Carazo García, José María Autor

Open Access

A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy

  • Sorzano C.
  • Vargas J.
  • Otón J.
  • De La Rosa-Trevín J.
  • Vilas J.
  • Kazemi M.
  • Melero R.
  • Del Caño L.
  • Cuenca J.
  • Conesa P.
  • Gómez-Blanco J.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Biomed Research International - 1/1/2017

10.1155/2017/6482567

Número de citas: 24 (Web of Science) 13 (Scopus)
Open Access

Three-dimensional reconstruction of the ribosome from Escherichia coli.

  • WAGENKNECHT, T
  • CARAZO, JM
  • RADERMACHER, M
  • FRANK, J

Biophysical Journal - 1/03/1989

10.1016/s0006-3495(89)82839-5

Número de citas: 36 (Web of Science) 34 (Scopus)
Open Access

3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling

  • Segura, Joan
  • Sanchez-Garcia, Ruben
  • Tabas-Madrid, Daniel
  • Cuenca-Alba, Jesus
  • Sorzano, Carlos Oscar S.
  • Maria Carazo, Jose

Biophysical Journal - 23/02/2016

10.1016/j.bpj.2015.11.3519 Ver en origen

Número de citas: 13 (Web of Science) 11 (Scopus)
Open Access

Variations of the three-dimensional structure of the Escherichia coli ribosome in the range of overlap views. An application of the methods of multicone and local single-cone three-dimensional reconstruction.

  • CARAZO, JM
  • WAGENKNECHT, T
  • FRANK, J

Biophysical Journal - 1/03/1989

10.1016/s0006-3495(89)82840-1

Número de citas: 27 (Web of Science) 25 (Scopus)
Open Access

Pattern recognition and classification of images of biological macromolecules using artificial neural networks

  • Marabini R
  • Carazo JM

Biophysical Journal - 1/06/1994

10.1016/s0006-3495(94)80974-9 Ver en origen

Número de citas: 102 (Web of Science) 96 (Scopus)
Open Access

Modeling shape and topology of low-resolution density maps of biological macromolecules

  • De-Alarcon, PA
  • Pascual-Montano, A
  • Gupta, A
  • Carazo, JM

BIOPHYSICAL JOURNAL - 1/08/2002

10.1016/s0006-3495(02)75196-5

Número de citas: 17 (Web of Science) 18 (Scopus)
Open Access

StructMap: Elastic Distance Analysis of Electron Microscopy Maps for Studying Conformational Changes

  • Sanchez Sorzano, Carlos Oscar
  • Lucia Alvarez-Cabrera, Ana
  • Kazemi, Mohsen
  • Maria Carazo, Jose
  • Jonic, Slavica

BIOPHYSICAL JOURNAL - 26/04/2016

10.1016/j.bpj.2016.03.019 Ver en origen

Número de citas: 21 (Web of Science) 13 (Scopus)
Open Access

BioNMF: A versatile tool for non-negative matrix factorization in biology

  • Pascual-Montano, Alberto
  • Carmona-Saez, Pedro
  • Chagoyen, Monica
  • Tirado, Francisco
  • Carazo, Jose M.
  • Pascual-Marqui, Roberto D.

Bmc Bioinformatics - 28/07/2006

10.1186/1471-2105-7-366

Número de citas: 67 (Web of Science) 66 (Scopus)
Open Access

Assessment of protein set coherence using functional annotations

  • Chagoyen, Monica
  • Carazo, Jose M.
  • Pascual-Montano, Alberto

Bmc Bioinformatics - 20/10/2008

10.1186/1471-2105-9-444

Número de citas: 11 (Web of Science) 10 (Scopus)
Open Access

A literature-based similarity metric for biological processes

  • Chagoyen, Monica
  • Carmona-Saez, Pedro
  • Gil, Concha
  • Carazo, Jose M.
  • Pascual-Montano, Alberto

Bmc Bioinformatics - 26/07/2006

10.1186/1471-2105-7-363

Número de citas: 12 (Web of Science) 12 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 9 (Web of Science) 4 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... Ver más Contraer

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... Ver más Contraer

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Número de citas: 1 (Web of Science) 1 (Scopus)

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 67 (Web of Science) 52 (Scopus)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 5 (Web of Science) 1 (Scopus)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Número de citas: 14 (Scopus)
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... Ver más Contraer

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 Ver en origen

Número de citas: 1 (Web of Science) 4 (Scopus)

Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM

  • Velázquez-Muriel J.
  • Carazo J.

