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Marabini Ruiz, Roberto Author

Using Scipion for Stream Image Processing at CryoEM Facilities

  • de la Rosa-Trevin, J. M.
  • Gomez-Blanco, J.
  • Conesa, P.
  • Rancel, Y.
  • del Cano, L.
  • Arranz, R.
  • Chichon, F. J.
  • Martin-Benito, J.
  • Carroni, M.
  • Fleichman, S.
  • Lindahl, E.
  • Basham, M.
  • Clare, D. K.
  • Savage, K.
  • Siebert, C. A.
  • Ashton, A. W.
  • Marabini, R.
  • Sorzano, C. O. S.
  • Carazo, J. M.
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ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES - 7/2018

10.1107/s0108767318098380

Cite count:
  • JCR Impact Factor: 1.878 (2018)
  • JCR 5-year Impact Factor: 4.647
  • JCR Categories: CHEMISTRY, MULTIDISCIPLINARY

On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy

  • Marabini, R.
  • MacIas, J.R.
  • Vargas, J.
  • Quintana, A.
  • Sorzano, C.O.S.
  • Carazo, J.M.

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY - 1/5/2013

10.1107/s0907444913007038 View source

Cite count: 5 (Web of Science) 5 (Scopus)
  • JCR Impact Factor: 7.232 (2013)
  • CiteScore: 5.5 (2015)
  • JCR 5-year Impact Factor: 9.416
  • JCR Categories: CRYSTALLOGRAPHY

On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Martínez M.
  • Ramírez-Aportela E.
  • Krieger J.
  • Melero R.
  • Cuervo A.
  • Conesa J.
  • Filipovic J.
  • Conesa P.
  • Del Caño L.
  • Fonseca Y.C.
  • Jiménez-de la Morena J.
  • Losana P.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.P.
  • Herreros D.
  • Vilas J.L.
  • Marabini R.
  • Carazo J.M.
... View more Collapse

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY - 1/4/2022

10.1107/s2059798322001978

Cite count: 13 (Web of Science) 2 (Scopus)
  • JCR Quartile: Q2 (2022)
  • JCR Impact Factor: 2.2 (2022)
  • Category normalized Impact: 2.434 (2022)
  • JCR 5-year Impact Factor: 5.7
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY

Flexible workflows for on-the-fly electron-microscopy single-particle image processing using <i>Scipion</i>

  • Maluenda D.
  • Majtner T.
  • Horvath P.
  • Vilas J.
  • Jiménez-Moreno A.
  • Mota J.
  • Ramírez-Aportela E.
  • Sánchez-García R.
  • Conesa P.
  • Del Caño L.
  • Rancel Y.
  • Fonseca Y.
  • Martínez M.
  • Sharov G.
  • García C.
  • Strelak D.
  • Melero R.
  • Marabini R.
  • Carazo J.
  • Sorzano C.
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ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY - 1/10/2019

10.1107/s2059798319011860

Cite count: 13 (Web of Science) 8 (Scopus)
  • JCR Quartile: Q2 (2019)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.266 (2019)
  • Category normalized Impact: 0.902 (2019)
  • CiteScore: 6.6 (2019)
  • SJR: 3.906 (2019
  • SNIP: 1.429 (2019
  • JCR 5-year Impact Factor: 3.181
  • JCR Categories: BIOPHYSICS
  • SJR Categories: Structural Biology (Q1)

Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy

  • Sorzano C.
  • Jiménez A.
  • Mota J.
  • Vilas J.
  • Maluenda D.
  • Martínez M.
  • Ramírez-Aportela E.
  • Majtner T.
  • Segura J.
  • Sánchez-García R.
  • Rancel Y.
  • Del Caño L.
  • Conesa P.
  • Melero R.
  • Jonic S.
  • Vargas J.
  • Cazals F.
  • Freyberg Z.
  • Krieger J.
  • Bahar I.
  • Marabini R.
  • Carazo J.
... View more Collapse

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS - 1/1/2019

10.1107/s2053230x18015108

Cite count: 44 (Web of Science) 23 (Scopus)
  • JCR Quartile: Q2 (2019)
  • SJR Quartile: Q2
  • JCR Impact Factor: 0.968 (2019)
  • Category normalized Impact: 3.116 (2019)
  • JCR 5-year Impact Factor: 0.887
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS
  • SJR Categories: Biophysics (Q2); Condensed Matter Physics (Q2); Medicine (miscellaneous) (Q2); Biochemistry (Q3); Genetics (Q3); Structural Biology (Q3)
Open Access

