Carazo García, José María Author
A deep learning approach to the automatic detection of alignment errors in cryo-electron tomographic reconstructions
- de Isidro-Gómez F.P.
- Vilas J.L.
- Losana P.
- Carazo J.M.
- Sorzano C.O.S.
Journal of Structural Biology - 1/3/2024
- CiteScore: 6.3 (2023)
- SJR: 1.771 (2023
- SNIP: 0.801 (2023
- Scopus
- ORCID
ICAM-1 nanoclusters regulate hepatic epithelial cell polarity by leukocyte adhesion-independent control of apical actomyosin
- Cristina Cacho Navas
- Lopez-Pujante, Carmen
- Reglero-Real, Natalia
- Natalia Colás-Algora
- Ana Cuervo
- J.J. Conesa
- Barroso, Susana
- de Rivas, Gema
- Sergio Ciordia
- Alberto Paradela
- Gianluca D'Agostino
- Manzo, Carlo
- Feito, Jorge
- German Andres
- Molina-Jimenez, Francisca
- Majano, Pedro
- Isabel Correas
- Jose Maria Carazo Garcia
- Nourshargh, Sussan
- Huch, Meritxell
- Jaime Millán
Elife - 10/04/2024
- ORCID
Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
- Herreros D.
- Krieger J.M.
- Fonseca Y.
- Conesa P.
- Harastani M.
- Vuillemot R.
- Hamitouche I.
- Serrano Gutiérrez R.
- Gragera M.
- Melero R.
- Jonic S.
- Carazo J.M.
- Sorzano C.O.S.
Acta Crystallographica Section D-Structural Biology - 1/7/2023
- JCR Impact Factor: 2.6 (2023)
- CiteScore: 7.5 (2022)
- SJR: 3.87 (2022
- SNIP: 1.47 (2022
- JCR 5-year Impact Factor: 5.2
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
A Fijivirus Major Viroplasm Protein Shows RNA-Stimulated ATPase Activity by Adopting Pentameric and Hexameric Assemblies of Dimers
- Llauger G.
- Melero R.
- Monti D.
- Sycz G.
- Huck-Iriart C.
- Cerutti M.L.
- Klinke S.
- Mikkelsen E.
- Tijman A.
- Arranz R.
- Alfonso V.
- Arellano S.M.
- Goldbaum F.A.
- Sterckx Y.G.J.
- Carazo J.M.
- Kaufman S.B.
- Dans P.D.
- Del Vas M.
- Otero L.H.
mBio - 25/4/2023
- JCR Impact Factor: 5.1 (2023)
- CiteScore: 10.8 (2022)
- SJR: 2.283 (2022
- SNIP: 1.357 (2022
- JCR 5-year Impact Factor: 5.9
- JCR Categories: MICROBIOLOGY
- Scopus
- ORCID
- Web of Science
A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis
- Fernández-Giménez E.
- Martínez M.M.
- Marabini R.
- Strelak D.
- Sánchez-García R.
- Carazo J.M.
- Sorzano C.O.S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/12/2023
- JCR Impact Factor: 3 (2023)
- CiteScore: 6.1 (2022)
- SJR: 1.582 (2022
- SNIP: 0.773 (2022
- JCR 5-year Impact Factor: 2.5
- JCR Categories: BIOPHYSICS
- Scopus
- ORCID
Local defocus estimation in single particle analysis in cryo-electron microscopy
- Fernandez-Gimenez E.
- Carazo J.M.
- Sorzano C.O.S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/12/2023
- JCR Impact Factor: 3 (2023)
- CiteScore: 6.1 (2022)
- SJR: 1.582 (2022
- SNIP: 0.773 (2022
- JCR 5-year Impact Factor: 2.5
- JCR Categories: BIOPHYSICS
- Scopus
- ORCID
Umbrella Data Management Plans to Integrate FAIR Data : Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
- David R.
- Richard A.S.
- Connellan C.
- Lauer K.B.
- Chiusano M.L.
- Goble C.
- Houde M.
- Kemmer I.
- Keppler A.
- Lieutaud P.
- Ohmann C.
- Panagiotopoulou M.
