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Carazo García, José María Autor

Open Access

Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA

  • Melero, Roberto
  • Rajagopalan, Sridharan
  • Lazaro, Melisa
  • Joerger, Andreas C.
  • Brandt, Tobias
  • Veprintsev, Dmitry B.
  • Lasso, Gorka
  • Gil, David
  • Scheres, Sjors H. W.
  • Maria Carazo, Jose
  • Fersht, Alan R.
  • Valle, Mikel
... Ver más Contraer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 11/01/2011

10.1073/pnas.1015520107

Número de citas: 62 (Web of Science) 68 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 9,681 (2011)
  • CiteScore: 16,2 (2020)
  • SJR: 6,864 (2011)
  • SNIP: 2,642 (2011)
  • Impacto JCR a 5 años: 10,472
  • Categorías JCR: MULTIDISCIPLINARY SCIENCES
  • Categorías SJR: Multidisciplinary (Q1)

Outlier detection for single particle analysis in Electron Microscopy

  • Sorzano, C. O. S.
  • Vargas, J.
  • de la Rosa-Trevin, J. M.
  • Zaldivar-Peraza, A.
  • Oton, J.
  • Abrishami, V.
  • Foche, I.
  • Marabini, R.
  • Caffarena, G.
  • Carazo, J. M.
  • Ortuno, F
  • Rojas, I
... Ver más Contraer

Proceedings Iwbbio 2014: International Work-Conference on Bioinformatics and Biomedical Engineering, Vols 1 and 2 - 2014

Número de citas: 10 (Web of Science)
  • Cuartil JCR: Q2 (2014)
  • Impacto Normalizado por Categoría: 3,192 (2014)
Open Access

Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors

  • Martinez, Marta
  • Sorzano, Carlos O. S.
  • Pascual-Montano, Alberto
  • Carazo, Jose M.

PLoS One - 24/05/2017

10.1371/journal.pone.0178316 Ver en origen

Número de citas: 2 (Web of Science) 1 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 2,766 (2017)
  • CiteScore: 5,3 (2020)
  • SJR: 1,164 (2017)
  • SNIP: 1,15 (2017)
  • Impacto JCR a 5 años: 3,352
  • Categorías JCR: MULTIDISCIPLINARY SCIENCES
  • Categorías SJR: Agricultural and Biological Sciences (miscellaneous) (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1)
Open Access

Structure and Non-Structure of Centrosomal Proteins

  • Dos Santos, Helena G.
  • Abia, David
  • Janowski, Robert
  • Mortuza, Gulnahar
  • Bertero, Michela G.
  • Boutin, Mailys
  • Guarin, Nayibe
  • Mendez-Giraldez, Raul
  • Nunez, Alfonso
  • Pedrero, Juan G.
  • Redondo, Pilar
  • Sanz, Maria
  • Speroni, Silvia
  • Teichert, Florian
  • Bruix, Marta
  • Carazo, Jose M.
  • Gonzalez, Cayetano
  • Reina, Jose
  • Valpuesta, Jose M.
  • Vernos, Isabelle
  • Zabala, Juan C.
  • Montoya, Guillermo
  • Coll, Miquel
  • Bastolla, Ugo
  • Serrano, Luis
... Ver más Contraer

Plos One - 9/05/2013

10.1371/journal.pone.0062633

Número de citas: 16 (Web of Science) 14 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 3,534 (2013)
  • CiteScore: 5,3 (2020)
  • SJR: 1,772 (2013)
  • SNIP: 1,166 (2013)
  • Impacto JCR a 5 años: 4,015
  • Categorías JCR: MULTIDISCIPLINARY SCIENCES
  • Categorías SJR: Agricultural and Biological Sciences (miscellaneous) (Q1); Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1)

Non-rigid consistent registration of 2D image sequences

  • Arganda-Carreras, I.
  • Sorzano, C. O. S.
  • Thevenaz, P.
  • Munoz-Barrutia, A.
  • Kybic, J.
  • Marabini, R.
  • Carazo, J. M.
  • Ortiz-de Solorzano, C.
... Ver más Contraer

