Marabini Ruiz, Roberto Author
Xmipp 3.0: An improved software suite for image processing in electron microscopy
- de la Rosa-Trevin, J. M.
- Oton, J.
- Marabini, R.
- Zaldivar, A.
- Vargas, J.
- Carazo, J. M.
- Sorzano, C. O. S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/11/2013
10.1016/j.jsb.2013.09.015 View source
- JCR Quartile: Q2 (2013)
- SJR Quartile: Q1
- JCR Impact Factor: 3.369 (2013)
- Category normalized Impact: 5.507 (2013)
- CiteScore: 5.5 (2020)
- SJR: 2.596 (2013
- SNIP: 1.256 (2013
- JCR 5-year Impact Factor: 3.407
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs
- Abrishami, V.
- Zaldivar-Peraza, A.
- de la Rosa-Trevin, J. M.
- Vargas, J.
- Oton, J.
- Marabini, R.
- Shkolnisky, Y.
- Carazo, J. M.
- Sorzano, C. O. S.
BIOINFORMATICS - 1/10/2013
10.1093/bioinformatics/btt429 View source
- JCR Quartile: Q2 (2013)
- SJR Quartile: Q1
- JCR Impact Factor: 4.621 (2013)
- Category normalized Impact: 1.846 (2013)
- CiteScore: 9.9 (2020)
- SJR: 4.341 (2013
- SNIP: 1.712 (2013
- JCR 5-year Impact Factor: 6.968
- JCR Categories: MATHEMATICAL & COMPUTATIONAL BIOLOGY
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- Scopus
- ORCID
- Web of Science
Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques
- Vargas, J.
- Abrishami, V.
- Marabini, R.
- de la Rosa-Trevín, J.M.
- Zaldivar, A.
- Carazo, J.M.
- Sorzano, C.O.S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/09/2013
10.1016/j.jsb.2013.07.015 View source
- JCR Quartile: Q2 (2013)
- SJR Quartile: Q1
- JCR Impact Factor: 3.369 (2013)
- Category normalized Impact: 0.672 (2013)
- CiteScore: 5.5 (2020)
- SJR: 2.596 (2013
- SNIP: 1.256 (2013
- JCR 5-year Impact Factor: 3.407
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy
- Marabini, R.
- MacIas, J.R.
- Vargas, J.
- Quintana, A.
- Sorzano, C.O.S.
- Carazo, J.M.
Acta Crystallographica Section D: Biological Crystallography - 1/05/2013
10.1107/s0907444913007038 View source
- JCR Impact Factor: 7.232 (2013)
- CiteScore: 5.5 (2015)
- JCR 5-year Impact Factor: 9.416
- JCR Categories: CRYSTALLOGRAPHY
- Scopus
- ORCID
- Web of Science
FASTDEF: Fast defocus and astigmatism estimation for high-throughput transmission electron microscopy
- Vargas, J.
- Oton, J.
- Marabini, R.
- Jonic, S.
- de la Rosa-Trevin, J. M.
- Carazo, J. M.
- Sorzano, C. O. S.
JOURNAL OF STRUCTURAL BIOLOGY - 1/02/2013
10.1016/j.jsb.2012.12.006 View source
- JCR Quartile: Q2 (2013)
- SJR Quartile: Q1
- JCR Impact Factor: 3.369 (2013)
- Category normalized Impact: 0.645 (2013)
- CiteScore: 5.5 (2020)
- SJR: 2.596 (2013
- SNIP: 1.256 (2013
- JCR 5-year Impact Factor: 3.407
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Image processing for Cellular tomography using soft X-rays
- Sorzano, C. O. S.
- Oton, J.
- Cuenca, J.
- Zaldivar-Perez, A.
- Caffarena, G.
- Sanchez-Jimenez, J.
- Messaoudi, C.
- Marco, S.
- Marabini, R.
- Carazo, J. M.
- IEEE
2012 9th Ieee International Symposium on Biomedical Imaging (Isbi) - 2012
- ORCID
- Web of Science
Epitope insertion at the N-terminal molecular switch of the rabbit hemorrhagic disease virus T=3 capsid protein leads to larger T=4 capsids
- Luque, D.
- González, J.M.
- Gómez-Blanco, J.
- Marabini, R.
- Chichón, J.
- Men, I.
- Angulo, I.
- Carrascosa, J.L.
- Verdaguer, N.
- Trus, B.L.
