Elegir campos a generar del autor José María

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Correo Electrónico
Artículos Todos / Ninguno
A deep learning approach to the automatic detection of alignment errors in cryo-electron tomographic reconstructions
Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
A Fijivirus Major Viroplasm Protein Shows RNA-Stimulated ATPase Activity by Adopting Pentameric and Hexameric Assemblies of Dimers
A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis
Local defocus estimation in single particle analysis in cryo-electron microscopy
ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis
Umbrella Data Management Plans to Integrate FAIR Data : Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
Performance and Quality Comparison of Movie Alignment Software for Cryogenic Electron Microscopy
Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials
Emerging Themes in CryoEM─Single Particle Analysis Image Processing
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
Cryo-Electron Microscopy: The field of 1,000+ methods
On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy
BIPSPI+: Mining Type-Specific Datasets of Protein Complexes to Improve Protein Binding Site Prediction
Higher resolution in cryo-EM by the combination of macromolecular prior knowledge and image-processing tools
New Tools and Pipelines for Continuous Heterogeneity Analysis from Cryo-EM using Normal Modes and 3D Zernike Polynomials
Image processing tools for the validation of CryoEM maps
Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0
Structural analysis of receptors and actin polarity in platelet protrusions
Identification of incorrectly oriented particles in cryo-EM single particle analysis
DeepAlign, a 3D alignment method based on regionalized deep learning for Cryo-EM
Cryo-EM and Single-Particle Analysis with Scipion
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM
Cryo-EM density maps adjustment for subtraction, consensus and sharpening
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
Self-assembly and regulation of protein cages from pre-organised coiled-coil modules
FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation
PDBe-KB: collaboratively defining the biological context of structural data
Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials
Advances in xmipp for cryo–electron microscopy: From xmipp to scipion
Principal component analysis is limited to low-resolution analysis in cryoEM
3DBionotes COVID-19 Edition.
Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules.
Integration of Cryo-EM Model Building Software in Scipion
Ribosome-associated vesicles: A dynamic subcompartment of the endoplasmic reticulum in secretory cells
Automatic local resolution-based sharpening of cryo-EM maps
Measuring local-directional resolution and local anisotropy in cryo-EM maps
Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures
Local resolution estimates of cryoEM reconstructions
State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps
Localized reconstruction in Scipion expedites the analysis of symmetry mismatches in cryo-EM data
Measurement of local resolution in electron tomography
MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning
FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy
Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM
The Molecular Control of Calcitonin Receptor Signaling
Structural basis for cooperativity of human monoclonal antibodies to meningococcal factor H-binding protein
DeepRes: A new deep-learning- and aspect-based local resolution method for electron-microscopy maps
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy
3DBIONOTES v3.0: Crossing molecular and structural biology data with genomic variations
Validation of electron microscopy initial models via small angle X-ray scattering curves
Cryo-Electron Tomography and Proteomics studies of centrosomes from differentiated quiescent thymocytes
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces
West-Life: A Virtual Research Environment for structural biology
MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps
Map challenge: Analysis using a pair comparison method based on Fourier shell correlation
Using Scipion for stream image processing at Cryo-EM facilities
A new algorithm for high-resolution reconstruction of single particles by electron microscopy
Deep Consensus, a deep learning-based approach for particle pruning in cryo-electron microscopy
The first single particle analysis Map Challenge: A summary of the assessments
Advances in image processing for single-particle analysis by electron cryomicroscopy and challenges ahead
X-ray structure of full-length human RuvB-Like 2-mechanistic insights into coupling between ATP binding and mechanical action
Blind estimation of DED camera gain in Electron Microscopy
Dynamic kinetochore size regulation promotes microtubule capture and chromosome biorientation in mitosis
Agricultural residues are efficient abrasive tools for weed control
Scipion web tools: Easy to use cryo-EM image processing over the web
3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures
3DBIONOTES v2.0: A web server for the automatic annotation of macromolecular structures
Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo
ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap
Quantitative analysis of 3D alignment quality: Its impact on soft-validation, particle pruning and homogeneity analysis
Gene signature associated with benign neurofibroma transformation to malignant peripheral nerve sheath tumors
XTEND: Extending the depth of field in cryo soft X-ray tomography
Electron microscopy structural insights into CPAP oligomeric behavior: A plausible assembly process of a supramolecular scaffold of the centrosome
A review of resolution measures and related aspects in 3D Electron Microscopy.
