Carazo García, José María Autor

Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials

  • D. Herreros
  • R. R. Lederman
  • J. M. Krieger
  • A. Jiménez-Moreno
  • M. Martínez
  • D. Myška
  • D. Strelak
  • J. Filipovic
  • C. O. S. Sorzano
  • J. M. Carazo
... Ver más Contraer

Nature Communications - 11/01/2023

10.1038/s41467-023-35791-y

Número de citas:

Emerging Themes in CryoEM─Single Particle Analysis Image Processing

  • Vilas J.L.
  • Carazo J.M.
  • Sorzano C.O.S.

Chemical Reviews - 14/9/2022

10.1021/acs.chemrev.1c00850

Número de citas:

Cryo-Electron Microscopy: The field of 1,000+ methods

  • Sorzano C.O.S.
  • Carazo J.M.

Journal of Structural Biology - 1/9/2022

10.1016/j.jsb.2022.107861

Número de citas: 2 (Web of Science) 2 (Scopus)

Higher resolution in cryo-EM by the combination of macromolecular prior knowledge and image-processing tools

  • Ramírez-Aportela E.
  • Carazo J.M.
  • Sorzano C.O.S.
  • Sun F.

IUCrJ - 1/9/2022

10.1107/s2052252522006959

Número de citas:

ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

  • Jiménez de la Morena J.
  • Conesa P.
  • Fonseca Y.C.
  • de Isidro-Gómez F.P.
  • Herreros D.
  • Fernández-Giménez E.
  • Strelak D.
  • Moebel E.
  • Buchholz T.O.
  • Jug F.
  • Martinez-Sanchez A.
  • Harastani M.
  • Jonic S.
  • Conesa J.J.
  • Cuervo A.
  • Losana P.
  • Sánchez I.
  • Iceta M.
  • del Cano L.
  • Gragera M.
  • Melero R.
  • Sharov G.
  • Castaño-Díez D.
  • Koster A.
  • Piccirillo J.G.
  • Vilas J.L.
  • Otón J.
  • Marabini R.
  • Sorzano C.O.S.
  • Carazo J.M.
... Ver más Contraer

Journal of Structural Biology - 1/9/2022

10.1016/j.jsb.2022.107872

Número de citas:

On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Martínez M.
  • Ramírez-Aportela E.
  • Krieger J.
  • Melero R.
  • Cuervo A.
  • Conesa J.
  • Filipovic J.
  • Conesa P.
  • Del Caño L.
  • Fonseca Y.C.
  • Jiménez-de la Morena J.
  • Losana P.
  • Sánchez-García R.
  • Strelak D.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.P.
  • Herreros D.
  • Vilas J.L.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Acta crystallographica. Section D, Structural biology - 1/4/2022

10.1107/s2059798322001978

Número de citas: 2 (Scopus)

BIPSPI+: Mining Type-Specific Datasets of Protein Complexes to Improve Protein Binding Site Prediction

  • Sanchez-Garcia R.
  • Macias J.R.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Segura J.

Journal of Molecular Biology - 1/1/2022

10.1016/j.jmb.2022.167556

Número de citas: 1 (Scopus)

Image processing tools for the validation of CryoEM maps

  • C. O. S. Sorzano
  • J. L. Vilas
  • E. Ramírez-Aportela
  • J. Krieger
  • D. del Hoyo
  • D. Herreros
  • E. Fernandez-Giménez
  • D. Marchán
  • J. R. Macías
  • I. Sánchez
  • L. del Caño
  • Y. Fonseca-Reyna
  • P. Conesa
  • A. García-Mena
  • J. Burguet
  • J. García Condado
  • J. Méndez García
  • M. Martínez
  • A. Muñoz-Barrutia
  • R. Marabini
  • J. Vargas
  • J. M. Carazo
... Ver más Contraer

Faraday Discussions - 1/1/2022

10.1039/d2fd00059h

Número de citas:

Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0

  • James Michael Krieger
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo
  • Ivet Bahar

Acta Crystallographica Section D Structural Biology - 1/04/2022

10.1107/s2059798322001966

Número de citas: 2 (Scopus)