2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005

10.1109/csbw.2005.65

Número de citas:

Two-way clustering of gene expression profiles by sparse matrix factorization

  • Pascual-Montano A.
  • Carmona-Sáez P.
  • Pascual-Marqui R.
  • Tirado F.
  • Carazo J.

2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005

10.1109/csbw.2005.137

Número de citas: 6 (Scopus)

Molecular image registration using mutual information and differential evolution optimization

  • Telenczuk, Bartosz
  • Ledesma-Carbayo, Marta J.
  • Velazquez-Muriel, Javier A.
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
... Ver más Contraer

2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano To Macro - Proceedings - 17/11/2006

Número de citas: 4 (Web of Science) 11 (Scopus)

Flexible image registration for the identification of best fitted protein models in 3D-EM maps

  • Fernandez-de-Manuell, Laura
  • Ledesma-Carbayol, Maria J.
  • Atienza-Herrero, Julian
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
... Ver más Contraer

2008 5th Ieee International Symposium On Biomedical Imaging: From Nano To Macro, Proceedings, Isbi - 10/05/2008

10.1109/isbi.2008.4541163 Ver en origen

Número de citas:

Extraction of biomedical events using case-based reasoning

  • Mariana Neves
  • Jose Maria Carazo Garcia
  • Pascual-Montano, Alberto

2009 Biomedical Natural Language Processing Workshop, Bionlp 2009 - Companion Volume: Shared Task On Event Extraction - 2009

  • ORCID

Modeling shape and topology of 3D images of biological specimens

  • De-Alarcón P.
  • Pascual-Montano A.
  • Gupta A.
  • Carazo J.

2014 22nd International Conference On Pattern Recognition (icpr) - 1/12/2002

Número de citas: 1 (Scopus)

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
... Ver más Contraer

2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014

10.1109/icip.2014.7025420 Ver en origen

Número de citas:

AutoRes: Structure resolution determination through autocorrelation analysis

  • J. Vargas
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia

3dem Gordon Research Conference 2015 - 2015

  • ORCID

Evolutionary genomics of SARS-CoV-2: key for viral success

  • Álvarez-Herrera, M.
  • Jose Maria Carazo Garcia
  • Comas I
  • Coscollà, M.
  • Santiago F. Elena
  • Francés-Gómez, C.
  • Franco, M.L.
  • García Rasines, D.
  • Geller, R.
  • Carmen Gil
  • Fernando Gonzalez-Candelas
  • Hillung, J.
  • José Luis Llácer
  • Marina, A.
  • Marqués, M.C.
  • Naveiro Flores, R.
  • Ríos, D.
  • Rodríguez Santana, S.
  • Paula Ruiz-Rodriguez
  • Carlos Oscar S. Sorzano
  • Ulzurum, E.
  • Vidal, M.
... Ver más Contraer

44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022

  • ORCID

Mesa redonda sobre investigadores y Ciencia Abierta

  • Alonso, F.
  • Emilio Cano
  • María P. Martín
  • Jose Maria Carazo Garcia
  • Jan Thiele

5as Jornadas de Análisis de la Red de Bibliotecas y Archivos del Csic. Bibliotecas y Archivos del Csic Por la Ciencia Abierta: Presente y Futuro - 2019

  • ORCID

Este autor no tiene patentes.

New phylogenetic venues opened by a novel implementation of the DNAml algorithm

  • Trelles, O
  • Ceron, C
  • Wang, HC
  • Dopazo, J
  • Carazo, JM

Bioinformatics - 1/07/1998

10.1093/bioinformatics/14.6.544

Número de citas: 7 (Web of Science) 8 (Scopus)

Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)

  • Sorzano C.O.S.
  • Vilas J.L.
  • Ramírez-Aportela E.
  • Krieger J.
  • Del Hoyo D.
  • Herreros D.
  • Fernandez-Giménez E.
  • Marchán D.
  • De Isidro Gómez F.
  • Macías J.R.
  • Sánchez I.
  • Del Caño L.
  • Fonseca-Reyna Y.
  • Conesa P.
  • García-Mena A.
  • Burguet J.
  • García Condado J.
  • Méndez García J.
  • Martínez M.
  • Muñoz-Barrutia A.
  • Marabini R.
  • Vargas J.
  • Carazo J.M.
... Ver más Contraer