- Khan S.R.
- Rybina A.
- Soiland-Reyes S.
- Wit C.
- Wittner R.
- Buono R.A.
- Marsh S.A.
- Audergon P.
- Bonfils D.
- Carazo J.M.
- Charrel R.
- Coppens F.
- Fecke W.
- Filippone C.
- Alvarez E.G.
- Gul S.
- Hermjakob H.
- Herzog K.
- Holub P.
- Kozera L.
- Lister A.L.
- López-Coronado J.
- Madon B.
- Majcen K.
- Martin W.
- Müller W.
- Papadopoulou E.
- Prat C.M.A.
- Romano P.
- Sansone S.A.
- Saunders G.
- Blomberg N.
- Ewbank J.
Data Science Journal - 1/1/2023
- Scopus
- ORCID
ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis
- Herreros D.
- Kiska J.
- Ramírez-Aportela E.
- Filipovic J.
- Carazo J.M.
- Sorzano C.O.S.
JOURNAL OF MOLECULAR BIOLOGY - 1/1/2023
- JCR Impact Factor: 4.7 (2023)
- CiteScore: 10.8 (2022)
- SJR: 2.421 (2022
- SNIP: 1.281 (2022
- JCR 5-year Impact Factor: 4.9
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Performance and Quality Comparison of Movie Alignment Software for Cryogenic Electron Microscopy
- David Střelák
- Daniel Marchán
- José María Carazo
- Carlos O. S. Sorzano
Micromachines - 26/09/2023
- JCR Impact Factor: 3 (2023)
- JCR 5-year Impact Factor: 3
- JCR Categories: NANOSCIENCE & NANOTECHNOLOGY
- Scopus
- ORCID
Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials
- D. Herreros
- R. R. Lederman
- J. M. Krieger
- A. Jiménez-Moreno
- M. Martínez
- D. Myška
- D. Strelak
- J. Filipovic
- C. O. S. Sorzano
- J. M. Carazo
Nature Communications - 11/01/2023
- JCR Impact Factor: 14.7 (2023)
- JCR 5-year Impact Factor: 16.1
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- JCR Impact Factor: 1.626 (2010)
- CiteScore: 2.6 (2020)
- SJR: 1.408 (2010
- SNIP: 0.493 (2010
- JCR 5-year Impact Factor: 2.185
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
High performance computing in electron microscope tomography of complex biological structures
- Fernández J.
- Lawrence A.
- Roca J.
- García I.
- Ellisman M.
- Carazo J.
Lecture Notes In Computer Science - 1/12/2003
- CiteScore: 1.8 (2020)
- SJR: 0.41 (2003
- SNIP: 0.882 (2003
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
Fast Global Image Alignment Algorithm for CryoEM through Vector Compression
- Zarrabeitia O.L.
- Ramirez-Aportela E.
- Carazo J.M.
- Sorzano C.O.S.
Proceedings - International Symposium on Biomedical Imaging - 1/1/2024
10.1109/isbi56570.2024.10635352
- Scopus
- ORCID
Scipion flexibility hub and Scipion chem: New frameworks coupling computational biophysics of protein dynamics and virtual screening to cryo-electron microscopy
- James Krieger
- David Herreros
- del Hoyo, Daniel
- Fonseca, Yunior
- Marcos Gragera
- Carlos P. Mata
- Lomas, Alba
- Ulzurrun, Eugenia
- Pablo Conesa Mingo
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Biophysical Journal - 8/02/2024
- ORCID
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Imaging Data: Adding a new type of annotations to 3DBionotes-WS
- Carolina Simón Guerrero
- Jose Ramon Macias
- Erney Ramírez-Aportela
- Jose Luis Vilas Prieto
- Marta Martinez Gonzalez
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
21st European Conference On Computational Biology - 2022
- ORCID
3DBionotes COVID-19 Structural Hub: a central resource for validation information and refined models
- Jose Ramon Macias
- Carolina Simon-Guerrero
- Erney Ramírez-Aportela
- Jose Luis Vilas Prieto
- Marta Martínez González
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
21st European Conference On Computational Biology - 2022
- ORCID
Stream processing of CryoElectron Microscopy images at the acquisition site
- D. Marchán
- A. García-Mena
- P. Conesa
- Francisco Javier Chichón García
- R. Arranz
- Y. Fonseca-Reyna
- L. del Caño
- I. Sánchez-López
- M. Iceta
- Jose Maria Carazo Garcia
- Carlos Oscar S. Sorzano
Instruct Biennial Structural Biology Conference - 2022
- ORCID
Evolutionary genomics of SARS-CoV-2: keys for viral success (Conf. Invitada: S2.2 2)
- Miguel Álvarez-Herrera
- Jose Maria Carazo Garcia
- Comas I
- Mireia Coscolla
- Santiago F. Elena
- Clara Francés-Gómez
- Maria Luisa Franco
- Daniel García Rasines
- Ron Geller
- Carmen Gil
- Fernando González-Candelas
- Julia Hillung
- José Luis Llácer
- Marina, A.
