Marabini Ruiz, Roberto Author
Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs
- Bilbao-Castro J.
- Marabini R.
- Sorzano C.
- García I.
- Carazo J.
- Fernández J.
Journal of Structural Biology - 1/01/2009
- JCR Quartile: Q2 (2009)
- SJR Quartile: Q1
- JCR Impact Factor: 3.673 (2009)
- Category normalized Impact: 0.339 (2009)
- CiteScore: 5.5 (2020)
- SJR: 3.006 (2009
- SNIP: 1.22 (2009
- JCR 5-year Impact Factor: 3.925
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
3D Cryo-Electron Reconstruction of BmrA, a Bacterial Multidrug ABC Transporter in an Inward-Facing Conformation and in a Lipidic Environment
- Fribourg, Pierre Frederic
- Chami, Mohamed
- Sorzano, Carlos Oscar S.
- Gubellini, Francesca
- Marabini, Roberto
- Marco, Sergio
- Jault, Jean-Michel
- Levy, Daniel
JOURNAL OF MOLECULAR BIOLOGY - 15/05/2014
10.1016/j.jmb.2014.03.002 View source
- JCR Quartile: Q2 (2014)
- SJR Quartile: Q1
- JCR Impact Factor: 4.333 (2022)
- Category normalized Impact: 0.657 (2014)
- CiteScore: 8.5 (2020)
- SJR: 2.823 (2014
- SNIP: 1.107 (2014
- JCR 5-year Impact Factor: 3.702
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Maximum-likelihood multi-reference refinement for electron microscopy images
- Scheres, SHW
- Valle, M
- Nunez, R
- Sorzano, COS
- Marabini, R
- Herman, GT
- Carazo, JM
JOURNAL OF MOLECULAR BIOLOGY - 22/04/2005
10.1016/j.jmb.2005.02.031 View source
- JCR Quartile: Q2 (2005)
- SJR Quartile: Q1
- JCR Impact Factor: 5.229 (2022)
- Category normalized Impact: 3.14 (2005)
- CiteScore: 8.5 (2020)
- SJR: 4.147 (2005
- SNIP: 1.414 (2005
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Structure and Uncoating of Immature Adenovirus
- Perez-Berna, Ana J.
- Marabini, Roberto
- Scheres, Sjors H. W.
- Menendez-Conejero, Rosa
- Dmitriev, Igor P.
- Curiel, David T.
- Mangel, Walter F.
- Flint, S. Jane
- San Martin, Carmen
Journal of Molecular Biology - 18/09/2009
10.1016/j.jmb.2009.06.057 View source
- SJR Quartile: Q1
- JCR Impact Factor: 3.871 (2009)
- CiteScore: 8.5 (2020)
- SJR: 3.512 (2009
- SNIP: 1.176 (2009
- JCR 5-year Impact Factor: 4.303
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Localization of the N-Terminus of Minor Coat Protein IIIa in the Adenovirus Capsid
- San Martin, Carmen
- Glasgow, Joel N.
- Borovjagin, Anton
- Beatty, Matthew S.
- Kashentseva, Elena A.
- Curiel, David T.
- Marabini, Roberto
- Dmitriev, Igor P.
Journal of Molecular Biology - 21/11/2008
10.1016/j.jmb.2008.08.054 View source
- SJR Quartile: Q1
- JCR Impact Factor: 4.146 (2022)
- Category normalized Impact: 0.564 (2008)
- CiteScore: 8.5 (2020)
- SJR: 3.683 (2008
- SNIP: 1.182 (2008
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Integration of Cryo-EM Model Building Software in Scipion
- Martínez M.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Melero R.
- Cuervo A.
- Conesa P.
- Del Caño L.
- Fonseca Y.C.
- Sánchez-García R.
- Strelak D.
- Conesa J.J.
- Fernández-Giménez E.
- de Isidro F.
- Sorzano C.O.S.
- Carazo J.M.
- Marabini R.
Journal of Chemical Information and Modeling - 26/5/2020
- JCR Impact Factor: 4.956 (2020)
- CiteScore: 6.4 (2020)
- SJR: 1.24 (2020
- SNIP: 1.295 (2020
- JCR 5-year Impact Factor: 5.39
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- Scopus
- ORCID
- Web of Science
Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures
- Melero R.
- Sorzano C.O.S.
- Foster B.