Foil-hole and data image quality assessment in 3DEM: Towards high-throughput image acquisition in the electron microscope
Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution
Fast and automatic identification of particle tilt pairs based on Delaunay triangulation.
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
Local analysis of strains and rotations for macromolecular electron microscopy maps
Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
Denoising of high-resolution single-particle electron-microscopy density maps by their approximation using three-dimensional Gaussian functions
3DBIONOTES: A unified, enriched and interactive view of macromolecular information
The Electron Microscopy eXchange (EMX) initiative.
StructMap: Elastic Distance Analysis of Electron Microscopy Maps for Studying Conformational Changes
Intracellular nanoparticles mass quantification by near-edge absorption soft X-ray nanotomography
3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling
Particle alignment reliability in single particle electron cryomicroscopy: a general approach.
A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function
Fast and accurate conversion of atomic models into electron density maps
Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited
Structures of Adenovirus Incomplete Particles Clarify Capsid Architecture and Show Maturation Changes of Packaging Protein L1 52/55k
Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data
Using neighborhood cohesiveness to infer interactions between protein domains
CTF Challenge: Result summary
Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star
A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy
Alignment of direct detection device micrographs using a robust Optical Flow approach
Outlier detection for single particle analysis in Electron Microscopy
The soft x-ray transform
Efficient initial volume determination from electron microscopy images of single particles
Error analysis of the principal component analysis demodulation algorithm
Xmipp 3.0: An improved software suite for image processing in electron microscopy
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs
Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques
Fringe pattern denoising by image dimensionality reduction
Structure and Non-Structure of Centrosomal Proteins
On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy
FASTDEF: Fast defocus and astigmatism estimation for high-throughput transmission electron microscopy
Generalization of the Principal Component Analysis algorithm for interferometry
Image processing for Cellular tomography using soft X-rays
Data management challenges in three-dimensional EM
Corrigendum to "Fast, robust and accurate determination of transmission electron microscopy contrast transfer function" [J. Struct. Biol. 160 (2007) 249-262]
Shack-Hartmann centroid detection using the spiral phase transform
Image formation in cellular X-ray microscopy
Two-step demodulation based on the Gram-Schmidt orthonormalization method
Integrating human and murine anatomical gene expression data for improved comparisons
Two-step interferometry by a regularized optical flow algorithm
Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA
PRIDEViewer: A novel user-friendly interface to visualize PRIDE XML files
Maximum likelihood based classification of electron tomographic data
Non-rigid consistent registration of 2D image sequences
OmicsHub Proteomics Software Tool.
Data Management, Analysis, Standardization and Reproducibility in a ProteoRed Multicentric Quantitative Proteomics Study with the OmicsHub Proteomics Software Tool.
A clustering approach to multireference alignment of single-particle projections in electron microscopy
MARQ: An online tool to mine GEO for experiments with similar or opposite gene expression signatures
Dynamic Effects of Cofactors and DNA on the Oligomeric State of Human Mitochondrial DNA Helicase
Conformational Rearrangements of SV40 Large T Antigen during Early Replication Events
Moara: A Java library for extracting and normalizing gene and protein mentions
tmRNA·SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes
Averaging of Electron Subtomograms and Random Conical Tilt Reconstructions through Likelihood Optimization
aGEM: An integrative system for analyzing spatial-temporal gene-expression information
Automatic particle selection from electron micrographs using machine learning techniques
Insights into the molecular architecture of the 26S proteasome
Introducing robustness to maximum-likelihood refinement of electron-microsopy data
SENT: Semantic features in text
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information
Maximum likelihood refinement of electron microscopy data with normalization errors
Marker-free image registration of electron tomography tilt-series
A theoretical model for EM-ML reconstruction algorithms applied to rotating PET scanners
Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra
Comparison of molecular dynamics and superfamily spaces of protein domain deformation
CentrosomeDB: A human centrosomal proteins database
Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs
Image processing for electron microscopy single-particle analysis using XMIPP
Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA plus hexameric helicase
Assessment of protein set coherence using functional annotations
Design and analysis of an object-oriented discrete-event simulation engine for ATM telecommunication networks
Interoperability with Moby 1.0 - It\'s better than sharing your toothbrush!