Physics in Medicine and Biology - 21/10/2010

10.1088/0031-9155/55/20/012 Ver en origen

Número de citas: 15 (Web of Science) 12 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 3,057 (2010)
  • CiteScore: 5,9 (2020)
  • SJR: 1,888 (2010)
  • SNIP: 1,799 (2010)
  • Impacto JCR a 5 años: 3,129
  • Categorías JCR: ENGINEERING, BIOMEDICAL
  • Categorías SJR: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)

Transfer function restoration in 3D electron microscopy via iterative data refinement

  • Sorzano, COS
  • Marabini, R
  • Herman, GT
  • Censor, Y
  • Carazo, JM

Physics in Medicine and Biology - 21/02/2004

10.1088/0031-9155/49/4/003 Ver en origen

Número de citas: 16 (Web of Science) 16 (Scopus)
  • Cuartil JCR: Q2 (2004)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 2,368 (2022)
  • Impacto Normalizado por Categoría: 0,34 (2004)
  • CiteScore: 5,9 (2020)
  • SJR: 1,047 (2004)
  • SNIP: 1,645 (2004)
  • Categorías SJR: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)

A theoretical model for EM-ML reconstruction algorithms applied to rotating PET scanners

  • Iriarte, A.
  • Sorzano, C. O. S.
  • Carazo, J. M.
  • Rubio, J. L.
  • Marabini, R.

Physics in Medicine and Biology - 7/04/2009

10.1088/0031-9155/54/7/004 Ver en origen

Número de citas: 4 (Web of Science) 5 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 2,781 (2009)
  • CiteScore: 5,9 (2020)
  • SJR: 1,543 (2009)
  • SNIP: 1,941 (2009)
  • Impacto JCR a 5 años: 2,99
  • Categorías JCR: RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
  • Categorías SJR: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)

On a new computationally fast image invariant based on bispectral projections

  • Marabini, R
  • Carazo, JM

PATTERN RECOGNITION LETTERS - 1/08/1996

10.1016/0167-8655(96)00053-0 Ver en origen

Número de citas: 12 (Web of Science) 16 (Scopus)
  • CiteScore: 6,7 (2020)

Cluster validity based on the hard tendency of the fuzzy classification

  • Rivera F.F.
  • Zapata E.L.
  • Carazo J.M.

Pattern Recognition Letters - 1/1/1990

10.1016/0167-8655(90)90050-c

Número de citas: 17 (Web of Science) 17 (Scopus)
  • CiteScore: 6,7 (2020)

Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction

  • Sorzano, COS
  • Marabini, R
  • Herman, GT
  • Carazo, JM

Pattern Recognition - 1/12/2005

10.1016/j.patcog.2005.03.013 Ver en origen

Número de citas: 7 (Web of Science) 7 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 15,7 (2020)
  • SJR: 1,069 (2005)
  • SNIP: 2,922 (2005)
  • Categorías SJR: Artificial Intelligence (Q1); Computer Vision and Pattern Recognition (Q1); Signal Processing (Q1); Software (Q1)
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... Ver más Contraer

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 Ver en origen

Número de citas: 1 (Web of Science) 4 (Scopus)
  • CiteScore: 0,8 (2020)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 5 (Web of Science) 1 (Scopus)
  • Cuartil JCR: Q2 (2021)
  • Impacto Normalizado por Categoría: 0,595 (2021)
  • CiteScore: 2,2 (2020)
  • SJR: 0,711 (2020)
  • SNIP: 0,57 (2020)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Número de citas: 14 (Scopus)
  • Cuartil SJR: Q3
  • CiteScore: 2,2 (2020)
  • SJR: 0,751 (2013)
  • SNIP: 0,362 (2013)
  • Categorías SJR: Genetics (Q3); Molecular Biology (Q3)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 67 (Web of Science) 52 (Scopus)
  • Factor Impacto JCR: 1,626 (2010)
  • CiteScore: 2,6 (2020)
  • SJR: 1,408 (2010)
  • SNIP: 0,493 (2010)
  • Impacto JCR a 5 años: 2,185
  • Categorías JCR: BIOCHEMICAL RESEARCH METHODS

