
  • SECILLA, JP
  • MUYAL, M

Journal of Structural Biology - 06/1991

10.1016/1047-8477(91)90071-4

Cite count: 21 (Web of Science)

Electron tomography of complex biological specimens on the Grid

  • Fernández J.
  • García I.
  • Carazo J.
  • Marabini R.

Future Generation Computer Systems - 1/03/2007

10.1016/j.future.2006.07.010

Cite count: 11 (Web of Science) 11 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 6.125 (2022)
  • Category normalized Impact: 0.496 (2007)
  • CiteScore: 13.3 (2020)
  • SJR: 0.721 (2007
  • SNIP: 1.508 (2007
  • SJR Categories: Computer Networks and Communications (Q1); Hardware and Architecture (Q1); Software (Q2)

Emerging Themes in CryoEM─Single Particle Analysis Image Processing

  • Vilas J.L.
  • Carazo J.M.
  • Sorzano C.O.S.

CHEMICAL REVIEWS - 14/9/2022

10.1021/acs.chemrev.1c00850

Cite count: 9 (Web of Science)
  • JCR Quartile: Q2 (2022)
  • JCR Impact Factor: 62.1 (2022)
  • Category normalized Impact: 0.526 (2022)
  • CiteScore: 98.8 (2021)
  • SJR: 18.718 (2021
  • SNIP: 12.313 (2021
  • JCR 5-year Impact Factor: 66.5
  • JCR Categories: CHEMISTRY, MULTIDISCIPLINARY

Engene: The processing and exploratory analysis of gene expression data

  • García de la Nava J.
  • Santaella D.
  • Cuenca Alba J.
  • Carazo J.
  • Trelles O.
  • Pascual-Montano A.

Bioinformatics - 22/03/2003

10.1093/bioinformatics/btg028

Cite count: 31 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 9.9 (2020)
  • SJR: 3.248 (2003
  • SNIP: 2.321 (2003
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... View more Collapse

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 View source

Cite count: 1 (Web of Science) 1 (Scopus)
  • CiteScore: 1.8 (2020)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 67 (Web of Science) 52 (Scopus)
  • JCR Impact Factor: 1.626 (2010)
  • CiteScore: 2.6 (2020)
  • SJR: 1.408 (2010
  • SNIP: 0.493 (2010
  • JCR 5-year Impact Factor: 2.185
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... View more Collapse

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Cite count: 5 (Web of Science) 1 (Scopus)
  • JCR Quartile: Q2 (2021)
  • Category normalized Impact: 0.595 (2021)
  • CiteScore: 2.2 (2020)
  • SJR: 0.711 (2020
  • SNIP: 0.57 (2020

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... View more Collapse

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Cite count: 9 (Web of Science) 4 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.312 (2014)
  • CiteScore: 0.8 (2020)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... View more Collapse

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... View more Collapse

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 View source

Cite count: 1 (Web of Science) 4 (Scopus)
  • CiteScore: 0.8 (2020)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... View more Collapse

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)
  • SJR Quartile: Q3
  • CiteScore: 2.2 (2020)
  • SJR: 0.751 (2013
  • SNIP: 0.362 (2013
  • SJR Categories: Genetics (Q3); Molecular Biology (Q3)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Cite count: 4 (Web of Science) 3 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.156 (2014)
  • CiteScore: 0.8 (2020)

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Cite count:
  • CiteScore: 4.6 (2020)

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

Electron Microscopy 1994, Vols 3a and 3b - 1994

  • ORCID

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Cite count:

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Analysing cryoEM data quality in the post resolution revolution era: Validity criteria

  • Jose Maria Carazo Garcia

European Biophysics Journal With Biophysics Letters - 07/2019

  • ORCID

A new image translational alignment method with an application in electron crystallography

  • Roca, R
  • Danielsson, PE
  • Jose Maria Carazo Garcia
  • Jose-Jesus Fernandez

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
... View more Collapse

2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014

10.1109/icip.2014.7025420 View source

Cite count:
  • SJR Categories: Computer Vision and Pattern Recognition

A semantic mediation approach for problems in computational molecular biology

  • Chagoyen M.
  • Kurul M.
  • De-Alarcon P.
  • Santini S.
  • Ludäscher B.
  • Carazo J.
  • Gupta A.
... View more Collapse

Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003

10.1109/csb.2003.1227339

Cite count:
  • SJR Categories: Transportation

AutoRes: Structure resolution determination through autocorrelation analysis

  • J. Vargas
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia

3dem Gordon Research Conference 2015 - 2015

  • ORCID

BioImage, the data base of volume images: Update on the first prototype

  • Jose Maria Carazo Garcia
  • Monica Chagoyen
  • Lucini, JL
  • Stelzer, E
  • Lindek, S
  • Fritsch, R
  • Engel, A
  • Heyman, JB
  • Fita, I
  • Susana G Kalko
  • Henn, C
  • Pittet, JJ
  • McNeil, P
  • Rodriquez-Tome, P
  • Shotton, D
  • Boudier, T
  • Machtynger, J
... View more Collapse

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

This author has no patents.

Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Cite count: 3 (Web of Science) 4 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 9 (2020)
  • SJR: 4.47 (2004
  • SNIP: 1.507 (2004
  • SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Cite count: 62 (Scopus)
  • CiteScore: 5 (2020)

Biological structure determination by EM is well suited to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/06/2004

10.1007/bf03040957

Cite count:
  • JCR Quartile: Q2 (2004)
  • SJR Quartile: Q2
  • JCR Impact Factor: 0.854 (2022)
  • CiteScore: 2.1 (2020)
  • SJR: 0.556 (2004
  • SNIP: 1.19 (2004
  • SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... View more Collapse

03/2018

10.1101/279398

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID
Open Access

ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Georges A.d.
  • Abrishami V.
  • Vargas J.

Progress In Biophysics & Molecular Biology - 1/09/2021

10.1016/j.pbiomolbio.2021.01.001

Cite count: 2 (Web of Science) 1 (Scopus)
  • JCR Impact Factor: 4.799 (2021)
  • CiteScore: 5.8 (2020)
  • SJR: 0.859 (2020
  • SNIP: 0.995 (2020
  • JCR 5-year Impact Factor: 3.907
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... View more Collapse

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Cite count: 1 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 9.432 (2009)
  • CiteScore: 16.2 (2020)
  • SJR: 7.025 (2009
  • SNIP: 2.563 (2009
  • JCR 5-year Impact Factor: 10.312
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Multidisciplinary (Q1)

Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)

  • Sorzano C.O.S.
  • Vilas J.L.
  • Ramírez-Aportela E.
  • Krieger J.
  • Del Hoyo D.
  • Herreros D.
  • Fernandez-Giménez E.
  • Marchán D.
  • De Isidro Gómez F.
  • Macías J.R.
  • Sánchez I.
  • Del Caño L.
  • Fonseca-Reyna Y.
  • Conesa P.
  • García-Mena A.
  • Burguet J.
  • García Condado J.
  • Méndez García J.
  • Martínez M.
  • Muñoz-Barrutia A.
  • Marabini R.
  • Vargas J.
  • Carazo J.M.
... View more Collapse

FARADAY DISCUSSIONS - 11/11/2022

10.1039/d2fd90074b

Cite count:
  • JCR Impact Factor: 3.4 (2022)
  • JCR 5-year Impact Factor: 3.4
  • JCR Categories: CHEMISTRY, PHYSICAL

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Last data update: 5/18/24 8:47 AM
Next scheduled update: 5/25/24 3:00 AM