ChIPCodis: Mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data
Volumetric restrictions in single particle 3DEM reconstruction
Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function
Modeling experimental image formation for likelihood-based classification of electron microscopy
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
Quaternary structures of tumor suppressor p53 and a specific p53-DNA complex
Parameter optimization in 3D reconstruction on a large scale grid
Integrating electron microscopy information into existing Distributed Annotation Systems
Quasi-atomic model of bacteriophage T7 procapsid shell: Insights into the structure and evolution of a basic fold
Loading a ring: Structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase
Electron tomography of complex biological specimens on the Grid
Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization
On the nature of 2D crystal unbending
Optimization problems in electron microscopy of single particles
Parallelization of reconstruction algorithms in three-dimensional electron microscopy
BioNMF: A versatile tool for non-negative matrix factorization in biology
A literature-based similarity metric for biological processes
Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies
Image processing and 3-D reconstruction in electron microscopy
Quaternary polymorphism of replicative helicase G40P: Structural mapping and domain rearrangement
Structural basis for the cooperative assembly of large T antigen on the origin of replication
Nonsmooth nonnegative matrix factorization (nsNMF)
Biclustering of gene expression data by non-smooth non-negative matrix factorization
Integrated analysis of gene expression by association rules discovery
Discovering semantic features in the literature: a foundation for building functional associations
Double hexamer disruption and biochemical activities of Methanobacterium thermoautotrophicum MCM
Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum
Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction
Fast maximum-likelihood refinement of electron microscopy images
Classification of single-projection reconstructions for cryo-electron microscopy data of icosahedral viruses
Maximum-likelihood multi-reference refinement for electron microscopy images
Mining association rules from biological databases
SPI-EM: Towards a tool for predicting CATH superfamilies in 3D-EM maps
Grid computing in structure determination of biological specimens by electron microscope tomography
XMIPP: a new generation of an open-source image processing package for electron microscopy
Normalizing projection images: A study of image normalizing procedures for single particle three-dimensional electron microscopy
Designing and executing scientific workflows with a programmable integrator
A multiresolution approach to orientation assignment in 3D electron microscopy of single particles
The potential of grid computing in three-dimensional electron microscopy
3-D reconstruction of 2-D crystals in real space
Transfer function restoration in 3D electron microscopy via iterative data refinement
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing
High performance computing in electron microscope tomography of complex biological structures
Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication
FEMME database: Topologic and geometric information of macromolecules
A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment
Engene: The processing and exploratory analysis of gene expression data
New electron microscopy database and deposition system
Spin images and neural networks for efficient content-based retrieval in 3D object databases
Volumetric constraints in 3D tomography applied to electron microscopy
3D reconstruction of 2D crystals from projections in real space
Modeling shape and topology of low-resolution density maps of biological macromolecules
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE)
High-performance electron tomography of complex biological specimens
Quantitative self-organizing maps for clustering electron tomograms
Smoothly distributed fuzzy c-means: A new self-organizing map
The DnaB center dot DnaC complex: a structure based on dimers assembled around an occluded channel
A novel neural network technique for analysis and classification of EM single-particle images
The effect of overabundant projection directions on 3D reconstruction algorithms
pH-Controlled quaternary states of hexameric DnaB helicase
A new phase consistency criterion and its application in electron crystallography
Image processing approaches to biological three-dimensional electron microscopy
The need for a shared database infrastructure: Combining X-ray crystallography and electron microscopy
Mapping and fuzzy classification of macromolecular images using self-organizing neural networks
Sequence-related protein export NTPases encoded by the conjugative transfer region of RP4 and by the cag pathogenicity island of Helicobacter pylori share similar hexameric ring structures
Large T-antigen double hexamers imaged at the simian virus 40 origin of replication
Helicases as nucleic acid unwinding machines
Application of the fuzzy kohonen clustering network to biological macromolecules images classification
A framework for querying a database for structural information on 3D images of macromolecules: A Web-based query-by-content prototype on the BioImage macromolecular server
The BioImage Database Project: Organizing multidimensional biological images in an object-relational database
The three-dimensional structure of a DNA translocating machine at 10 Å resolution
Organising multi-dimensional biological image information: The BioImage database
Effects of uneven sampling in 3D reconstructions.
