Marabini Ruiz, Roberto Author
MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps
- Vilas J.
- Gómez-Blanco J.
- Conesa P.
- Melero R.
- Miguel de la Rosa-Trevín J.
- Otón J.
- Cuenca J.
- Marabini R.
- Carazo J.
- Vargas J.
- Sorzano C.
Structure - 6/2/2018
- SJR Quartile: Q1
- JCR Impact Factor: 4.576 (null)
- CiteScore: 9 (2020)
- SJR: 3.574 (2018
- SNIP: 1.244 (2018
- JCR 5-year Impact Factor: 4.831
- JCR Categories: BIOPHYSICS
- SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Validation of electron microscopy initial models via small angle X-ray scattering curves
- Jiménez A.
- Jonic S.
- Majtner T.
- Otón J.
- Vilas J.
- Maluenda D.
- Mota J.
- Ramírez-Aportela E.
- Martínez M.
- Rancel Y.
- Segura J.
- Sánchez-García R.
- Melero R.
- Del Cano L.
- Conesa P.
- Skjaerven L.
- Marabini R.
- Carazo J.
- Sorzano C.
Bioinformatics - 15/07/2019
- SJR Quartile: Q1
- JCR Impact Factor: 5.61 (2019)
- CiteScore: 9.9 (2020)
- SJR: 3.567 (2019
- SNIP: 1.864 (2019
- JCR 5-year Impact Factor: 9.853
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)
- Scopus
- ORCID
- Web of Science
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy
- Sorzano C.
- Jiménez A.
- Mota J.
- Vilas J.
- Maluenda D.
- Martínez M.
- Ramírez-Aportela E.
- Majtner T.
- Segura J.
- Sánchez-García R.
- Rancel Y.
- Del Caño L.
- Conesa P.
- Melero R.
- Jonic S.
- Vargas J.
- Cazals F.
- Freyberg Z.
- Krieger J.
- Bahar I.
- Marabini R.
- Carazo J.
Acta Crystallographica Section F-Structural Biology Communications - 1/1/2019
- JCR Quartile: Q2 (2019)
- SJR Quartile: Q2
- JCR Impact Factor: 0.968 (2019)
- Category normalized Impact: 3.116 (2019)
- JCR 5-year Impact Factor: 0.887
- JCR Categories: BIOCHEMICAL RESEARCH METHODS
- SJR Categories: Biophysics (Q2); Condensed Matter Physics (Q2); Medicine (miscellaneous) (Q2); Biochemistry (Q3); Genetics (Q3); Structural Biology (Q3)
- Scopus
- ORCID
- Web of Science
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion
- Maluenda D.
- Majtner T.
- Horvath P.
- Vilas J.
- Jiménez-Moreno A.
- Mota J.
- Ramírez-Aportela E.
- Sánchez-García R.
- Conesa P.
- Del Caño L.
- Rancel Y.
- Fonseca Y.
- Martínez M.
- Sharov G.
- García C.
- Strelak D.
- Melero R.
- Marabini R.
- Carazo J.
- Sorzano C.
Acta Crystallographica Section D-Structural Biology - 1/10/2019
- JCR Quartile: Q2 (2019)
- SJR Quartile: Q1
- JCR Impact Factor: 5.266 (2019)
- Category normalized Impact: 0.902 (2019)
- CiteScore: 6.6 (2019)
- SJR: 3.906 (2019
- SNIP: 1.429 (2019
- JCR 5-year Impact Factor: 3.181
- JCR Categories: BIOPHYSICS
- SJR Categories: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening
- Vilas J.L.
- Vargas J.
- Martinez M.
- Ramirez-Aportela E.
- Melero R.
- Jimenez-Moreno A.
- Garduño E.
- Conesa P.
- Marabini R.
- Maluenda D.
- Carazo J.M.
- Sorzano C.O.S.
Journal of Structural Biology - 1/03/2020
- SJR Quartile: Q2
- JCR Impact Factor: 2.867 (2020)
- CiteScore: 5.5 (2020)
- SJR: 2.564 (2020
- SNIP: 1.018 (2020
- JCR 5-year Impact Factor: 4.474
- JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
- SJR Categories: Structural Biology (Q2)
- Scopus
- ORCID
- Web of Science
Measurement of local resolution in electron tomography
- Vilas J.
- Oton J.
- Messaoudi C.
- Melero R.
- Conesa P.
- Ramirez-Aportela E.
- Mota J.
- Martinez M.
- Jimenez A.
- Marabini R.
- Carazo J.
- Vargas J.
- Sorzano C.
Journal of Structural Biology: X - 1/1/2020
- JCR Quartile: Q2 (2020)
- SJR Quartile: Q4
- JCR Impact Factor: 2.867 (2022)
- Category normalized Impact: 0.492 (2020)
- JCR 5-year Impact Factor: 4.474
- JCR Categories: CELL BIOLOGY
- SJR Categories: Structural Biology (Q4)
- Scopus
- ORCID
- Web of Science
Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures
- Melero R.
- Sorzano C.O.S.
- Foster B.
- Vilas J.L.
- Martínez M.
- Marabini R.
- Ramiacute;rez-Aportela E.
- Sanchez-Garcia R.
- Herreros D.
- Del Caño L.
- Losana P.
- Fonseca-Reyna Y.C.
- Conesa P.
- Wrapp D.
- Chacon P.
- McLellan J.S.
- Tagare H.D.
- Carazo J.M.