- María Carmen Marques
- Roi Naveiro Flores
- David Rios Insua
- Simón Rodríguez Santana
- Paula Ruiz-Rodriguez
- Carlos Óscar S. Sorzano
- Eugenia Ulzurum
- Marçal Vilar
44º Congreso de la Sebbm - 2022
- ORCID
Evolutionary genomics of SARS-CoV-2: key for viral success
- Álvarez-Herrera, M.
- Jose Maria Carazo Garcia
- Comas I
- Coscollà, M.
- Santiago F. Elena
- Francés-Gómez, C.
- Franco, M.L.
- García Rasines, D.
- Geller, R.
- Carmen Gil
- Fernando Gonzalez-Candelas
- Hillung, J.
- José Luis Llácer
- Marina, A.
- Marqués, M.C.
- Naveiro Flores, R.
- Ríos, D.
- Rodríguez Santana, S.
- Paula Ruiz-Rodriguez
- Carlos Oscar S. Sorzano
- Ulzurum, E.
- Vidal, M.
44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022
- ORCID
Caracterización estructural de la proteína mayoritaria de viroplasma P9-1 del virus del mal de Río Cuarto
- Gabriela Llauger
- Roberto Melero
- Demian Monti
- Gabriela Sycz
- Cristina Huck-Iriart
- María L. Cerutti
- Sebastian Klinke
- Rocío Arranz
- Yann G.Sterckx
- Vcitoria Alonso
- Sofia Maite Arellano
- Jose Maria Carazo Garcia
- FernandoA.Goldbaum
- Mariana del VAs
- Lisandro H. Otero
Xiii Congreso Argentino de Virología 2021 - 2021
- ORCID
FSC-Q: A method for quality analysis of cryoEM-derived models
- Erney Ramírez-Aportela
- David Maluenda Niubó
- Fonseca, Yunior C.
- Pablo Conesa Mingo
- Roberto Marabini
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
This author has no patents.
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES - 10/08/2023
- JCR Impact Factor: 4.9 (2023)
- CiteScore: 7.8 (2022)
- SJR: 1.154 (2022
- SNIP: 1.263 (2022
- JCR 5-year Impact Factor: 5.6
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- JCR Impact Factor: 6.7 (2022)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 6.7
- JCR Categories: VIROLOGY
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- JCR Impact Factor: 7.464 (2021)
- CiteScore: 10.5 (2021)
- SJR: 2.596 (2021
- SNIP: 1.618 (2021
- JCR 5-year Impact Factor: 7.913
- JCR Categories: VIROLOGY
- Scopus
- ORCID
- Web of Science
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- JCR Impact Factor: 4.799 (2021)
- CiteScore: 5.8 (2020)
- SJR: 0.859 (2020
- SNIP: 0.995 (2020
- JCR 5-year Impact Factor: 3.907
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- Scopus
- ORCID
- Web of Science
h index
Scopus: 52
Web of Science: 54
i10 index
Scopus: 178
Web of Science: 192
Author profiles
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Research projects at UAL
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Acronym 99109Since: June 2, 1999Until: June 2, 2000Funded by: Ministerio de Asuntos ExterioresFunding / grant amount: 19,232.39 EURRole: Investigador