Self-organizing tree-growing network for the classification of protein sequences
Polymorphic quaternary organization of the Bacillus subtilis bacteriophage SPP1 replicative helicase (G40P)
Automatic classification of biological particles from electron-microscopy images using conventional and genetic-algorithm optimized learning vector quantization
Computational space reduction and parallelization of a new clustering approach for large groups of sequences
Parallel implementation of DNAml program on message-passing architectures
Self-organizing free growing network for classifying amino acids
Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC
3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs)
A spectral estimation approach to contrast transfer function detection in electron microscopy
Three-dimensional reconstruction from reduced sets of very noisy images acquired following a single-axis tilt schema: Application of a new three- dimensional reconstruction algorithm and objective comparison with weighted backprojection
The RepA protein of plasmid RSF1010 is a replicative DNA helicase
A new type of unsupervised growing neural network for biological sequence classification that adopts the topology of a phylogenetic tree
Six molecules of SV40 large T antigen assemble in a propeller-shaped particle around a channel
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree
Implementation and experimental evaluation of the constrained ART algorithm on a multicomputer system
Analysis of structural variability within two-dimensional biological crystals by a combination of patch averaging techniques and self organizing maps
On a new computationally fast image invariant based on bispectral projections
Proposal for a new distributed database of macromolecular and subcellular structures from different areas of microscopy
Xmipp: An image processing package for electron microscopy
Confidence limits for resolution estimation in image averaging by random subsampling
AN IMAGE-PROCESSING APPROACH TO DOTPLOTS - AN X-WINDOW-BASED PROGRAM FOR INTERACTIVE ANALYSIS OF DOTPLOTS DERIVED FROM SEQUENCE AND STRUCTURAL DATA
A STRUCTURAL MODEL FOR THE ESCHERICHIA-COLI DNAB HELICASE BASED ON ELECTRON-MICROSCOPY DATA
Towards a data-bank of three-dimensional macromolecular structures: A WWW-based prototype
Pattern recognition and classification of images of biological macromolecules using neural networks
Study of the collars extracted from T3 and 029 viral particles
Practical issues on invariant image averaging using the Bispectrum
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures
Pattern recognition and classification of images of biological macromolecules using artificial neural networks
Speech recognizer optimization and real-time implementation on a multitransputer array
Image reconstruction on hypercube computers: Application to electron microscopy
Three-dimensional structure of T3 connector purified from overexpressing bacteria
Detection, classification and 3D reconstruction of biological macromolecules on hypercube computers
Electron microscopy study of GroEL chaperonin: Different views of the aggregate appear as a function of cell growth temperature
Purity, purposes, and possibilities of classification techniques in electron microscopy: A reply to comments by Marin van Heel
Filtered back projection on shared-memory multiprocessors
Study of two related configurations of the neck of bacteriophage Ø29
Multidimensional fast Fourier transform into SIMD hypercubes
Cluster validity based on the hard tendency of the fuzzy classification
Image template matching on hypercube SIMD computers
Three-dimensional reconstruction of the sevenfolded form of Bacillus subtilis Gro EL chaperonin
Fuzzy sets-based classification of electron microscopy images of biological macromolecules with an application to ribosomal particles.
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures
Variations of the three-dimensional structure of the Escherichia coli ribosome in the range of overlap views. An application of the methods of multicone and local single-cone three-dimensional reconstruction.
Three-dimensional reconstruction of the ribosome from Escherichia coli.
Three-dimensional matching of macromolecular structures obtained from electron microscopy: an application to the 70S and 50S E. coli ribosomal particles.
Three-dimensional structure of 50 S Escherichia coli ribosomal subunits depleted of proteins L7/L12.
Bacteriophage T3 connector: Three-dimensional structure and comparison with other viral head-tail connecting regions
Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli.
A new non-crystallographic image-processing technique reveals the architecture of ribosomes.
Purification and Organization of the Gene 1 Portal Protein Required for Phage P22 DNA Packaging
Restoration of direct Fourier three-dimensional reconstructions of crystalline specimens by the method of convex projections.
