Carazo García, José María Autor
ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis
- Herreros D.
- Kiska J.
- Ramírez-Aportela E.
- Filipovic J.
- Carazo J.M.
- Sorzano C.O.S.
Journal of Molecular Biology - 1/1/2023
- CiteScore: 10,8 (2022)
- SJR: 2,421 (2022)
- SNIP: 1,281 (2022)
- Scopus
- ORCID
- Web of Science
XTEND: Extending the depth of field in cryo soft X-ray tomography
- Otón J.
- Pereiro E.
- Conesa J.
- Chichón F.
- Luque D.
- Rodríguez J.
- Pérez-Berná A.
- Sorzano C.
- Klukowska J.
- Herman G.
- Vargas J.
- Marabini R.
- Carrascosa J.
- Carazo J.
Scientific Reports - 4/04/2017
- Cuartil JCR: Q1 (2017)
- Cuartil SJR: Q1
- Factor Impacto JCR: 4,122 (2022)
- Impacto Normalizado por Categoría: 0,886 (2017)
- CiteScore: 7,1 (2020)
- SJR: 1,533 (2017)
- SNIP: 1,263 (2017)
- Impacto JCR a 5 años: 4,609
- Categorías JCR: MULTIDISCIPLINARY SCIENCES
- Categorías SJR: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
X-ray structure of full-length human RuvB-Like 2-mechanistic insights into coupling between ATP binding and mechanical action
- Silva, Sara T. N.
- Brito, Jose A.
- Arranz, Rocio
- Sorzano, Carlos Oscar S.
- Ebel, Christine
- Doutch, James
- Tully, Mark D.
- Carazo, Jose-Maria
- Carrascosa, Jose L.
- Matias, Pedro M.
- Bandeiras, Tiago M.
Scientific Reports - 13/09/2018
10.1038/s41598-018-31997-z Ver en origen
- Cuartil SJR: Q1
- Factor Impacto JCR: 4,011 (2018)
- CiteScore: 4,29 (2018)
- SJR: 1,414 (2018)
- SNIP: 1,24 (2018)
- Impacto JCR a 5 años: 4,525
- Categorías JCR: MULTIDISCIPLINARY SCIENCES
- Categorías SJR: Multidisciplinary (Q1)
- Scopus
- ORCID
- Web of Science
Xmipp: An image processing package for electron microscopy
- Marabini, R.
- Masegosa, I.M.
- San Martín, M.C.
- Marco, S.
- Fernández, J.J.
- De La Fraga, L.G.
- Vaquerizo, C.
- Carazo, J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/01/1996
10.1006/jsbi.1996.0036 Ver en origen
- Factor Impacto JCR: 3,071 (2022)
- Impacto Normalizado por Categoría: 3,149 (1996)
- CiteScore: 5,5 (2020)
- Scopus
- ORCID
- Web of Science
XMIPP: a new generation of an open-source image processing package for electron microscopy
- Sorzano, C.O.S.
- Marabini, R.
- Velázquez-Muriel, J.
- Bilbao-Castro, J.R.
- Scheres, S.H.W.
- Carazo, J.M.
- Pascual-Montano, A.
JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2004
10.1016/j.jsb.2004.06.006 Ver en origen
- Cuartil JCR: Q2 (2004)
- Cuartil SJR: Q2
- Factor Impacto JCR: 3,132 (2022)
- Impacto Normalizado por Categoría: 6,073 (2004)
- CiteScore: 5,5 (2020)
- SJR: 2,385 (2004)
- SNIP: 1,286 (2004)
- Categorías SJR: Structural Biology (Q2)
- Scopus
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- Web of Science
Xmipp 3.0: An improved software suite for image processing in electron microscopy
- de la Rosa-Trevin, J. M.
- Oton, J.
- Marabini, R.
- Zaldivar, A.
- Vargas, J.
- Carazo, J. M.
- Sorzano, C. O. S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2013
10.1016/j.jsb.2013.09.015 Ver en origen
- Cuartil JCR: Q2 (2013)
- Cuartil SJR: Q1
- Factor Impacto JCR: 3,369 (2013)
- Impacto Normalizado por Categoría: 5,507 (2013)
- CiteScore: 5,5 (2020)
- SJR: 2,596 (2013)
- SNIP: 1,256 (2013)
- Impacto JCR a 5 años: 3,407
- Categorías JCR: CELL BIOLOGY
- Categorías SJR: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
West-Life: A Virtual Research Environment for structural biology
- Morris C.