IUCrJ - 1/11/2020
- JCR Impact Factor: 4.769 (2020)
- CiteScore: 8.1 (2020)
- SJR: 2.832 (2020
- SNIP: 1.565 (2020
- JCR 5-year Impact Factor: 5.75
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- Scopus
- ORCID
- Web of Science
Automatic local resolution-based sharpening of cryo-EM maps
- Ramírez-Aportela E.
- Vilas J.
- Glukhova A.
- Melero R.
- Conesa P.
- Martínez M.
- Maluenda D.
- Mota J.
- Jiménez A.
- Vargas J.
- Marabini R.
- Sexton P.
- Carazo J.
- Sorzano C.
BIOINFORMATICS - 1/2/2020
- JCR Impact Factor: 6.937 (2020)
- CiteScore: 9.9 (2020)
- SJR: 3.599 (2020
- SNIP: 2.056 (2020
- JCR 5-year Impact Factor: 8.47
- JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
- Scopus
- ORCID
- Web of Science
Integration of Cryo-EM Model Building Software in Scipion
- Martínez M.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Melero R.
- Cuervo A.
- Conesa P.
- Del Caño L.
- Fonseca Y.C.
- Sánchez-García R.
- Strelak D.
- Conesa J.J.
- Fernández-Giménez E.
- de Isidro F.
- Sorzano C.O.S.
- Carazo J.M.
- Marabini R.
Journal of Chemical Information and Modeling - 26/5/2020
- JCR Impact Factor: 4.956 (2020)
- CiteScore: 6.4 (2020)
- SJR: 1.24 (2020
- SNIP: 1.295 (2020
- JCR 5-year Impact Factor: 5.39
- JCR Categories: CHEMISTRY, MULTIDISCIPLINARY
- Scopus
- ORCID
- Web of Science
Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses
- Marta Pérez-Illana
- Marta Martínez
- Gabriela N. Condezo
- Mercedes Hernando-Pérez
- Casandra Mangroo
- Martha Brown
- Roberto Marabini
- Carmen San Martín
Science Advances - 26/02/2021
- JCR Impact Factor: 14.98 (2021)
- CiteScore: 16.6 (2020)
- SJR: 5.928 (2020
- SNIP: 3.445 (2020
- JCR 5-year Impact Factor: 16.9
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- Scopus
- ORCID
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 View source
- CiteScore: 1.8 (2020)
- Scopus
- ORCID
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- SJR Quartile: Q3
- CiteScore: 2.2 (2020)
- SJR: 0.751 (2013
- SNIP: 0.362 (2013
- SJR Categories: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.156 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- JCR Quartile: Q2 (2014)
- Category normalized Impact: 0.312 (2014)
- CiteScore: 0.8 (2020)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- JCR Quartile: Q2 (2021)
- Category normalized Impact: 0.595 (2021)
- CiteScore: 2.2 (2020)
- SJR: 0.711 (2020
- SNIP: 0.57 (2020
- Scopus
- ORCID
- Web of Science
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1.2 (2020)
- Scopus
- ORCID
Consistent and elastic registration of histological sections using vector-spline regularization
- Arganda-Carreras, Ignacio
- Sorzano, Carlos O. S.
- Marabini, Roberto
- Carazo, Jose Maria
- Ortiz-de-Solorzano, Carlos
- Kybic, Jan
- Beichel, RR
COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006
10.1007/11889762_8 View source
- CiteScore: 1.8 (2020)
- SJR: 0.317 (2006
- SNIP: 0.679 (2006
- Scopus
- ORCID
- Web of Science
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009
10.1109/wisp.2009.5286563 View source
- SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing
- Scopus
- ORCID
- Web of Science
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014
10.1109/icip.2014.7025420 View source
- SJR Categories: Computer Vision and Pattern Recognition
- Scopus
- ORCID
- Web of Science
This author has no patents.
Biological structure determination by EM is well suited to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/06/2004
- JCR Quartile: Q2 (2004)
- SJR Quartile: Q2
- JCR Impact Factor: 0.854 (2022)
- CiteScore: 2.1 (2020)
- SJR: 0.556 (2004
- SNIP: 1.19 (2004
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
On the suitability of biological structure determination by electron microscopy to grid computing
- Fernandez J.
- Bilbao-Castro J.
- Marabini R.
- Carazo J.
- Garcia I.
New Generation Computing - 1/03/2005
- JCR Quartile: Q3 (2005)
- SJR Quartile: Q2
- JCR Impact Factor: 0.5 (2022)
- Category normalized Impact: 0.442 (2005)
- CiteScore: 2.1 (2020)
- SJR: 0.6 (2005
- SNIP: 1.719 (2005
- SJR Categories: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
- Web of Science
Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins
- Roberto Marabini
- Gabriela N. Condezo
- Josué Gómez-Blanco
- Carmen San Martín
Science Advances - 24/07/2020
- JCR Impact Factor: 14.143 (2020)
- JCR 5-year Impact Factor: 16.45
- JCR Categories: MULTIDISCIPLINARY SCIENCES
- ORCID
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- JCR Impact Factor: 3.4 (2022)
- JCR 5-year Impact Factor: 3.4
- JCR Categories: CHEMISTRY, PHYSICAL
h index
Scopus: 23
Web of Science: 27
i10 index
Scopus: 57
Web of Science: 69
Author profiles
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Acronym P10-TIC-06002Since: March 15, 2011Until: March 15, 2014Funded by: JUNTAFunding / grant amount: 105,730.00 EURRole: Investigador