Information recovery in missing angular data cases: an approach by the convex projections method in three dimensions
Three-dimensional reconstruction of the connector of bacteriophage φ29 at 1.8 nm resolution
Computer graphic display method for visualizing three-dimensional biological structures
Bacteriophage T3 gene 8 product oligomer structure
Study of the direct Fourier method for the three‐dimensional reconstruction of objects in the case of a missing angular data range
Three-dimensional reconstruction of bacteriophage φ29 neck particles at 2.2 nm resolution
Structure of phage φ29 connector protein assembled in Vivo
Structural study of tetragonal-ordered aggregates of phage φ29 necks
GENERAL MORPHOLOGY AND CAPSID FINE-STRUCTURE OF AFRICAN SWINE FEVER VIRUS-PARTICLES
Structural localizaton of the proteins of the head to tail connecting region of bacteriophage φ29
Libros, capítulos, tesis Todos / Ninguno
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
Soft X-ray tomography imaging for biological samples
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
Exploring the conformational flexibility of molecular machines
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
A GA-optimized neural network for classification of biological particles from electron-microscopy images
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
Conferencias Todos / Ninguno
Stream processing of CryoElectron Microscopy images at the acquisition site
Evolutionary genomics of SARS-CoV-2: key for viral success
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
FSC-Q: A method for quality analysis of cryoEM-derived models
Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography
Oligomeric self-assembly of a coiled-coil-based bipyramidal protein cage
Mesa redonda sobre investigadores y Ciencia Abierta
Analysing cryoEM data quality in the post resolution revolution era: Validity criteria
LocalDeblur: An automatic map sharpening by restauration of local resolution
Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility
Using Scipion for Stream Image Processing at CryoEM Facilities
Improving 3D reconstructions of macromolecular conformations
AutoRes: Structure resolution determination through autocorrelation analysis
An image processing approach to the simulation of electron microscopy volumes of atomic structures
Extracting and normalizing gene/protein mentions with the flexible and trainable Moara Java library
Extraction of biomedical events using case-based reasoning
Moara Project: A Flexible and Trainable Java Library for the Gene/Protein Recognition and Normalization Tasks.
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
Double Hexamer Structure Of The Archaeal Helicase MCM From Methanobacterium Thermoautotrophicum
Functional classification of genes using non-negative independent component analysis
Minisymposium \"New Trends in the Analysis of Functional Genomics Data\"
CBR-Tagger: A case-based reasoning approach to the gene/protein mention problem
Flexible image registration for the identification of best fitted protein models in 3D-EM maps
Flexible fitting in 3D-EM with incomplete data on superfamily variability
Molecular image registration using mutual information and differential evolution optimization
Consistent and elastic registration of histological sections using vector-spline regularization
Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM
Two-way clustering of gene expression profiles by sparse matrix factorization
Grid computing in 3D-EM image processing using Xmipp
Extracting and searching for structural information: A multiresolution approach
Parallelization and comparison of 3D iterative reconstruction algorithms
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy
A semantic mediation approach for problems in computational molecular biology
In the quest of order: The role of pattern recognition in microscopy image analysis
Image databases: What are they and what do they bring to microscopy
Modeling shape and topology of 3D images of biological specimens
Self-organizing networks for mapping and clustering biological macromolecules images
Improved automatic classification of biological particles from electron-microscopy images using genetic neural nets
Structure of DnaB and DnaB.DnaC complex.
A method for refining the geometry of images collected by the random conical tilt scheme based on common lines
A new image translational alignment method with an application in electron crystallography
BioImage, the data base of volume images: Update on the first prototype
Three-dimensional domain mapping in the bacteriophage phi 29 connector
pH-dependency of the quaternary states of hexameric E-coli DnaB helicase
Polymorphic quaternary organization of the Bacillus subtilis bacteriophage SPP1 replication helicase (G40P)
Biological sequence analysis on distributed-shared memory multiprocessors
Electron tomography of biological specimens
3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING
3D reconstruction of macromolecules on multiprocessors
Mapping strategies for sequential sequence comparison algorithms on LAN-based message passing architectures
Parallel architecture for real-time speech recognition in Spanish
Image reconstruction on hypercube computers
3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
Informes y otros Todos / Ninguno
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
Multitarget Virtual Screening for Drug Repurposing in COVID19
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
Improvements on marker-free images alignment for electron tomography
Automatic local resolution-based sharpening of cryo-EM maps.
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
iNEXT: a European facility network to stimulate translational structural biology
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))
On the suitability of biological structure determination by electron microscopy to grid computing
Biological structure determination by EM is well suited to grid computing
Accessing Information on the Conformational Flexibility of Molecular Machines
New phylogenetic venues opened by a novel implementation of the DNAml algorithm
A variant to the \'random approximation\' of the reference-free alignment algorithm
Métricas del autor Todos / Ninguno
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