Marabini Ruiz, Roberto Author
A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis
- Fernández-Giménez E.
- Martínez M.M.
- Marabini R.
- Strelak D.
- Sánchez-García R.
- Carazo J.M.
- Sorzano C.O.S.
Journal of Structural Biology - 1/12/2023
- CiteScore: 6.1 (2022)
- SJR: 1.582 (2022
- SNIP: 0.773 (2022
- Scopus
- ORCID
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs
- Abrishami, V.
- Zaldivar-Peraza, A.
- de la Rosa-Trevin, J. M.
- Vargas, J.
- Oton, J.
- Marabini, R.
- Shkolnisky, Y.
- Carazo, J. M.
- Sorzano, C. O. S.
BIOINFORMATICS - 1/10/2013
10.1093/bioinformatics/btt429 View source
- JCR Quartile: Q2 (2013)
- SJR Quartile: Q1
- JCR Impact Factor: 4.621 (2013)
- Category normalized Impact: 1.846 (2013)
- CiteScore: 9.9 (2020)
- SJR: 4.341 (2013
- SNIP: 1.712 (2013
- JCR 5-year Impact Factor: 6.968
- JCR Categories: MATHEMATICAL & COMPUTATIONAL BIOLOGY
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- Scopus
- ORCID
- Web of Science
A review of resolution measures and related aspects in 3D Electron Microscopy.
- Sorzano CO
- Vargas J
- Otón J
- Abrishami V
- de la Rosa-Trevín JM
- Gómez-Blanco J
- Vilas JL
- Marabini R
- Carazo JM
Progress in Biophysics and Molecular Biology - 1/03/2017
10.1016/j.pbiomolbio.2016.09.005 View source
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 3.427 (2022)
- Category normalized Impact: 0.501 (2017)
- CiteScore: 5.8 (2020)
- SJR: 1.446 (2017
- SNIP: 1.236 (2017
- JCR 5-year Impact Factor: 3.125
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Biophysics (Q1); Molecular Biology (Q2)
- Scopus
- ORCID
- Web of Science
A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy
- Sorzano, C.O.S.
- Vargas, J.
- de la Rosa-Trevín, J.M.
- Otón, J.
- Álvarez-Cabrera, A.L.
- Abrishami, V.
- Sesmero, E.
- Marabini, R.
- Carazo, J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/03/2015
10.1016/j.jsb.2015.01.009 View source
- JCR Quartile: Q2 (2015)
- SJR Quartile: Q1
- JCR Impact Factor: 2.57 (2022)
- Category normalized Impact: 0.818 (2015)
- CiteScore: 5.5 (2020)
- SJR: 3.448 (2015
- SNIP: 1.109 (2015
- JCR 5-year Impact Factor: 3.067
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
- Sorzano C.
- Vargas J.
- Otón J.
- De La Rosa-Trevín J.
- Vilas J.
- Kazemi M.
- Melero R.
- Del Caño L.
- Cuenca J.
- Conesa P.
- Gómez-Blanco J.
- Marabini R.
- Carazo J.
Biomed Research International - 1/1/2017
- JCR Quartile: Q2 (2017)
- SJR Quartile: Q1
- JCR Impact Factor: 2.583 (2022)
- Category normalized Impact: 0.428 (2017)
- CiteScore: 4.1 (2020)
- SJR: 0.935 (2017
- SNIP: 1.034 (2017
- JCR 5-year Impact Factor: 2.931
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Medicine (miscellaneous) (Q1); Immunology and Microbiology (miscellaneous) (Q2)
- Scopus
- ORCID
- Web of Science
A theoretical model for EM-ML reconstruction algorithms applied to rotating PET scanners
- Iriarte, A.
- Sorzano, C. O. S.
- Carazo, J. M.
- Rubio, J. L.
- Marabini, R.
Physics in Medicine and Biology - 7/04/2009
10.1088/0031-9155/54/7/004 View source
- SJR Quartile: Q1
- JCR Impact Factor: 2.781 (2009)
- CiteScore: 5.9 (2020)
- SJR: 1.543 (2009
- SNIP: 1.941 (2009
- JCR 5-year Impact Factor: 2.99
- JCR Categories: RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
- SJR Categories: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)
- Scopus
- ORCID
- Web of Science
Automatic classification of biological particles from electron-microscopy images using conventional and genetic-algorithm optimized learning vector quantization
- Merelo, J.J.