- Andreetto P.
- Banci L.
- Bonvin A.M.J.J.
- Chojnowski G.
- Cano L.d.
- Carazo J.M.
- Conesa P.
- Daenke S.
- Damaskos G.
- Giachetti A.
- Haley N.E.C.
- Hekkelman M.L.
- Heuser P.
- Joosten R.P.
- Kouřil D.
- Křenek A.
- Kulhánek T.
- Lamzin V.S.
- Nadzirin N.
- Perrakis A.
- Rosato A.
- Sanderson F.
- Segura J.
- Schaarschmidt J.
- Sobolev E.
- Traldi S.
- Trellet M.E.
- Velankar S.
- Verlato M.
- Winn M.
Journal of Structural Biology: X - 1/01/2019
- Factor Impacto JCR: 3,071 (null)
- CiteScore: 1,7 (2020)
- Impacto JCR a 5 años: 3,529
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Categorías SJR: Structural Biology
- Scopus
- ORCID
- Web of Science
Volumetric restrictions in single particle 3DEM reconstruction
- Sorzano, C.O.S.
- Velázquez-Muriel, J.A.
- Marabini, R.
- Herman, G.T.
- Carazo, J.M.
Pattern Recognition - 1/02/2008
10.1016/j.patcog.2007.06.010 Ver en origen
- Cuartil JCR: Q2 (2008)
- Cuartil SJR: Q1
- Factor Impacto JCR: 3,279 (2022)
- Impacto Normalizado por Categoría: 0,326 (2008)
- CiteScore: 15,7 (2020)
- SJR: 1,196 (2008)
- SNIP: 2,213 (2008)
- Categorías SJR: Artificial Intelligence (Q1); Computer Vision and Pattern Recognition (Q1); Signal Processing (Q1); Software (Q1)
- Scopus
- ORCID
- Web of Science
Volumetric constraints in 3D tomography applied to electron microscopy
- Marabini R.
- Herman G.
- Sorzano C.
- Carazo J.
2002 Ieee International Symposium on Biomedical Imaging, Proceedings - 1/1/2002
10.1109/isbi.2002.1029339 Ver en origen
- Scopus
- ORCID
- Web of Science
Variations of the three-dimensional structure of the Escherichia coli ribosome in the range of overlap views. An application of the methods of multicone and local single-cone three-dimensional reconstruction.
- CARAZO, JM
- WAGENKNECHT, T
- FRANK, J
Biophysical Journal - 1/03/1989
- CiteScore: 6,3 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,156 (2014)
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- Cuartil SJR: Q3
- CiteScore: 2,2 (2020)
- SJR: 0,751 (2013)
- SNIP: 0,362 (2013)
- Categorías SJR: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
10.1117/12.185208 Ver en origen
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,312 (2014)
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- Cuartil JCR: Q2 (2021)
- Impacto Normalizado por Categoría: 0,595 (2021)
- CiteScore: 2,2 (2020)
- SJR: 0,711 (2020)
- SNIP: 0,57 (2020)
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- Factor Impacto JCR: 1,626 (2010)
- CiteScore: 2,6 (2020)
- SJR: 1,408 (2010)
- SNIP: 0,493 (2010)
- Impacto JCR a 5 años: 2,185
- Categorías JCR: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 Ver en origen
- CiteScore: 1,8 (2020)
- Scopus
- ORCID
- Web of Science
Double Hexamer Structure Of The Archaeal Helicase MCM From Methanobacterium Thermoautotrophicum
- Gomez-Llorente, Yacob
- Fletcher, Ryan J.
- Chen, Xiaojiang S.
- Jose Maria Carazo Garcia
- Carmen San Martín
Biophysical Journal - 02/2009
- ORCID
Consistent and elastic registration of histological sections using vector-spline regularization
- Arganda-Carreras, Ignacio
- Sorzano, Carlos O. S.
- Marabini, Roberto
- Carazo, Jose Maria
- Ortiz-de-Solorzano, Carlos
- Kybic, Jan
- Beichel, RR
COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006
10.1007/11889762_8 Ver en origen
- CiteScore: 1,8 (2020)
- SJR: 0,317 (2006)
- SNIP: 0,679 (2006)
- Scopus
- ORCID
- Web of Science
CBR-Tagger: A case-based reasoning approach to the gene/protein mention problem
- Neves M.
- Chagoyen M.
- Carazo J.M.