FARADAY DISCUSSIONS - 11/11/2022

10.1039/d2fd90074b

Número de citas:

iNEXT: a European facility network to stimulate translational structural biology

  • Rolf Boelens
  • Dmitri Svergun
  • Jan Ellenberg
  • Cusack, Stephen
  • Martin A. Walsh
  • Banci, Lucia
  • Harald Schwalbe
  • Perrakis, Anastassis
  • van Leeuwenhoek, Antoni
  • Vladimir Sklenar
  • Jose Maria Carazo Garcia
  • Hartmut Oschkinat
  • Thompson, Andrew
  • Thunnissen, Marjolein
  • Koster, Bram
  • Gordon Leonard
  • Brutscher, Bernhard
  • Stuart, David I.
  • Poul Nissen
  • Wacklin, Hanna
  • Perczel, Andras
  • Margarida Archer
  • Wierenga, Rik
  • Spyroulias, Georgios A.
  • Sussman, Joel
  • iNEXT Consortium
... Ver más Contraer

Febs Letters - 06/2018

10.1002/1873-3468.13062

  • ORCID

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

  • James Michael Krieger
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo

International Journal of Molecular Sciences - 10/08/2023

10.3390/ijms241814245

Número de citas: 2 (Web of Science) 2 (Scopus)

Improvements on marker-free images alignment for electron tomography

  • C.O.S. Sorzano
  • F. de Isidro-Gómez
  • E. Fernández-Giménez
  • D. Herreros
  • S. Marco
  • J.M. Carazo
  • C. Messaoudi
... Ver más Contraer

Journal of Structural Biology: X - 24/05/2020

10.1101/2020.05.22.110445

Número de citas: 8 (Web of Science)

On the suitability of biological structure determination by electron microscopy to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/03/2005

10.1007/bf03037653

Número de citas: 7 (Web of Science) 6 (Scopus)

Biological structure determination by EM is well suited to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/06/2004

10.1007/bf03040957

Número de citas:
Open Access

Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)

  • Ginex T.
  • Marco-Marín C.
  • Wieczór M.
  • Mata C.
  • Krieger J.
  • Ruiz-Rodriguez P.
  • López-Redondo M.L.
  • Francés-Gómez C.
  • Melero R.
  • Sánchez-Sorzano C.Ó.
  • Martínez M.
  • Gougeard N.
  • Forcada-Nadal A.
  • Zamora-Caballero S.
  • Gozalbo-Rovira R.
  • Sanz-Frasquet C.
  • Arranz R.
  • Bravo J.
  • Rubio V.
  • Marina A.
  • Geller R.
  • Comas I.
  • Gil C.
  • Coscolla M.
  • Orozco M.
  • Llácer J.L.
  • Carazo J.M.
... Ver más Contraer

PLoS Pathogens - 1/11/2022

10.1371/journal.ppat.1010995

Número de citas:
Open Access

The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation

  • Tiziana Ginex
  • Clara Marco-Marín
  • Miłosz Wieczór
  • Carlos P. Mata
  • James Krieger
  • Maria Luisa López-Redondo
  • Clara Francés-Gómez
  • Paula Ruiz-Rodriguez
  • Roberto Melero
  • Carlos Óscar Sánchez-Sorzano
  • Marta Martínez
  • Nadine Gougeard
  • Alicia Forcada-Nadal
  • Sara Zamora-Caballero
  • Roberto Gozalbo-Rovira
  • Carla Sanz-Frasquet
  • Jeronimo Bravo
  • Vicente Rubio
  • Alberto Marina
  • Ron Geller
  • Iñaki Comas
  • Carmen Gil
  • Mireia Coscolla
  • Modesto Orozco
  • José Luis Llácer
  • José-Maria Carazo
... Ver más Contraer

PLoS Pathogens - 7/12/2021

10.1371/journal.ppat.1010631

Número de citas: 8 (Web of Science)
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... Ver más Contraer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Número de citas: 1 (Scopus)

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

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