- Prieto, A.
- Morán, F.
- Marabini, R.
- Carazo, J.M.
Neural Processing Letters - 1/08/1998
10.1023/a:1009617113191 View source
- CiteScore: 4.2 (2020)
- Scopus
- ORCID
- Web of Science
Automatic local resolution-based sharpening of cryo-EM maps
- Ramírez-Aportela E.
- Vilas J.
- Glukhova A.
- Melero R.
- Conesa P.
- Martínez M.
- Maluenda D.
- Mota J.
- Jiménez A.
- Vargas J.
- Marabini R.
- Sexton P.
- Carazo J.
- Sorzano C.
BIOINFORMATICS - 1/2/2020
- JCR Impact Factor: 6.937 (2020)
- CiteScore: 9.9 (2020)
- SJR: 3.599 (2020
- SNIP: 2.056 (2020
- JCR 5-year Impact Factor: 8.47
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- Scopus
- ORCID
- Web of Science
Automatic particle selection from electron micrographs using machine learning techniques
- Sorzano, C.O.S.
- Recarte, E.
- Alcorlo, M.
- Bilbao-Castro, J.R.
- San-Martín, C.
- Marabini, R.
- Carazo, J.M.
Journal of Structural Biology - 1/09/2009
10.1016/j.jsb.2009.06.011 View source
- JCR Quartile: Q2 (2009)
- SJR Quartile: Q1
- JCR Impact Factor: 3.673 (2009)
- Category normalized Impact: 0.804 (2009)
- CiteScore: 5.5 (2020)
- SJR: 3.006 (2009
- SNIP: 1.22 (2009
- JCR 5-year Impact Factor: 3.925
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Blind estimation of DED camera gain in Electron Microscopy
- Sorzano C.
- Fernández-Giménez E.
- Peredo-Robinson V.
- Vargas J.
- Majtner T.
- Caffarena G.
- Otón J.
- Vilas J.
- de la Rosa-Trevín J.
- Melero R.
- Gómez-Blanco J.
- Cuenca J.
- del Cano L.
- Conesa P.
- Marabini R.
- Carazo J.
Journal of Structural Biology - 1/08/2018
- SJR Quartile: Q1
- JCR Impact Factor: 3.754 (2018)
- CiteScore: 5.5 (2020)
- SJR: 5.254 (2018
- SNIP: 1.207 (2018
- JCR 5-year Impact Factor: 3.522
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 View source
- SJR Categories: Computer Vision and Pattern Recognition
- Scopus
- ORCID
- Web of Science
Consistent and elastic registration of histological sections using vector-spline regularization
- Arganda-Carreras, Ignacio
- Sorzano, Carlos O. S.
- Marabini, Roberto
- Carazo, Jose Maria
- Ortiz-de-Solorzano, Carlos
- Kybic, Jan
- Beichel, RR
COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006
10.1007/11889762_8 View source
- CiteScore: 1.8 (2020)
- SJR: 0.317 (2006
- SNIP: 0.679 (2006
- Scopus
- ORCID
- Web of Science
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009
10.1109/wisp.2009.5286563 View source
- SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing
- Scopus
- ORCID
- Web of Science
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1.2 (2020)
- Scopus
- ORCID
This author has no patents.
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins
- Roberto Marabini
- Gabriela N. Condezo
- Josué Gómez-Blanco
- Carmen San Martín
Science Advances - 24/07/2020
- JCR Impact Factor: 14.143 (2020)
- JCR 5-year Impact Factor: 16.45
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- ORCID
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
h index
Scopus: 23
Web of Science: 27
i10 index
Scopus: 57
Web of Science: 69
Author profiles
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Acronym P10-TIC-06002Since: March 15, 2011Until: March 15, 2014Funded by: JUNTAFunding / grant amount: 105,730.00 EURRole: Investigador