- Pascual-Montano A.
Bionlp 2008 - Current Trends In Biomedical Natural Language Processing, Proceedings of The Workshop - 1/1/2008
- Scopus
- ORCID
Biological sequence analysis on distributed-shared memory multiprocessors
- Rodriguez A.
- de la Fraga L.G.
- Zapata E.L.
- Carazo J.M.
- Trelles O.
Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998
- Scopus
- ORCID
BioImage, the data base of volume images: Update on the first prototype
- Jose Maria Carazo Garcia
- Monica Chagoyen
- Lucini, JL
- Stelzer, E
- Lindek, S
- Fritsch, R
- Engel, A
- Heyman, JB
- Fita, I
- Susana G Kalko
- Henn, C
- Pittet, JJ
- McNeil, P
- Rodriquez-Tome, P
- Shotton, D
- Boudier, T
- Machtynger, J
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
AutoRes: Structure resolution determination through autocorrelation analysis
- J. Vargas
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
3dem Gordon Research Conference 2015 - 2015
- ORCID
A semantic mediation approach for problems in computational molecular biology
Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003
- Categorías SJR: Transportation
- Scopus
- ORCID
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 Ver en origen
- Categorías SJR: Computer Vision and Pattern Recognition
- Scopus
- ORCID
- Web of Science
A new image translational alignment method with an application in electron crystallography
- Roca, R
- Danielsson, PE
- Jose Maria Carazo Garcia
- Jose-Jesus Fernandez
Electron Microscopy 1998, Vol 1 - 1998
- ORCID
Este autor no tiene patentes.
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- Factor Impacto JCR: 7,464 (2021)
- CiteScore: 10,5 (2021)
- SJR: 2,596 (2021)
- SNIP: 1,618 (2021)
- Impacto JCR a 5 años: 7,913
- Categorías JCR: VIROLOGY
- Scopus
- ORCID
- Web of Science
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7,8 (2022)
- SJR: 1,154 (2022)
- SNIP: 1,263 (2022)
- Scopus
- ORCID
- Web of Science
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- Cuartil JCR: Q3 (2005)
- Cuartil SJR: Q2
- Factor Impacto JCR: 0,5 (2022)
- Impacto Normalizado por Categoría: 0,442 (2005)
- CiteScore: 2,1 (2020)
- SJR: 0,6 (2005)
- SNIP: 1,719 (2005)
- Categorías SJR: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
- Trelles, O
- Ceron, C
- Wang, HC
- Dopazo, J
- Carazo, JM
Bioinformatics - 1/07/1998
10.1093/bioinformatics/14.6.544
- CiteScore: 9,9 (2020)
- Scopus
- ORCID
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
iNEXT: a European facility network to stimulate translational structural biology
- Rolf Boelens
- Dmitri Svergun
- Jan Ellenberg
- Cusack, Stephen
- Martin A. Walsh
- Banci, Lucia
- Harald Schwalbe
- Perrakis, Anastassis
- van Leeuwenhoek, Antoni
- Vladimir Sklenar
- Jose Maria Carazo Garcia
- Hartmut Oschkinat
- Thompson, Andrew
- Thunnissen, Marjolein
- Koster, Bram
- Gordon Leonard
- Brutscher, Bernhard
- Stuart, David I.
- Poul Nissen
- Wacklin, Hanna
- Perczel, Andras
- Margarida Archer
- Wierenga, Rik
- Spyroulias, Georgios A.
- Sussman, Joel
- iNEXT Consortium
Febs Letters - 06/2018
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- Cuartil SJR: Q4
- Factor Impacto JCR: 2,867 (2020)
- Impacto JCR a 5 años: 4,474
- Categorías JCR: CELL BIOLOGY
- Categorías SJR: Structural Biology (Q4)
- Scopus
- ORCID
- Web of Science
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- Factor Impacto JCR: 6,7 (2022)
- CiteScore: 10,5 (2021)
- SJR: 2,596 (2021)
- SNIP: 1,618 (2021)
- Impacto JCR a 5 años: 6,7
- Categorías JCR: VIROLOGY
Índice h
Scopus: 52
Web of Science: 54
Índice i10
Scopus: 178
Web of Science: 192
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Proyectos de investigación en la UAL
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Acrónimo 99109Desde: 2 de junio de 1999Hasta: 2 de junio de 2000Financiado por: Ministerio de Asuntos ExterioresImporte de financiación: 19.232,39 EURRol: Investigador