Carazo García, José María Autor

Measuring local-directional resolution and local anisotropy in cryo-EM maps

  • Jose Luis Vilas
  • Hemant D. Tagare
  • Javier Vargas
  • Jose Maria Carazo
  • Carlos Oscar S. Sorzano

Nature Communications - 1/12/2020

10.1038/s41467-019-13742-w

Número de citas: 20 (Web of Science) 13 (Scopus)

Automatic local resolution-based sharpening of cryo-EM maps

  • Ramírez-Aportela E.
  • Vilas J.
  • Glukhova A.
  • Melero R.
  • Conesa P.
  • Martínez M.
  • Maluenda D.
  • Mota J.
  • Jiménez A.
  • Vargas J.
  • Marabini R.
  • Sexton P.
  • Carazo J.
  • Sorzano C.
... Ver más Contraer

BIOINFORMATICS - 1/2/2020

10.1093/bioinformatics/btz671

Número de citas: 76 (Web of Science) 36 (Scopus)
Open Access

Ribosome-associated vesicles: A dynamic subcompartment of the endoplasmic reticulum in secretory cells

  • Carter S.D.
  • Hampton C.M.
  • Langlois R.
  • Melero R.
  • Farino Z.J.
  • Calderon M.J.
  • Li W.
  • Wallace C.T.
  • Tran N.H.
  • Grassucci R.A.
  • Siegmund S.E.
  • Pemberton J.
  • Morgenstern T.J.
  • Eisenman L.
  • Aguilar J.I.
  • Greenberg N.L.
  • Levy E.S.
  • Yi E.
  • Mitchell W.G.
  • Rice W.J.
  • Wigge C.
  • Pilli J.
  • George E.W.
  • Aslanoglou D.
  • Courel M.
  • Freyberg R.J.
  • Javitch J.A.
  • Wills Z.P.
  • Area-Gomez E.
  • Shiva S.
  • Bartolini F.
  • Volchuk A.
  • Murray S.A.
  • Aridor M.
  • Fish K.N.
  • Walter P.
  • Balla T.
  • Fass D.
  • Wolf S.G.
  • Watkins S.C.
  • Carazo J.M.
  • Jensen G.J.
  • Frank J.
  • Freyberg Z.
... Ver más Contraer

Science Advances - 1/4/2020

10.1126/sciadv.aay9572

Número de citas: 30 (Web of Science) 11 (Scopus)

Integration of Cryo-EM Model Building Software in Scipion

  • Martínez M.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Melero R.
  • Cuervo A.
  • Conesa P.
  • Del Caño L.
  • Fonseca Y.C.
  • Sánchez-García R.
  • Strelak D.
  • Conesa J.J.
  • Fernández-Giménez E.
  • de Isidro F.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Marabini R.
... Ver más Contraer

Journal of Chemical Information and Modeling - 26/5/2020

10.1021/acs.jcim.9b01032

Número de citas: 16 (Web of Science) 8 (Scopus)

Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules.

  • Lapenta F.
  • Aupič J.
  • Vezzoli M.
  • Strmšek Ž.
  • Da Vela S.
  • Svergun D.I.
  • Carazo J.M.
  • Melero R.
  • Jerala R.
... Ver más Contraer

Nature communications - 1/03/2021

10.1038/s41467-021-21969-9

Número de citas:

3DBionotes COVID-19 Edition.

  • Macias JR
  • Sanchez-Garcia R
  • Conesa P
  • Ramirez-Aportela E
  • Martinez Gonzalez M
  • Wert-Carvajal C
  • Parra-Perez AM
  • Segura Mora J
  • Horrell S
  • Thorn A
  • Carazo JM
... Ver más Contraer

Bioinformatics (Oxford, England) - 15/05/2021

10.1093/bioinformatics/btab397

Número de citas: 1 (Web of Science)

Principal component analysis is limited to low-resolution analysis in cryoEM

  • Sorzano C.O.S.
  • Carazo J.M.

