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Marabini Ruiz, Roberto Author

A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis

  • Fernández-Giménez E.
  • Martínez M.M.
  • Marabini R.
  • Strelak D.
  • Sánchez-García R.
  • Carazo J.M.
  • Sorzano C.O.S.
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JOURNAL OF STRUCTURAL BIOLOGY - 1/12/2023

10.1016/j.jsb.2023.108024

Cite count: 1 (Web of Science)
  • JCR Impact Factor: 3 (2023)
  • CiteScore: 6.1 (2022)
  • SJR: 1.582 (2022
  • SNIP: 0.773 (2022
  • JCR 5-year Impact Factor: 2.5
  • JCR Categories: BIOPHYSICS

ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

  • Jiménez de la Morena J.
  • Conesa P.
  • Fonseca Y.C.
  • de Isidro-Gómez F.P.
  • Herreros D.
  • Fernández-Giménez E.
  • Strelak D.
  • Moebel E.
  • Buchholz T.O.
  • Jug F.
  • Martinez-Sanchez A.
  • Harastani M.
  • Jonic S.
  • Conesa J.J.
  • Cuervo A.
  • Losana P.
  • Sánchez I.
  • Iceta M.
  • del Cano L.
  • Gragera M.
  • Melero R.
  • Sharov G.
  • Castaño-Díez D.
  • Koster A.
  • Piccirillo J.G.
  • Vilas J.L.
  • Otón J.
  • Marabini R.
  • Sorzano C.O.S.
  • Carazo J.M.
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JOURNAL OF STRUCTURAL BIOLOGY - 1/9/2022

10.1016/j.jsb.2022.107872

Cite count: 18 (Web of Science)
  • JCR Quartile: Q2 (2022)
  • JCR Impact Factor: 3 (2022)
  • Category normalized Impact: 1.467 (2022)
  • CiteScore: 5.3 (2021)
  • SJR: 1.594 (2021
  • SNIP: 0.842 (2021
  • JCR 5-year Impact Factor: 3.3
  • JCR Categories: BIOPHYSICS

On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Martínez M.
  • Ramírez-Aportela E.
  • Krieger J.
  • Melero R.
  • Cuervo A.
  • Conesa J.
  • Filipovic J.
  • Conesa P.
  • Del Caño L.
  • Fonseca Y.C.
  • Jiménez-de la Morena J.
  • Losana P.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.P.
  • Herreros D.
  • Vilas J.L.
  • Marabini R.
  • Carazo J.M.
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ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY - 1/4/2022

10.1107/s2059798322001978

Cite count: 13 (Web of Science) 2 (Scopus)
  • JCR Quartile: Q2 (2022)
  • JCR Impact Factor: 2.2 (2022)
  • Category normalized Impact: 2.434 (2022)
  • JCR 5-year Impact Factor: 5.7
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY

Image processing tools for the validation of CryoEM maps

  • C. O. S. Sorzano
  • J. L. Vilas
  • E. Ramírez-Aportela
  • J. Krieger
  • D. del Hoyo
  • D. Herreros
  • E. Fernandez-Giménez
  • D. Marchán
  • J. R. Macías
  • I. Sánchez
  • L. del Caño
  • Y. Fonseca-Reyna
  • P. Conesa
  • A. García-Mena
  • J. Burguet
  • J. García Condado
  • J. Méndez García
  • M. Martínez
  • A. Muñoz-Barrutia
  • R. Marabini
  • J. Vargas
  • J. M. Carazo
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FARADAY DISCUSSIONS - 8/11/2022

10.1039/d2fd00059h

Cite count: 2 (Web of Science)
  • JCR Impact Factor: 3.4 (2022)
  • JCR 5-year Impact Factor: 3.4
  • JCR Categories: CHEMISTRY, PHYSICAL

Image processing tools for the validation of CryoEM maps (vol 240, pg 210, 2022)

  • Sorzano C.O.S.
  • Vilas J.L.
  • Ramírez-Aportela E.
  • Krieger J.
  • Del Hoyo D.
  • Herreros D.
  • Fernandez-Giménez E.
  • Marchán D.
  • De Isidro Gómez F.
  • Macías J.R.
  • Sánchez I.
  • Del Caño L.
  • Fonseca-Reyna Y.
  • Conesa P.
  • García-Mena A.
  • Burguet J.
  • García Condado J.
  • Méndez García J.
  • Martínez M.
  • Muñoz-Barrutia A.
  • Marabini R.
  • Vargas J.
  • Carazo J.M.
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FARADAY DISCUSSIONS - 8/11/2022