- Vilas J.L.
- Martínez M.
- Marabini R.
- Ramiacute;rez-Aportela E.
- Sanchez-Garcia R.
- Herreros D.
- Del Caño L.
- Losana P.
- Fonseca-Reyna Y.C.
- Conesa P.
- Wrapp D.
- Chacon P.
- McLellan J.S.
- Tagare H.D.
- Carazo J.M.
IUCrJ - 1/11/2020
- JCR Impact Factor: 4.769 (2020)
- CiteScore: 8.1 (2020)
- SJR: 2.832 (2020
- SNIP: 1.565 (2020
- JCR 5-year Impact Factor: 5.75
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- Scopus
- ORCID
- Web of Science
Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations
- Zubelli, J.P.
- Marabini, R.
- Sorzano, C.O.S.
- Herman, G.T.
INVERSE PROBLEMS - 1/08/2003
10.1088/0266-5611/19/4/310 View source
- SJR Quartile: Q1
- CiteScore: 3.7 (2020)
- SJR: 0.796 (2003
- SNIP: 1.378 (2003
- SJR Categories: Theoretical Computer Science (Q1); Applied Mathematics (Q2); Computer Science Applications (Q2); Signal Processing (Q2); Mathematical Physics (Q3)
- Scopus
- ORCID
- Web of Science
The soft x-ray transform
- Klukowska, J.
- Herman, G.T.
- Otón, J.
- Marabini, R.
- Carazo, J.-M.
Inverse Problems - 1/12/2014
10.1088/0266-5611/30/12/125015 View source
- JCR Quartile: Q2 (2014)
- SJR Quartile: Q1
- JCR Impact Factor: 1.323 (2022)
- Category normalized Impact: 0.232 (2014)
- CiteScore: 3.7 (2020)
- SJR: 1.252 (2014
- SNIP: 1.397 (2014
- JCR 5-year Impact Factor: 1.95
- JCR Categories: PHYSICS, MATHEMATICAL
- SJR Categories: Applied Mathematics (Q1); Computer Science Applications (Q1); Mathematical Physics (Q1); Signal Processing (Q1); Theoretical Computer Science (Q1)
- Scopus
- ORCID
- Web of Science
Image processing approaches to biological three-dimensional electron microscopy
- Herman, G.T.
- Marabini, R.
- Carazo, J.-M.
- Garduño, E.
- Lewitt, R.M.
- Matej, S.
International Journal of Imaging Systems and Technology - 1/1/2000
10.1002/(sici)1098-1098(2000)11:1<12::aid-ima3>3.0.co;2-n
- SJR Quartile: Q2
- CiteScore: 2.8 (2020)
- SJR: 0.29 (2000
- SNIP: 0.587 (2000
- SJR Categories: Electrical and Electronic Engineering (Q2); Computer Vision and Pattern Recognition (Q3); Electronic, Optical and Magnetic Materials (Q3); Software (Q3)
- Scopus
- ORCID
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009
10.1109/wisp.2009.5286563 View source
- SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing
- Scopus
- ORCID
- Web of Science
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1.2 (2020)
- Scopus
- ORCID
Consistent and elastic registration of histological sections using vector-spline regularization
- Arganda-Carreras, Ignacio
- Sorzano, Carlos O. S.
- Marabini, Roberto
- Carazo, Jose Maria
- Ortiz-de-Solorzano, Carlos
- Kybic, Jan
- Beichel, RR
COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006
10.1007/11889762_8 View source
- CiteScore: 1.8 (2020)
- SJR: 0.317 (2006
- SNIP: 0.679 (2006
- Scopus
- ORCID
- Web of Science
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 View source
- SJR Categories: Computer Vision and Pattern Recognition
- Scopus
- ORCID
- Web of Science
This author has no patents.
Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins
- Roberto Marabini
- Gabriela N. Condezo
- Josué Gómez-Blanco
- Carmen San Martín
Science Advances - 24/07/2020
- JCR Impact Factor: 14.143 (2020)
- JCR 5-year Impact Factor: 16.45
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- ORCID
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
h index
Scopus: 23
Web of Science: 27
i10 index
Scopus: 57
Web of Science: 69
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Acronym P10-TIC-06002Since: March 15, 2011Until: March 15, 2014Funded by: JUNTAFunding / grant amount: 105,730.00 EURRole: Investigador