Fast and accurate conversion of atomic models into electron density maps

  • Sorzano C.
  • Vargas J.
  • Otón J.
  • Abrishami V.
  • de la Rosa-Trevín J.
  • Riego S.
  • Fernández-Alderete A.
  • Martínez-Rey C.
  • Marabini R.
  • Carazo J.
... View more Collapse

AIMS BIOPHYSICS - 1/1/2015

10.3934/biophy.2015.1.8

Cite count: 32 (Web of Science) 21 (Scopus)
  • JCR Quartile: Q1 (2015)
  • SJR Quartile: Q4
  • Category normalized Impact: 1.306 (2015)
  • CiteScore: 3.9 (2020)
  • SJR: 0.108 (2015
  • SJR Categories: Biochemistry (Q4); Biophysics (Q4); Molecular Biology (Q4); Structural Biology (Q4)

Optimization problems in electron microscopy of single particles

  • Sorzano, C. O. S.
  • Marabini, R.
  • Pascual-Montano, A.
  • Scheres, S. H. W.
  • Carazo, J. M.

ANNALS OF OPERATIONS RESEARCH - 1/11/2006

10.1007/s10479-006-0078-8 View source

Cite count: 10 (Web of Science) 10 (Scopus)
  • JCR Quartile: Q2 (2006)
  • SJR Quartile: Q2
  • JCR Impact Factor: 0.589 (2022)
  • Category normalized Impact: 0.264 (2006)
  • CiteScore: 5.2 (2020)
  • SJR: 0.61 (2006
  • SNIP: 0.983 (2006
  • SJR Categories: Decision Sciences (miscellaneous) (Q2); Management Science and Operations Research (Q2)

Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data

  • Carazo, J. M.
  • Sorzano, C. O. S.
  • Oton, J.
  • Marabini, R.
  • Vargas, J.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS - 1/9/2015

10.1016/j.abb.2015.05.003 View source

Cite count: 19 (Web of Science) 14 (Scopus)
  • JCR Quartile: Q1 (2015)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.807 (2022)
  • Category normalized Impact: 0.299 (2015)
  • CiteScore: 5.8 (2020)
  • SJR: 1.513 (2015
  • SNIP: 1.008 (2015
  • JCR 5-year Impact Factor: 3.073
  • JCR Categories: BIOPHYSICS
  • SJR Categories: Biochemistry (Q1); Biophysics (Q1); Molecular Biology (Q2)

Validation of electron microscopy initial models via small angle X-ray scattering curves

  • Jiménez A.
  • Jonic S.
  • Majtner T.
  • Otón J.
  • Vilas J.
  • Maluenda D.
  • Mota J.
  • Ramírez-Aportela E.
  • Martínez M.
  • Rancel Y.
  • Segura J.
  • Sánchez-García R.
  • Melero R.
  • Del Cano L.
  • Conesa P.
  • Skjaerven L.
  • Marabini R.
  • Carazo J.
  • Sorzano C.
... View more Collapse

BIOINFORMATICS - 15/7/2019

10.1093/bioinformatics/bty985

Cite count: 7 (Web of Science) 1 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 5.61 (2019)
  • CiteScore: 9.9 (2020)
  • SJR: 3.567 (2019
  • SNIP: 1.864 (2019
  • JCR 5-year Impact Factor: 9.853
  • JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
  • SJR Categories: Biochemistry (Q1); Computational Mathematics (Q1); Computational Theory and Mathematics (Q1); Computer Science Applications (Q1); Molecular Biology (Q1); Statistics and Probability (Q1)

Automatic local resolution-based sharpening of cryo-EM maps

  • Ramírez-Aportela E.
  • Vilas J.
  • Glukhova A.
  • Melero R.
  • Conesa P.
  • Martínez M.
  • Maluenda D.
  • Mota J.
  • Jiménez A.
  • Vargas J.
  • Marabini R.
  • Sexton P.
  • Carazo J.
  • Sorzano C.
... View more Collapse

BIOINFORMATICS - 1/2/2020

10.1093/bioinformatics/btz671

Cite count: 87 (Web of Science) 36 (Scopus)
  • JCR Impact Factor: 6.937 (2020)
  • CiteScore: 9.9 (2020)
  • SJR: 3.599 (2020
  • SNIP: 2.056 (2020
  • JCR 5-year Impact Factor: 8.47
  • JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... View more Collapse