10.1039/d2fd90074b

Cite count:
  • JCR Impact Factor: 3.4 (2022)
  • JCR 5-year Impact Factor: 3.4
  • JCR Categories: CHEMISTRY, PHYSICAL

Cryo-EM and Single-Particle Analysis with Scipion

  • Jiménez-Moreno A.
  • Del Caño L.
  • Martínez M.
  • Ramírez-Aportela E.
  • Cuervo A.
  • Melero R.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.P.
  • Herreros D.
  • Conesa P.
  • Fonseca Y.
  • Maluenda D.
  • Jiménez de la Morena J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
  • Sorzano C.O.S.
... View more Collapse

JOVE-JOURNAL OF VISUALIZED EXPERIMENTS - 29/5/2021

10.3791/62261

Cite count: 11 (Web of Science) 2 (Scopus)
  • JCR Quartile: Q2 (2021)
  • JCR Impact Factor: 1.424 (2022)
  • Category normalized Impact: 0.87 (2021)
  • JCR 5-year Impact Factor: 1.789
  • JCR Categories: MULTIDISCIPLINARY SCIENCES

Algorithmic robustness to preferred orientations in single particle analysis by CryoEM

  • Sorzano C.O.S.
  • Semchonok D.
  • Lin S.C.
  • Lo Y.C.
  • Vilas J.L.
  • Jiménez-Moreno A.
  • Gragera M.
  • Vacca S.
  • Maluenda D.
  • Martínez M.
  • Ramírez-Aportela E.
  • Melero R.
  • Cuervo A.
  • Conesa J.J.
  • Conesa P.
  • Losana P.
  • Caño L.d.
  • de la Morena J.J.
  • Fonseca Y.C.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro F.
  • Herreros D.
  • Kastritis P.L.
  • Marabini R.
  • Bruce B.D.
  • Carazo J.M.
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JOURNAL OF STRUCTURAL BIOLOGY - 1/3/2021

10.1016/j.jsb.2020.107695

Cite count: 19 (Web of Science) 3 (Scopus)
  • JCR Quartile: Q2 (2021)
  • JCR Impact Factor: 3.234 (2022)
  • Category normalized Impact: 1.479 (2021)
  • CiteScore: 5.5 (2020)
  • SJR: 2.564 (2020
  • SNIP: 1.018 (2020
  • JCR 5-year Impact Factor: 4.064
  • JCR Categories: CELL BIOLOGY

Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins

  • Marabini R.
  • Condezo G.N.
  • Krupovic M.
  • Menéndez-Conejero R.
  • Gómez-Blanco J.
  • Martín C.S.

SCIENCE ADVANCES - 1/3/2021

10.1126/sciadv.abe6008

Cite count: 11 (Web of Science) 2 (Scopus)
  • JCR Impact Factor: 14.98 (2021)
  • CiteScore: 16.6 (2020)
  • SJR: 5.928 (2020
  • SNIP: 3.445 (2020
  • JCR 5-year Impact Factor: 16.9
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
Open Access

Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses

  • Marta Pérez-Illana
  • Marta Martínez
  • Gabriela N. Condezo
  • Mercedes Hernando-Pérez
  • Casandra Mangroo
  • Martha Brown
  • Roberto Marabini
  • Carmen San Martín
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SCIENCE ADVANCES - 26/2/2021

10.1126/sciadv.abd9421

Cite count: 12 (Web of Science) 5 (Scopus)
  • JCR Impact Factor: 14.98 (2021)
  • CiteScore: 16.6 (2020)
  • SJR: 5.928 (2020
  • SNIP: 3.445 (2020
  • JCR 5-year Impact Factor: 16.9
  • JCR Categories: MULTIDISCIPLINARY SCIENCES

Cryo-EM density maps adjustment for subtraction, consensus and sharpening

  • Fernández-Giménez E.
  • Martínez M.
  • Sánchez-García R.
  • Marabini R.
  • Ramírez-Aportela E.
  • Conesa P.
  • Carazo J.M.
  • Sorzano C.O.S.
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY - 1/12/2021

10.1016/j.jsb.2021.107780

Cite count: 8 (Web of Science) 1 (Scopus)
  • JCR Impact Factor: 3.234 (2021)
  • CiteScore: 5.5 (2020)
  • SJR: 2.564 (2020
  • SNIP: 1.018 (2020
  • JCR 5-year Impact Factor: 4.064
  • JCR Categories: CELL BIOLOGY
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
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Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)
  • SJR Quartile: Q3
  • CiteScore: 2.2 (2020)
  • SJR: 0.751 (2013
  • SNIP: 0.362 (2013
  • SJR Categories: Genetics (Q3); Molecular Biology (Q3)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Iterative Reconstruction for PET scanners with continuous scintillators