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... Ver más Contraer

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Número de citas: 1 (Web of Science) 1 (Scopus)
  • CiteScore: 1,8 (2020)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... Ver más Contraer

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 9 (Web of Science) 4 (Scopus)
  • Cuartil JCR: Q2 (2014)
  • Impacto Normalizado por Categoría: 0,312 (2014)
  • CiteScore: 0,8 (2020)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)
  • Cuartil JCR: Q2 (2014)
  • Impacto Normalizado por Categoría: 0,156 (2014)
  • CiteScore: 0,8 (2020)

Image reconstruction on hypercube computers

  • Zapata E.L.
  • Benavides I.
  • Rivera F.F.
  • Bruguera J.D.
  • Carazo J.M.

1/12/1990

Número de citas: 4 (Scopus)

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

  • Carazo J.M.
  • Carrascosa J.
  • Santisteban A.

1/12/1985

Número de citas:

The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation

  • Tiziana Ginex
  • Wieczór, M.
  • Krieger, J.
  • Orozco, M.
  • Jose Maria Carazo Garcia
  • Carmen Gil

Xx Congreso de la Sociedad Española de Química Terapéutica - 2022

  • ORCID

Effects of the downsampling scheme on three-dimensional electron microscopy of single particles

  • Sorzano, C. O. S.
  • Iriarte, A.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE

WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009

10.1109/wisp.2009.5286563 Ver en origen

Número de citas: 3 (Scopus)
  • Categorías SJR: Computer Networks and Communications; Media Technology; Signal Processing

Electron tomography of biological specimens

  • Marabini R.
  • Carmen San Martin M.
  • Carazo J.

Studies in Health Technology and Informatics - 1/1/1997

10.3233/978-1-60750-874-8-53

Número de citas: 2 (Scopus)
  • CiteScore: 1,2 (2020)

Functional classification of genes using non-negative independent component analysis

  • Monica Chagoyen
  • Fernandes, Hugo
  • Jose Maria Carazo Garcia
  • Pascual-Montano, Alberto

Progress In Industrial Mathematics At Ecmi - 2008

  • ORCID

Minisymposium \"New Trends in the Analysis of Functional Genomics Data\"

  • Jose Maria Carazo Garcia
  • Pascual, Alberto

Progress In Industrial Mathematics At Ecmi - 2008

  • ORCID

Biological sequence analysis on distributed-shared memory multiprocessors

  • Rodriguez A.
  • de la Fraga L.G.
  • Zapata E.L.
  • Carazo J.M.
  • Trelles O.

Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998

10.1109/empdp.1998.647174

Número de citas: 1 (Scopus)

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Número de citas:

A semantic mediation approach for problems in computational molecular biology

  • Chagoyen M.
  • Kurul M.
  • De-Alarcon P.
  • Santini S.
  • Ludäscher B.
  • Carazo J.
  • Gupta A.
... Ver más Contraer

Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003

10.1109/csb.2003.1227339

Número de citas:
  • Categorías SJR: Transportation

Este autor no tiene patentes.

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... Ver más Contraer

03/2018

10.1101/279398

  • ORCID

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

05/2020

10.1101/2020.05.12.069831

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v1

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

10/2018

10.1101/433284

  • ORCID

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Número de citas: 62 (Scopus)
  • CiteScore: 5 (2020)
Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Número de citas: 3 (Web of Science) 4 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 9 (2020)
  • SJR: 4,47 (2004)
  • SNIP: 1,507 (2004)
  • Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)
Open Access

ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Georges A.d.
  • Abrishami V.
  • Vargas J.

Progress In Biophysics & Molecular Biology - 1/09/2021

10.1016/j.pbiomolbio.2021.01.001

Número de citas: 2 (Web of Science) 1 (Scopus)
  • Factor Impacto JCR: 4,799 (2021)
  • CiteScore: 5,8 (2020)
  • SJR: 0,859 (2020)
  • SNIP: 0,995 (2020)
  • Impacto JCR a 5 años: 3,907
  • Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Última actualización de los datos: 27/04/24 8:34
Próxima recolección programada: 4/05/24 3:00