Structural analysis of receptors and actin polarity in platelet protrusions

  • Sorrentino S.
  • Conesa J.J.
  • Cuervo A.
  • Melero R.
  • Martins B.
  • Fernandez-Gimenez E.
  • De Isidro-Gomez F.P.
  • De la Morena J.
  • Studt J.D.
  • Sorzano C.O.S.
  • Eibauer M.
  • Carazo J.M.
  • Medalia O.
... Ver más Contraer

Proceedings of the National Academy of Sciences of the United States of America - 14/9/2021

10.1073/pnas.2105004118

Número de citas: 9 (Web of Science)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 3 (Web of Science) 1 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 7 (Web of Science) 4 (Scopus)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

METHODS IN ENZYMOLOGY, VOL 482: CRYO-EM, PART B: 3-D RECONSTRUCTION - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 59 (Web of Science) 52 (Scopus)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)

AN IMAGE PROCESSING APPROACH TO THE SIMULATION OF ELECTRON MICROSCOPY VOLUMES OF ATOMIC STRUCTURES

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
... Ver más Contraer

2014 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP) - 28/1/2014

10.1109/icip.2014.7025420 Ver en origen

Número de citas:
Open Access

Extracting and normalizing gene/protein mentions with the flexible and trainable Moara Java library

  • Neves M.
  • Carazo J.
  • Pascual-Montano A.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 25/6/2010

10.1007/978-3-642-13131-8_9

Número de citas: 1 (Scopus)

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano, C. O. S.
  • Iriarte, A.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE

WISP 2009: 6TH IEEE INTERNATIONAL SYMPOSIUM ON INTELLIGENT SIGNAL PROCESSING, PROCEEDINGS - 10/12/2009

10.1109/wisp.2009.5286563 Ver en origen

Número de citas: 3 (Scopus)

Introducing robustness to maximum-likelihood refinement of electron-microsopy data

  • Scheres, Sjors H. W.
  • Carazo, Jose-Maria

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY - 10/07/2009

10.1107/s0907444909012049

Número de citas: 6 (Web of Science) 6 (Scopus)

Flexible image registration for the identification of best fitted protein models in 3D-EM maps

  • Fernandez-de-Manuell, Laura
  • Ledesma-Carbayol, Maria J.
  • Atienza-Herrero, Julian
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
... Ver más Contraer

2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4 - 10/9/2008

10.1109/isbi.2008.4541163 Ver en origen

Número de citas:

CBR-Tagger: A case-based reasoning approach to the gene/protein mention problem

  • Neves M.
  • Chagoyen M.
  • Carazo J.M.
  • Pascual-Montano A.

BioNLP 2008 - Current Trends in Biomedical Natural Language Processing, Proceedings of the Workshop - 1/1/2008

Número de citas: 3 (Scopus)

Flexible fitting in 3D-EM with incomplete data on superfamily variability

  • Velazquez-Muriel, Javier A.
  • Carazo, Jose-Maria

JOURNAL OF STRUCTURAL BIOLOGY - 1/05/2007

10.1016/j.jsb.2006.10.014

Número de citas: 22 (Web of Science) 21 (Scopus)

Integrating electron microscopy information into existing distributed annotation systems

  • Macias, J. R.
  • Jimenez-Lozano, N.
  • Carazo, J. M.

JOURNAL OF STRUCTURAL BIOLOGY - 1/05/2007

10.1016/j.jsb.2007.02.004

Número de citas: 11 (Web of Science) 11 (Scopus)

Molecular image registration using mutual information and differential evolution optimization

  • Telenczuk, Bartosz
  • Ledesma-Carbayo, Marta J.
  • Velazquez-Muriel, Javier A.
  • Sorzano, Carlos O. S.
  • Carazo, Jose-Maria
  • Santos, Andres
  • IEEE
... Ver más Contraer

2006 3RD IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1-3 - 17/11/2006

Número de citas: 4 (Web of Science) 11 (Scopus)
Open Access

Consistent and elastic registration of histological sections using vector-spline regularization

  • Arganda-Carreras, Ignacio
  • Sorzano, Carlos O. S.
  • Marabini, Roberto
  • Carazo, Jose Maria
  • Ortiz-de-Solorzano, Carlos
  • Kybic, Jan
  • Beichel, RR
... Ver más Contraer

COMPUTER VISION APPROACHES TO MEDICAL IMAGE ANALYSIS - 1/1/2006

10.1007/11889762_8 Ver en origen

Número de citas: 231 (Web of Science) 203 (Scopus)

Este autor no tiene patentes.

Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)

  • Sorzano C.O.S.
  • Vilas J.L.
  • Ramírez-Aportela E.
  • Krieger J.
  • Del Hoyo D.
  • Herreros D.
  • Fernandez-Giménez E.
  • Marchán D.
  • De Isidro Gómez F.
  • Macías J.R.
  • Sánchez I.
  • Del Caño L.
  • Fonseca-Reyna Y.
  • Conesa P.
  • García-Mena A.
  • Burguet J.
  • García Condado J.
  • Méndez García J.
  • Martínez M.
  • Muñoz-Barrutia A.
  • Marabini R.
  • Vargas J.
  • Carazo J.M.
... Ver más Contraer

Faraday Discussions - 11/11/2022

10.1039/d2fd90074b

Número de citas:
Open Access

Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)

  • Ginex T.
  • Marco-Marín C.
  • Wieczór M.
  • Mata C.
  • Krieger J.
  • Ruiz-Rodriguez P.
  • López-Redondo M.L.
  • Francés-Gómez C.
  • Melero R.
  • Sánchez-Sorzano C.Ó.
  • Martínez M.
  • Gougeard N.
  • Forcada-Nadal A.
  • Zamora-Caballero S.
  • Gozalbo-Rovira R.
  • Sanz-Frasquet C.
  • Arranz R.
  • Bravo J.
  • Rubio V.
  • Marina A.
  • Geller R.
  • Comas I.
  • Gil C.
  • Coscolla M.
  • Orozco M.
  • Llácer J.L.
  • Carazo J.M.
... Ver más Contraer

PLoS Pathogens - 1/11/2022

10.1371/journal.ppat.1010995

Número de citas:
Open Access

The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation

  • Tiziana Ginex
  • Clara Marco-Marín
  • Miłosz Wieczór
  • Carlos P. Mata
  • James Krieger
  • Maria Luisa López-Redondo
  • Clara Francés-Gómez
  • Paula Ruiz-Rodriguez
  • Roberto Melero
  • Carlos Óscar Sánchez-Sorzano
  • Marta Martínez
  • Nadine Gougeard
  • Alicia Forcada-Nadal
  • Sara Zamora-Caballero
  • Roberto Gozalbo-Rovira
  • Carla Sanz-Frasquet
  • Jeronimo Bravo
  • Vicente Rubio
  • Alberto Marina
  • Ron Geller
  • Iñaki Comas
  • Carmen Gil
  • Mireia Coscolla
  • Modesto Orozco
  • José Luis Llácer
  • José-Maria Carazo
... Ver más Contraer

PLoS Pathogens - 7/12/2021

10.1371/journal.ppat.1010631

Número de citas:

Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules (Nature Communications, (2021), 12, 1, (939), 10.1038/s41467-021-21184-6)

  • Lapenta F.
  • Aupič J.
  • Vezzoli M.
  • Strmšek Ž.
  • Da Vela S.
  • Svergun D.I.
  • Carazo J.M.
  • Melero R.
  • Jerala R.
... Ver más Contraer

Nature Communications - 1/12/2021

10.1038/s41467-021-21969-9

Número de citas:

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

17/07/2020

10.26434/chemrxiv.12652997.v2

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

05/2020

10.1101/2020.05.12.069831

  • ORCID

Improvements on marker-free images alignment for electron tomography

  • C.O.S. Sorzano
  • F. de Isidro-Gómez
  • E. Fernández-Giménez
  • D. Herreros
  • S. Marco
  • J.M. Carazo
  • C. Messaoudi
... Ver más Contraer

Journal of Structural Biology: X - 24/05/2020

10.1101/2020.05.22.110445

Número de citas: 1 (Web of Science)

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

10/2018

10.1101/433284

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Scopus: 52

Web of Science: 53

Scopus: 178

Web of Science: 177

Última actualización de los datos: 28/01/23 19:32
Próxima recolección programada: 4/02/23 3:00