Acta Crystallographica Section D Structural Biology - 1/06/2021

10.1107/s2059798321002291

Número de citas: 8 (Web of Science) 3 (Scopus)

Advances in xmipp for cryo–electron microscopy: From xmipp to scipion

  • Strelak D.
  • Jiménez-Moreno A.
  • Vilas J.L.
  • Ramírez-Aportela E.
  • Sánchez-García R.
  • Maluenda D.
  • Vargas J.
  • Herreros D.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.P.
  • Horacek J.
  • Myska D.
  • Horacek M.
  • Conesa P.
  • Fonseca-Reyna Y.C.
  • Jiménez J.
  • Martínez M.
  • Harastani M.
  • Jonić S.
  • Filipovic J.
  • Marabini R.
  • Carazo J.M.
  • Sorzano C.O.S.
... Ver más Contraer

MOLECULES - 1/10/2021

10.3390/molecules26206224

Número de citas: 17 (Web of Science)

Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

  • Herreros D.
  • Lederman R.R.
  • Krieger J.
  • Jimenez-Moreno A.
  • Martinez M.
  • Myska D.
  • Strelak D.
  • Filipovic J.
  • Bahar I.
  • Carazo J.M.
  • Sanchez C.O.S.
... Ver más Contraer

IUCrJ - 1/11/2021

10.1107/s2052252521008903

Número de citas: 9 (Web of Science)
Open Access

PDBe-KB: collaboratively defining the biological context of structural data

  • Varadi, Mihaly
  • Anyango, Stephen
  • Armstrong, David
  • Berrisford, John
  • Choudhary, Preeti
  • Deshpande, Mandar
  • Nadzirin, Nurul
  • Nair, Sreenath S.
  • Pravda, Lukas
  • Tanweer, Ahsan
  • Al-Lazikani, Bissan
  • Andreini, Claudia
  • Barton, Geoffrey J.
  • Bednar, David
  • Berka, Karel
  • Blundell, Tom
  • Brock, Kelly P.
  • Maria Carazo, Jose
  • Damborsky, Jiri
  • David, Alessia
  • Dey, Sucharita
  • Dunbrack, Roland
  • Fernandez Recio, Juan
  • Fraternali, Franca
  • Gibson, Toby
  • Helmer-Citterich, Manuela
  • Hoksza, David
  • Hopf, Thomas
  • Jakubec, David
  • Kannan, Natarajan
  • Krivak, Radoslav
  • Kumar, Manjeet
  • Levy, Emmanuel D.
  • London, Nir
  • Macias, Jose Ramon
  • Srivatsan, Madhusudhan M.
  • Marks, Debora S.
  • Martens, Lennart
  • McGowan, Stuart A.
  • McGreig, Jake E.
  • Modi, Vivek
  • Gonzalo Parra, R.
  • Pepe, Gerardo
  • Piovesan, Damiano
  • Prilusky, Jaime
  • Putignano, Valeria
  • Radusky, Leandro G.
  • Ramasamy, Pathmanaban
  • Rausch, Atilio O.
  • Reuter, Nathalie
  • Rodriguez, Luis A.
  • Rollins, Nathan J.
  • Rosato, Antonio
  • Serrano, Luis
  • Singh, Gulzar
  • Skoda, Petr
  • Sorzano, Carlos Oscar S.
  • Stourac, Jan
  • Sulkowska, Joanna, I
  • Svobodova, Radka
  • Tichshenko, Natalia
  • Tosatto, Silvio C. E.
  • Vranken, Wim
  • Wass, Mark N.
  • Xue, Dandan
  • Zaidman, Daniel
  • Thornton, Janet
  • Sternberg, Michael
  • Orengo, Christine
  • Velankar, Sameer
  • PDBe-KB Consortium
... Ver más Contraer

NUCLEIC ACIDS RESEARCH - 10/11/2021

10.1093/nar/gkab988

Número de citas: 36 (Web of Science) 15 (Scopus)
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... Ver más Contraer

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 Ver en origen

Número de citas: 1 (Web of Science) 4 (Scopus)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... Ver más Contraer

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Número de citas: 1 (Web of Science) 1 (Scopus)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 67 (Web of Science) 52 (Scopus)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Número de citas: 14 (Scopus)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 9 (Web of Science) 4 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... Ver más Contraer

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 5 (Web of Science) 1 (Scopus)

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

  • Carazo J.M.
  • Carrascosa J.
  • Santisteban A.