- Bárcen, J.
- Castón, J.R.
Journal of Virology - 1/06/2012
10.1128/jvi.07050-11 View source
- JCR Quartile: Q2 (2012)
- SJR Quartile: Q1
- JCR Impact Factor: 5.076 (2012)
- Category normalized Impact: 0.586 (2012)
- CiteScore: 8.9 (2020)
- SJR: 3.19 (2012
- SNIP: 1.218 (2012
- JCR 5-year Impact Factor: 4.893
- JCR Categories: VIROLOGY
- SJR Categories: Immunology (Q1); Insect Science (Q1); Microbiology (Q1); Virology (Q1)
- Scopus
- ORCID
- Web of Science
Image formation in cellular X-ray microscopy
- Oton, Joaquin
- Sorzano, C. O. S.
- Pereiro, Eva
- Cuenca-Alba, Jesus
- Navarro, Rafael
- Carazo, Jose M.
- Marabini, Roberto
Journal of Structural Biology - 1/04/2012
10.1016/j.jsb.2012.01.006 View source
- JCR Quartile: Q2 (2012)
- SJR Quartile: Q1
- JCR Impact Factor: 3.361 (2012)
- Category normalized Impact: 0.521 (2012)
- CiteScore: 5.5 (2020)
- SJR: 2.268 (2012
- SNIP: 1.235 (2012
- JCR 5-year Impact Factor: 3.549
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Non-rigid consistent registration of 2D image sequences
- Arganda-Carreras, I.
- Sorzano, C. O. S.
- Thevenaz, P.
- Munoz-Barrutia, A.
- Kybic, J.
- Marabini, R.
- Carazo, J. M.
- Ortiz-de Solorzano, C.
Physics in Medicine and Biology - 21/10/2010
10.1088/0031-9155/55/20/012 View source
- SJR Quartile: Q1
- JCR Impact Factor: 3.057 (2010)
- CiteScore: 5.9 (2020)
- SJR: 1.888 (2010
- SNIP: 1.799 (2010
- JCR 5-year Impact Factor: 3.129
- JCR Categories: ENGINEERING, BIOMEDICAL
- SJR Categories: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)
- Scopus
- ORCID
- Web of Science
A clustering approach to multireference alignment of single-particle projections in electron microscopy
- Sorzano, C. O. S.
- Bilbao-Castro, J. R.
- Shkolnisky, Y.
- Alcorlo, M.
- Melero, R.
- Caffarena-Fernandez, G.
- Li, M.
- Xu, G.
- Marabini, R.
- Carazo, J. M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/08/2010
10.1016/j.jsb.2010.03.011 View source
- JCR Quartile: Q2 (2010)
- SJR Quartile: Q1
- JCR Impact Factor: 3.5 (2010)
- Category normalized Impact: 3.397 (2010)
- CiteScore: 5.5 (2020)
- SJR: 2.631 (2010
- SNIP: 1.091 (2010
- JCR 5-year Impact Factor: 4.152
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 View source
- SJR Categories: Computer Vision and Pattern Recognition
- Scopus
- ORCID
- Web of Science
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009
10.1109/wisp.2009.5286563 View source
- SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing
- Scopus
- ORCID
- Web of Science
Consistent and elastic registration of histological sections using vector-spline regularization
- Arganda-Carreras, Ignacio
- Sorzano, Carlos O. S.
- Marabini, Roberto
- Carazo, Jose Maria
- Ortiz-de-Solorzano, Carlos
- Kybic, Jan
- Beichel, RR
COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006
10.1007/11889762_8 View source
- CiteScore: 1.8 (2020)
- SJR: 0.317 (2006
- SNIP: 0.679 (2006
- Scopus
- ORCID
- Web of Science
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1.2 (2020)
- Scopus
- ORCID
This author has no patents.
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins
- Roberto Marabini
- Gabriela N. Condezo
- Josué Gómez-Blanco
- Carmen San Martín
Science Advances - 24/07/2020
- JCR Impact Factor: 14.143 (2020)
- JCR 5-year Impact Factor: 16.45
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- ORCID
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
h index
Scopus: 23
Web of Science: 27
i10 index
Scopus: 57
Web of Science: 69
Author profiles
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Acronym P10-TIC-06002Since: March 15, 2011Until: March 15, 2014Funded by: JUNTAFunding / grant amount: 105,730.00 EURRole: Investigador