Marabini Ruiz, Roberto Autor
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
- Jiménez de la Morena J.
- Conesa P.
- Fonseca Y.C.
- de Isidro-Gómez F.P.
- Herreros D.
- Fernández-Giménez E.
- Strelak D.
- Moebel E.
- Buchholz T.O.
- Jug F.
- Martinez-Sanchez A.
- Harastani M.
- Jonic S.
- Conesa J.J.
- Cuervo A.
- Losana P.
- Sánchez I.
- Iceta M.
- del Cano L.
- Gragera M.
- Melero R.
- Sharov G.
- Castaño-Díez D.
- Koster A.
- Piccirillo J.G.
- Vilas J.L.
- Otón J.
- Marabini R.
- Sorzano C.O.S.
- Carazo J.M.
Journal of Structural Biology - 1/9/2022
- CiteScore: 5,3 (2021)
- SJR: 1,594 (2021)
- SNIP: 0,842 (2021)
- ORCID
- Scopus
On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Martínez M.
- Ramírez-Aportela E.
- Krieger J.
- Melero R.
- Cuervo A.
- Conesa J.
- Filipovic J.
- Conesa P.
- Del Caño L.
- Fonseca Y.C.
- Jiménez-de la Morena J.
- Losana P.
- Sánchez-García R.
- Strelak D.
- Fernández-Giménez E.
- de Isidro-Gómez F.P.
- Herreros D.
- Vilas J.L.
- Marabini R.
- Carazo J.M.
Acta crystallographica. Section D, Structural biology - 1/4/2022
- ORCID
- Scopus
Image processing tools for the validation of CryoEM maps
- C. O. S. Sorzano
- J. L. Vilas
- E. Ramírez-Aportela
- J. Krieger
- D. del Hoyo
- D. Herreros
- E. Fernandez-Giménez
- D. Marchán
- J. R. Macías
- I. Sánchez
- L. del Caño
- Y. Fonseca-Reyna
- P. Conesa
- A. García-Mena
- J. Burguet
- J. García Condado
- J. Méndez García
- M. Martínez
- A. Muñoz-Barrutia
- R. Marabini
- J. Vargas
- J. M. Carazo
Faraday Discussions - 1/1/2022
- ORCID
- Scopus
Cryo-EM and Single-Particle Analysis with Scipion
- Jiménez-Moreno A.
- Del Caño L.
- Martínez M.
- Ramírez-Aportela E.
- Cuervo A.
- Melero R.
- Sánchez-García R.
- Strelak D.
- Fernández-Giménez E.
- de Isidro-Gómez F.P.
- Herreros D.
- Conesa P.
- Fonseca Y.
- Maluenda D.
- Jiménez de la Morena J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
- Sorzano C.O.S.
Journal of visualized experiments : JoVE - 29/5/2021
- ORCID
- Scopus
- Web of Science
Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins
- Marabini R.
- Condezo G.N.
- Krupovic M.
- Menéndez-Conejero R.
- Gómez-Blanco J.
- Martín C.S.
Science Advances - 1/3/2021
- CiteScore: 16,6 (2020)
- SJR: 5,928 (2020)
- SNIP: 3,445 (2020)
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM
- Sorzano C.O.S.
- Semchonok D.
- Lin S.C.
- Lo Y.C.
- Vilas J.L.
- Jiménez-Moreno A.
- Gragera M.
- Vacca S.
- Maluenda D.
- Martínez M.
- Ramírez-Aportela E.
- Melero R.
- Cuervo A.
- Conesa J.J.
- Conesa P.
- Losana P.
- Caño L.d.
- de la Morena J.J.
- Fonseca Y.C.
- Sánchez-García R.
- Strelak D.
- Fernández-Giménez E.
- de Isidro F.
- Herreros D.
- Kastritis P.L.
- Marabini R.
- Bruce B.D.
- Carazo J.M.
Journal of Structural Biology - 1/3/2021
- CiteScore: 5,5 (2020)
- SJR: 2,564 (2020)
- SNIP: 1,018 (2020)
- ORCID
- Scopus
- Web of Science
FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation
- Ramírez-Aportela E.
- Maluenda D.
- Fonseca Y.C.
- Conesa P.
- Marabini R.
- Heymann J.B.
- Carazo J.M.
- Sorzano C.O.S.
Nature Communications - 1/12/2021
- ORCID
- Web of Science
- Scopus
Cryo-EM density maps adjustment for subtraction, consensus and sharpening
- Fernández-Giménez E.
- Martínez M.
- Sánchez-García R.
- Marabini R.
- Ramírez-Aportela E.
- Conesa P.
- Carazo J.M.
- Sorzano C.O.S.
Journal of Structural Biology - 1/12/2021
- CiteScore: 5,5 (2020)
- SJR: 2,564 (2020)
- SNIP: 1,018 (2020)
- ORCID
- Scopus
- Web of Science
Advances in xmipp for cryo–electron microscopy: From xmipp to scipion
- Strelak D.
- Jiménez-Moreno A.
- Vilas J.L.
- Ramírez-Aportela E.
- Sánchez-García R.
- Maluenda D.
- Vargas J.
- Herreros D.
- Fernández-Giménez E.
- de Isidro-Gómez F.P.
- Horacek J.
- Myska D.
- Horacek M.
- Conesa P.
- Fonseca-Reyna Y.C.
- Jiménez J.
- Martínez M.
- Harastani M.
- Jonić S.
- Filipovic J.
- Marabini R.
- Carazo J.M.
- Sorzano C.O.S.
