Carazo García, José María Autor

3DBIONOTES: A unified, enriched and interactive view of macromolecular information

  • Tabas-Madrid, D.
  • Segura, J.
  • Sanchez-Garcia, R.
  • Cuenca-Alba, J.
  • Sorzano, C. O. S.
  • Carazo, J. M.

Journal of Structural Biology - 1/05/2016

10.1016/j.jsb.2016.02.007 Ver en origen

Número de citas: 6 (Web of Science) 6 (Scopus)

3DBionotes COVID-19 Edition.

  • Macias JR
  • Sanchez-Garcia R
  • Conesa P
  • Ramirez-Aportela E
  • Martinez Gonzalez M
  • Wert-Carvajal C
  • Parra-Perez AM
  • Segura Mora J
  • Horrell S
  • Thorn A
  • Carazo JM
... Ver más Contraer

Bioinformatics (Oxford, England) - 15/05/2021

10.1093/bioinformatics/btab397

Número de citas: 1 (Web of Science)

3DBIONOTES v2.0: A web server for the automatic annotation of macromolecular structures

  • Segura, Joan
  • Sanchez-Garcia, Ruben
  • Martinez, Marta
  • Cuenca-Alba, Jesus
  • Tabas-Madrid, Daniel
  • Sorzano, C. O. S.
  • Carazo, J. M.
... Ver más Contraer

Bioinformatics - 15/11/2017

10.1093/bioinformatics/btx483 Ver en origen

Número de citas: 14 (Web of Science) 16 (Scopus)

3DBIONOTES v3.0: Crossing molecular and structural biology data with genomic variations

  • Segura J.
  • Sanchez-Garcia R.
  • Sorzano C.
  • Carazo J.
  • Valencia A.

Bioinformatics - 15/09/2019

10.1093/bioinformatics/btz118

Número de citas: 9 (Web of Science) 3 (Scopus)
Open Access

3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures

  • Sanchez-Garcia, Ruben
  • Sanchez Sorzano, Carlos Oscar
  • Maria Carazo, Jose
  • Segura, Joan

MOLECULES - 1/12/2017

10.3390/molecules22122230 Ver en origen

Número de citas: 29 (Web of Science) 15 (Scopus)
Open Access

3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling

  • Segura, Joan
  • Sanchez-Garcia, Ruben
  • Tabas-Madrid, Daniel
  • Cuenca-Alba, Jesus
  • Sorzano, Carlos Oscar S.
  • Maria Carazo, Jose

Biophysical Journal - 23/02/2016

10.1016/j.bpj.2015.11.3519 Ver en origen

Número de citas: 13 (Web of Science) 11 (Scopus)

3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs)

  • Marabini, R.
  • Herman, G.T.
  • Carazo, J.M.

Ultramicroscopy - 1/04/1998

10.1016/s0304-3991(97)00127-7 Ver en origen

Número de citas: 122 (Web of Science) 132 (Scopus)

3D reconstruction of 2D crystals from projections in real space

  • Marabini, R
  • Herman, GT
  • Sorzano, COS
  • Carazo, JM
  • Fernandez, JJ
  • Matej, S
  • IEEE
... Ver más Contraer

2002 Ieee International Symposium on Biomedical Imaging, Proceedings - 1/1/2002

10.1109/isbi.2002.1029351 Ver en origen

Número de citas: 1 (Scopus)

3-D reconstruction of 2-D crystals in real space

  • Marabini, R
  • Sorzano, COS
  • Matej, S
  • Fernandez, JJ
  • Carazo, JM
  • Herman, GT

IEEE Transactions on Image Processing - 1/04/2004

10.1109/tip.2003.822620 Ver en origen

Número de citas: 16 (Web of Science) 16 (Scopus)

A clustering approach to multireference alignment of single-particle projections in electron microscopy

  • Sorzano, C. O. S.
  • Bilbao-Castro, J. R.
  • Shkolnisky, Y.
  • Alcorlo, M.
  • Melero, R.
  • Caffarena-Fernandez, G.
  • Li, M.
  • Xu, G.
  • Marabini, R.
  • Carazo, J. M.
... Ver más Contraer

JOURNAL OF STRUCTURAL BIOLOGY - 1/08/2010

10.1016/j.jsb.2010.03.011 Ver en origen

Número de citas: 163 (Web of Science) 142 (Scopus)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... Ver más Contraer

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Número de citas: 1 (Web of Science) 1 (Scopus)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 67 (Web of Science) 52 (Scopus)

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 5 (Web of Science) 1 (Scopus)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 9 (Web of Science) 4 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... Ver más Contraer

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... Ver más Contraer

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 Ver en origen

Número de citas: 1 (Web of Science) 4 (Scopus)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Número de citas: 14 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Número de citas:

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

Electron Microscopy 1994, Vols 3a and 3b - 1994

  • ORCID

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Número de citas:

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Analysing cryoEM data quality in the post resolution revolution era: Validity criteria

  • Jose Maria Carazo Garcia

European Biophysics Journal With Biophysics Letters - 07/2019

  • ORCID

A new image translational alignment method with an application in electron crystallography

  • Roca, R
  • Danielsson, PE
  • Jose Maria Carazo Garcia
  • Jose-Jesus Fernandez