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)
  • SJR Quartile: Q3
  • CiteScore: 2.2 (2020)
  • SJR: 0.751 (2013
  • SNIP: 0.362 (2013
  • SJR Categories: Genetics (Q3); Molecular Biology (Q3)

3D reconstruction of 2D crystals from projections in real space

  • Marabini, R
  • Herman, GT
  • Sorzano, COS
  • Carazo, JM
  • Fernandez, JJ
  • Matej, S
  • IEEE
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2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029351 View source

Cite count: 1 (Scopus)

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R.
  • Herman G.
  • Sorzano C.
  • Carazo J.

2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002

10.1109/isbi.2002.1029339 View source

Cite count: 5 (Scopus)

Image processing for Cellular tomography using soft X-rays

  • Sorzano, C. O. S.
  • Oton, J.
  • Cuenca, J.
  • Zaldivar-Perez, A.
  • Caffarena, G.
  • Sanchez-Jimenez, J.
  • Messaoudi, C.
  • Marco, S.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE
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2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI) - 2012

Cite count:

AN IMAGE PROCESSING APPROACH TO THE SIMULATION OF ELECTRON MICROSCOPY VOLUMES OF ATOMIC STRUCTURES

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
... View more Collapse

2014 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP) - 28/01/2014

10.1109/icip.2014.7025420 View source

Cite count:
  • SJR Categories: Computer Vision and Pattern Recognition

Iterative Reconstruction for PET scanners with continuous scintillators

  • Iriarte A.
  • Caffarena G.
  • Lopez-Fernandez M.
  • Garcia-Carmona R.
  • Otero A.
  • Sorzano C.
  • Marabini R.
... View more Collapse

2015 37TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC) - 4/08/2015

10.1109/embc.2015.7318842 View source

Cite count:
  • CiteScore: 1.5 (2020)
  • SJR: 0.263 (2015
  • SNIP: 0.653 (2015

Pattern recognition and classification of images of biological macromolecules using neural networks

  • MARABINI, R
  • CARAZO, JM
  • Jouffrey, B
  • Colliex, C

ELECTRON MICROSCOPY 1994, VOL 1 - 1994

Cite count:

Towards a data-bank of three-dimensional macromolecular structures: A WWW-based prototype

  • CARAZO, JM
  • MARABINI, R
  • VAQUERIZO, C
  • FRANK, J
  • Jouffrey, B
  • Colliex, C

ELECTRON MICROSCOPY 1994, VOL 1 - 1994

Cite count:

STUDY OF THE COLLARS EXTRACTED FROM T3 AND 029 VIRAL PARTICLES

  • MARCO, S
  • VALPUESTA, JM
  • CARAZO, JM
  • MARABINI, R
  • FUJISAWA, H
  • CARRASCOSA, JL
  • Jouffrey, B
  • Colliex, C
... View more Collapse

ELECTRON MICROSCOPY 1994, VOLS 3A AND 3B - 1994

Cite count:

Effects of uneven sampling in 3D reconstructions.

  • Sorzano, COS
  • Marabini, R
  • Carazo, JM
  • Rietzel, E
  • Schroeder, R
  • Herman, GT
  • Boisset, N
  • Benavides, HAC
  • Yacaman, MJ
... View more Collapse

ELECTRON MICROSCOPY 1998, VOL 1 - 1998

Cite count:

Zero-loss P-contrast in EFTEM

  • Rietzel, E
  • Schorsch, P
  • Muller, H
  • Marabini, R
  • Sorzano, C
  • Carazo, JM
  • Schimpf, U
  • Leue, C
  • Holmes, KC
  • Schroder, RR
  • Benavides, HAC
  • Yacaman, MJ
... View more Collapse

ELECTRON MICROSCOPY 1998, VOL 4 - 1998

Cite count:

This author has no patents.

Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins

  • Roberto Marabini
  • Gabriela N. Condezo
  • Josué Gómez-Blanco
  • Carmen San Martín

Science Advances - 24/07/2020

10.1101/2020.07.24.220046

  • JCR Impact Factor: 14.143 (2020)
  • JCR 5-year Impact Factor: 16.45
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • ORCID

Scopus: 23

Web of Science: 28

Scopus: 57

Web of Science: 72

Last data update: 11/20/24 2:20 AM
Next scheduled update: 11/23/24 3:00 AM