Molecules - 1/10/2021
- ORCID
- Scopus
- Web of Science
Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses
- Marta Pérez-Illana
- Marta Martínez
- Gabriela N. Condezo
- Mercedes Hernando-Pérez
- Casandra Mangroo
- Martha Brown
- Roberto Marabini
- Carmen San Martín
Science Advances - 24/02/2021
- CiteScore: 16,6 (2020)
- SJR: 5,928 (2020)
- SNIP: 3,445 (2020)
- Web of Science
- ORCID
- Scopus
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- CiteScore: 2,2 (2020)
- SJR: 0,711 (2020)
- SNIP: 0,57 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- CiteScore: 0,8 (2020)
- ORCID
- Scopus
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Iterative Reconstruction for PET scanners with continuous scintillators
- Iriarte A.
- Caffarena G.
- Lopez-Fernandez M.
- Garcia-Carmona R.
- Otero A.
- Sorzano C.
- Marabini R.
2015 37TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC) - 4/11/2015
10.1109/embc.2015.7318842 Ver en origen
- CiteScore: 1,5 (2020)
- SJR: 0,263 (2015)
- SNIP: 0,653 (2015)
- ORCID
- Scopus
- Web of Science
AN IMAGE PROCESSING APPROACH TO THE SIMULATION OF ELECTRON MICROSCOPY VOLUMES OF ATOMIC STRUCTURES
- Sorzano, C.O.S.
- Vargas, J.
- Oton, J.
- Abrishami, V.
- De La Rosa-Trevin, J.M.
- Del Riego, S.
- Fernandez-Alderete, A.
- Martinez-Rey, C.
- Marabini, R.
- Carazo, J.M.
2014 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP) - 28/1/2014
10.1109/icip.2014.7025420 Ver en origen
- Categorías SJR: Computer Vision and Pattern Recognition
- ORCID
- Scopus
- Web of Science
Image processing for Cellular tomography using soft X-rays
- Sorzano, C. O. S.
- Oton, J.
- Cuenca, J.
- Zaldivar-Perez, A.
- Caffarena, G.
- Sanchez-Jimenez, J.
- Messaoudi, C.
- Marco, S.
- Marabini, R.
- Carazo, J. M.
- IEEE
2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI) - 2012
- ORCID
- Web of Science
Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
WISP 2009: 6TH IEEE INTERNATIONAL SYMPOSIUM ON INTELLIGENT SIGNAL PROCESSING, PROCEEDINGS - 10/12/2009
10.1109/wisp.2009.5286563 Ver en origen
- Categorías SJR: Computer Networks and Communications; Media Technology; Signal Processing
- Web of Science
- ORCID
- Scopus
Consistent and elastic registration of histological sections using vector-spline regularization
- Arganda-Carreras, Ignacio
- Sorzano, Carlos O. S.
- Marabini, Roberto
- Carazo, Jose Maria
- Ortiz-de-Solorzano, Carlos
- Kybic, Jan
- Beichel, RR
COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006
10.1007/11889762_8 Ver en origen
- CiteScore: 1,8 (2020)
- SJR: 0,317 (2006)
- SNIP: 0,679 (2006)
- ORCID
- Scopus
- Web of Science
3D reconstruction of 2D crystals from projections in real space
2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002
10.1109/isbi.2002.1029351 Ver en origen
- ORCID
- Scopus
- Web of Science
Volumetric constraints in 3D tomography applied to electron microscopy
- Marabini R.
- Herman G.
- Sorzano C.
- Carazo J.
2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS - 1/1/2002
10.1109/isbi.2002.1029339 Ver en origen
- ORCID
- Scopus
- Web of Science
Zero-loss P-contrast in EFTEM
- Rietzel, E
- Schorsch, P
- Muller, H
- Marabini, R
- Sorzano, C
- Carazo, JM
- Schimpf, U
- Leue, C
- Holmes, KC
- Schroder, RR
- Benavides, HAC
- Yacaman, MJ
ELECTRON MICROSCOPY 1998, VOL 4 - 1998
- ORCID
- Web of Science
Effects of uneven sampling in 3D reconstructions.
- Sorzano, COS
- Marabini, R
- Carazo, JM
- Rietzel, E
- Schroeder, R
- Herman, GT
- Boisset, N
- Benavides, HAC
- Yacaman, MJ
ELECTRON MICROSCOPY 1998, VOL 1 - 1998
- ORCID
- Web of Science
Three-dimensional reconstruction from reduced sets of very noisy images acquired following a single-axis tilt schema: Application of a new three-dimensional reconstruction algorithm and objective comparison with weighted backprojection
- Marabini, R.
- Rietzel, E.
- Schroeder, R.
- Herman, G.T.
- Carazo, J.M.
JOURNAL OF STRUCTURAL BIOLOGY - 1/12/1997
10.1006/jsbi.1997.3923 Ver en origen
- CiteScore: 5,5 (2020)
- ORCID
- Scopus
- Web of Science
Este autor no tiene patentes.
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
Faraday Discussions - 11/11/2022
Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins
- Roberto Marabini
- Gabriela N. Condezo
- Josué Gómez-Blanco
- Carmen San Martín
Science Advances - 24/07/2020
- Factor Impacto JCR: 14,143 (2020)
- Impacto JCR a 5 años: 16,45
- Categorías JCR: MULTIDISCIPLINARY SCIENCES
- ORCID
Índice h
Scopus: 23
Web of Science: 27
Índice i10
Scopus: 57
Web of Science: 64
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Proyectos de investigación en la UAL
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Acrónimo P10-TIC-06002Desde: 1 de enero de 2020Hasta: 30 de junio de 2021Financiado por: Consejería de Economía, Conocimiento, Empresas y UniversidadImporte de financiación: 49.900,00 EURRol: Investigador