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
... Ver más Contraer

2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014

10.1109/icip.2014.7025420 Ver en origen

Número de citas:

A semantic mediation approach for problems in computational molecular biology

  • Chagoyen M.
  • Kurul M.
  • De-Alarcon P.
  • Santini S.
  • Ludäscher B.
  • Carazo J.
  • Gupta A.
... Ver más Contraer

Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003

10.1109/csb.2003.1227339

Número de citas:

AutoRes: Structure resolution determination through autocorrelation analysis

  • J. Vargas
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia

3dem Gordon Research Conference 2015 - 2015

  • ORCID

BioImage, the data base of volume images: Update on the first prototype

  • Jose Maria Carazo Garcia
  • Monica Chagoyen
  • Lucini, JL
  • Stelzer, E
  • Lindek, S
  • Fritsch, R
  • Engel, A
  • Heyman, JB
  • Fita, I
  • Susana G Kalko
  • Henn, C
  • Pittet, JJ
  • McNeil, P
  • Rodriquez-Tome, P
  • Shotton, D
  • Boudier, T
  • Machtynger, J
... Ver más Contraer

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Este autor no tiene patentes.

Open Access

Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)

  • Ginex T.
  • Marco-Marín C.
  • Wieczór M.
  • Mata C.
  • Krieger J.
  • Ruiz-Rodriguez P.
  • López-Redondo M.L.
  • Francés-Gómez C.
  • Melero R.
  • Sánchez-Sorzano C.Ó.
  • Martínez M.
  • Gougeard N.
  • Forcada-Nadal A.
  • Zamora-Caballero S.
  • Gozalbo-Rovira R.
  • Sanz-Frasquet C.
  • Arranz R.
  • Bravo J.
  • Rubio V.
  • Marina A.
  • Geller R.
  • Comas I.
  • Gil C.
  • Coscolla M.
  • Orozco M.
  • Llácer J.L.
  • Carazo J.M.
... Ver más Contraer

PLoS Pathogens - 1/11/2022

10.1371/journal.ppat.1010995

Número de citas:

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

05/2020

10.1101/2020.05.12.069831

  • ORCID

Improvements on marker-free images alignment for electron tomography

  • C.O.S. Sorzano
  • F. de Isidro-Gómez
  • E. Fernández-Giménez
  • D. Herreros
  • S. Marco
  • J.M. Carazo
  • C. Messaoudi
... Ver más Contraer

Journal of Structural Biology: X - 24/05/2020

10.1101/2020.05.22.110445

Número de citas: 8 (Web of Science)

iNEXT: a European facility network to stimulate translational structural biology

  • Rolf Boelens
  • Dmitri Svergun
  • Jan Ellenberg
  • Cusack, Stephen
  • Martin A. Walsh
  • Banci, Lucia
  • Harald Schwalbe
  • Perrakis, Anastassis
  • van Leeuwenhoek, Antoni
  • Vladimir Sklenar
  • Jose Maria Carazo Garcia
  • Hartmut Oschkinat
  • Thompson, Andrew
  • Thunnissen, Marjolein
  • Koster, Bram
  • Gordon Leonard
  • Brutscher, Bernhard
  • Stuart, David I.
  • Poul Nissen
  • Wacklin, Hanna
  • Perczel, Andras
  • Margarida Archer
  • Wierenga, Rik
  • Spyroulias, Georgios A.
  • Sussman, Joel
  • iNEXT Consortium
... Ver más Contraer

Febs Letters - 06/2018

10.1002/1873-3468.13062

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v1

  • ORCID

New phylogenetic venues opened by a novel implementation of the DNAml algorithm

  • Trelles, O
  • Ceron, C
  • Wang, HC
  • Dopazo, J
  • Carazo, JM

Bioinformatics - 1/07/1998

10.1093/bioinformatics/14.6.544

Número de citas: 7 (Web of Science) 8 (Scopus)

On the suitability of biological structure determination by electron microscopy to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/03/2005

10.1007/bf03037653

Número de citas: 7 (Web of Science) 6 (Scopus)

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

  • James Michael Krieger
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo

International Journal of Molecular Sciences - 10/08/2023

10.3390/ijms241814245

Número de citas: 2 (Web of Science) 2 (Scopus)
Open Access

The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation

  • Tiziana Ginex
  • Clara Marco-Marín
  • Miłosz Wieczór
  • Carlos P. Mata
  • James Krieger
  • Maria Luisa López-Redondo
  • Clara Francés-Gómez
  • Paula Ruiz-Rodriguez
  • Roberto Melero
  • Carlos Óscar Sánchez-Sorzano
  • Marta Martínez
  • Nadine Gougeard
  • Alicia Forcada-Nadal
  • Sara Zamora-Caballero
  • Roberto Gozalbo-Rovira
  • Carla Sanz-Frasquet
  • Jeronimo Bravo
  • Vicente Rubio
  • Alberto Marina
  • Ron Geller
  • Iñaki Comas
  • Carmen Gil
  • Mireia Coscolla
  • Modesto Orozco
  • José Luis Llácer
  • José-Maria Carazo
... Ver más Contraer

PLoS Pathogens - 7/12/2021

10.1371/journal.ppat.1010631

Número de citas: 8 (Web of Science)

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Última actualización de los datos: 27/04/24 8:34
Próxima recolección programada: 4/05/24 3:00