1/12/1985

Número de citas:

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Número de citas:

Parallel architecture for real-time speech recognition in Spanish

  • Alexandres S.
  • Moran J.
  • Carazo J.
  • Santos A.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/12/1990

Número de citas: 2 (Scopus)

Image reconstruction on hypercube computers

  • Zapata E.L.
  • Benavides I.
  • Rivera F.F.
  • Bruguera J.D.
  • Carazo J.M.

1/12/1990

Número de citas: 4 (Scopus)
Open Access

Mapping strategies for sequential sequence comparison algorithms on LAN-based message passing architectures

  • Trelles-Salazar O.
  • Zapata E.L.
  • Carazo J.M.

Lecture Notes In Computer Science - 1/1/1994

10.1007/bfb0020372

Número de citas: 6 (Scopus)

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Número de citas:

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

Electron Microscopy 1994, Vols 3a and 3b - 1994

  • ORCID

Electron tomography of biological specimens

  • Marabini R.
  • Carmen San Martin M.
  • Carazo J.

Studies in Health Technology and Informatics - 1/1/1997

10.3233/978-1-60750-874-8-53

Número de citas: 2 (Scopus)

Biological sequence analysis on distributed-shared memory multiprocessors

  • Rodriguez A.
  • de la Fraga L.G.
  • Zapata E.L.
  • Carazo J.M.
  • Trelles O.

Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998

10.1109/empdp.1998.647174

Número de citas: 1 (Scopus)

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Este autor no tiene patentes.

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Número de citas: 62 (Scopus)

New phylogenetic venues opened by a novel implementation of the DNAml algorithm

  • Trelles, O
  • Ceron, C
  • Wang, HC
  • Dopazo, J
  • Carazo, JM

Bioinformatics - 1/07/1998

10.1093/bioinformatics/14.6.544

Número de citas: 7 (Web of Science) 8 (Scopus)
Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Número de citas: 3 (Web of Science) 4 (Scopus)

Biological structure determination by EM is well suited to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/06/2004

10.1007/bf03040957

Número de citas:

On the suitability of biological structure determination by electron microscopy to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/03/2005

10.1007/bf03037653

Número de citas: 7 (Web of Science) 6 (Scopus)
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... Ver más Contraer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Número de citas: 1 (Scopus)

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... Ver más Contraer

03/2018

10.1101/279398

  • ORCID

iNEXT: a European facility network to stimulate translational structural biology

  • Rolf Boelens
  • Dmitri Svergun
  • Jan Ellenberg
  • Cusack, Stephen
  • Martin A. Walsh
  • Banci, Lucia
  • Harald Schwalbe
  • Perrakis, Anastassis
  • van Leeuwenhoek, Antoni
  • Vladimir Sklenar
  • Jose Maria Carazo Garcia
  • Hartmut Oschkinat
  • Thompson, Andrew
  • Thunnissen, Marjolein
  • Koster, Bram
  • Gordon Leonard
  • Brutscher, Bernhard
  • Stuart, David I.
  • Poul Nissen
  • Wacklin, Hanna
  • Perczel, Andras
  • Margarida Archer
  • Wierenga, Rik
  • Spyroulias, Georgios A.
  • Sussman, Joel
  • iNEXT Consortium
... Ver más Contraer

Febs Letters - 06/2018

10.1002/1873-3468.13062

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Última actualización de los datos: 11/05/24 8:46
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