  • Iriarte A.
  • Caffarena G.
  • Lopez-Fernandez M.
  • Garcia-Carmona R.
  • Otero A.
  • Sorzano C.
  • Marabini R.
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2015 37TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC) - 4/08/2015

10.1109/embc.2015.7318842 View source

Cite count:
  • CiteScore: 1.5 (2020)
  • SJR: 0.263 (2015
  • SNIP: 0.653 (2015

Outlier detection for single particle analysis in Electron Microscopy

  • Sorzano, C. O. S.
  • Vargas, J.
  • de la Rosa-Trevin, J. M.
  • Zaldivar-Peraza, A.
  • Oton, J.
  • Abrishami, V.
  • Foche, I.
  • Marabini, R.
  • Caffarena, G.
  • Carazo, J. M.
  • Ortuno, F
  • Rojas, I
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PROCEEDINGS IWBBIO 2014: INTERNATIONAL WORK-CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING, VOLS 1 AND 2 - 2014

Cite count: 10 (Web of Science)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 3.192 (2014)

AN IMAGE PROCESSING APPROACH TO THE SIMULATION OF ELECTRON MICROSCOPY VOLUMES OF ATOMIC STRUCTURES

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
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2014 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP) - 28/01/2014

10.1109/icip.2014.7025420 View source

Cite count:
  • SJR Categories: Computer Vision and Pattern Recognition

Image processing for Cellular tomography using soft X-rays

  • Sorzano, C. O. S.
  • Oton, J.
  • Cuenca, J.
  • Zaldivar-Perez, A.
  • Caffarena, G.
  • Sanchez-Jimenez, J.
  • Messaoudi, C.
  • Marco, S.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE
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2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI) - 2012

Cite count:

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano, C. O. S.
  • Iriarte, A.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE

WISP 2009: 6TH IEEE INTERNATIONAL SYMPOSIUM ON INTELLIGENT SIGNAL PROCESSING, PROCEEDINGS - 10/08/2009

10.1109/wisp.2009.5286563 View source

Cite count: 3 (Scopus)
  • SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing

3D reconstruction of 2D crystals from projections in real space

  • Marabini, R
  • Herman, GT
  • Sorzano, COS
  • Carazo, JM
  • Fernandez, JJ
  • Matej, S
  • IEEE
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2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029351 View source

Cite count: 1 (Scopus)

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R.
  • Herman G.
  • Sorzano C.
  • Carazo J.

2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029339 View source

Cite count: 5 (Scopus)

Effects of uneven sampling in 3D reconstructions.

  • Sorzano, COS
  • Marabini, R
  • Carazo, JM
  • Rietzel, E
  • Schroeder, R
  • Herman, GT
  • Boisset, N
  • Benavides, HAC
  • Yacaman, MJ
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ELECTRON MICROSCOPY 1998, VOL 1 - 1998

Cite count:

Zero-loss P-contrast in EFTEM

  • Rietzel, E
  • Schorsch, P
  • Muller, H
  • Marabini, R
  • Sorzano, C
  • Carazo, JM
  • Schimpf, U
  • Leue, C
  • Holmes, KC
  • Schroder, RR
  • Benavides, HAC
  • Yacaman, MJ
... View more Collapse

ELECTRON MICROSCOPY 1998, VOL 4 - 1998

Cite count:

Electron tomography of biological specimens

  • Marabini R.
  • Carmen San Martin M.
  • Carazo J.

Studies in Health Technology and Informatics - 1/1/1997

10.3233/978-1-60750-874-8-53

Cite count: 2 (Scopus)
  • CiteScore: 1.2 (2020)

This author has no patents.

Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins

  • Roberto Marabini
  • Gabriela N. Condezo
  • Josué Gómez-Blanco
  • Carmen San Martín

Science Advances - 24/07/2020

10.1101/2020.07.24.220046

  • JCR Impact Factor: 14.143 (2020)
  • JCR 5-year Impact Factor: 16.45
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • ORCID

Scopus: 23

Web of Science: 28

Scopus: 57

Web of Science: 72

Last data update: 11/20/24 2:20 AM
Next scheduled update: 11/23/24 3:00 AM