Carazo García, José María Autor

Performance and Quality Comparison of Movie Alignment Software for Cryogenic Electron Microscopy

  • David Střelák
  • Daniel Marchán
  • José María Carazo
  • Carlos O. S. Sorzano

Micromachines - 26/09/2023

10.3390/mi14101835

Número de citas:
Open Access

Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap

  • Albanese, Pascal
  • Melero, Roberto
  • Engel, Benjamin D.
  • Grinzato, Alessandro
  • Berto, Paola
  • Manfredi, Marcello
  • Chiodoni, Angelica
  • Vargas, Javier
  • Sanchez Sorzano, Carlos Oscar
  • Marengo, Emilio
  • Saracco, Guido
  • Zanotti, Giuseppe
  • Carazo, Jose-Maria
  • Pagliano, Cristina
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Scientific Reports - 30/08/2017

10.1038/s41598-017-10700-8 Ver en origen

Número de citas: 24 (Web of Science) 20 (Scopus)
Open Access

PDBe-KB: collaboratively defining the biological context of structural data

  • Varadi, Mihaly
  • Anyango, Stephen
  • Armstrong, David
  • Berrisford, John
  • Choudhary, Preeti
  • Deshpande, Mandar
  • Nadzirin, Nurul
  • Nair, Sreenath S.
  • Pravda, Lukas
  • Tanweer, Ahsan
  • Al-Lazikani, Bissan
  • Andreini, Claudia
  • Barton, Geoffrey J.
  • Bednar, David
  • Berka, Karel
  • Blundell, Tom
  • Brock, Kelly P.
  • Maria Carazo, Jose
  • Damborsky, Jiri
  • David, Alessia
  • Dey, Sucharita
  • Dunbrack, Roland
  • Fernandez Recio, Juan
  • Fraternali, Franca
  • Gibson, Toby
  • Helmer-Citterich, Manuela
  • Hoksza, David
  • Hopf, Thomas
  • Jakubec, David
  • Kannan, Natarajan
  • Krivak, Radoslav
  • Kumar, Manjeet
  • Levy, Emmanuel D.
  • London, Nir
  • Macias, Jose Ramon
  • Srivatsan, Madhusudhan M.
  • Marks, Debora S.
  • Martens, Lennart
  • McGowan, Stuart A.
  • McGreig, Jake E.
  • Modi, Vivek
  • Gonzalo Parra, R.
  • Pepe, Gerardo
  • Piovesan, Damiano
  • Prilusky, Jaime
  • Putignano, Valeria
  • Radusky, Leandro G.
  • Ramasamy, Pathmanaban
  • Rausch, Atilio O.
  • Reuter, Nathalie
  • Rodriguez, Luis A.
  • Rollins, Nathan J.
  • Rosato, Antonio
  • Serrano, Luis
  • Singh, Gulzar
  • Skoda, Petr
  • Sorzano, Carlos Oscar S.
  • Stourac, Jan
  • Sulkowska, Joanna, I
  • Svobodova, Radka
  • Tichshenko, Natalia
  • Tosatto, Silvio C. E.
  • Vranken, Wim
  • Wass, Mark N.
  • Xue, Dandan
  • Zaidman, Daniel
  • Thornton, Janet
  • Sternberg, Michael
  • Orengo, Christine
  • Velankar, Sameer
  • PDBe-KB Consortium
... Ver más Contraer

NUCLEIC ACIDS RESEARCH - 10/11/2021

10.1093/nar/gkab988

Número de citas: 36 (Web of Science) 15 (Scopus)

Pattern recognition and classification of images of biological macromolecules using neural networks

  • MARABINI, R
  • CARAZO, JM
  • Jouffrey, B
  • Colliex, C

Electron Microscopy 1994, Vol 1 - 1994

Open Access

Pattern recognition and classification of images of biological macromolecules using artificial neural networks

  • Marabini R
  • Carazo JM

Biophysical Journal - 1/06/1994

10.1016/s0006-3495(94)80974-9 Ver en origen

Número de citas: 102 (Web of Science) 96 (Scopus)

Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques

  • Vargas, J.
  • Abrishami, V.
  • Marabini, R.
  • de la Rosa-Trevín, J.M.
  • Zaldivar, A.
  • Carazo, J.M.
  • Sorzano, C.O.S.
... Ver más Contraer

JOURNAL OF STRUCTURAL BIOLOGY - 1/09/2013

10.1016/j.jsb.2013.07.015 Ver en origen

Número de citas: 25 (Web of Science) 23 (Scopus)
Open Access

Particle alignment reliability in single particle electron cryomicroscopy: a general approach.

  • Vargas, J.
  • Oton, J.
  • Marabini, R.
  • Carazo, J. M.
  • Sorzano, C. O. S.

Scientific Reports - 22/02/2016

10.1038/srep21626 Ver en origen

Número de citas: 20 (Web of Science) 15 (Scopus)

Parameter optimization in 3D reconstruction on a large scale grid

  • Bilbao-Castro J.
  • Merino A.
  • García I.
  • Carazo J.
  • Fernández J.

Parallel Computing - 1/05/2007

10.1016/j.parco.2007.02.002

Número de citas: 7 (Scopus)
Open Access

Parallelization of reconstruction algorithms in three-dimensional electron microscopy

  • Bilbao-Castro J.
  • Carazo J.
  • García I.
  • Fernández J.

Applied Mathematical Modelling - 1/08/2006

10.1016/j.apm.2005.05.019

Número de citas: 13 (Scopus)

Parallel implementation of DNAml program on message-passing architectures

  • Ceron C.
  • Dopazo J.
  • Zapata E.L.
  • Carazo J.M.
  • Trelles O.

Parallel Computing - 1/06/1998

10.1016/s0167-8191(98)00002-7

Número de citas: 21 (Scopus)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Número de citas: 14 (Scopus)
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... Ver más Contraer

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 Ver en origen

Número de citas: 1 (Web of Science) 4 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... Ver más Contraer

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 9 (Web of Science) 4 (Scopus)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 5 (Web of Science) 1 (Scopus)

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 67 (Web of Science) 52 (Scopus)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... Ver más Contraer

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Número de citas: 1 (Web of Science) 1 (Scopus)

Using Scipion for Stream Image Processing at CryoEM Facilities

  • de la Rosa-Trevin, J. M.
  • Gomez-Blanco, J.
  • Conesa, P.
  • Rancel, Y.
  • del Cano, L.
  • Arranz, R.
  • Chichon, F. J.
  • Martin-Benito, J.
  • Carroni, M.
  • Fleichman, S.
  • Lindahl, E.
  • Basham, M.
  • Clare, D. K.
  • Savage, K.
  • Siebert, C. A.
  • Ashton, A. W.
  • Marabini, R.
  • Sorzano, C. O. S.
  • Carazo, J. M.
... Ver más Contraer

Acta Crystallographica Section A - Foundation and Advances - 07/2018

10.1107/s0108767318098380

Two-way clustering of gene expression profiles by sparse matrix factorization

  • Pascual-Montano A.
  • Carmona-Sáez P.
  • Pascual-Marqui R.
  • Tirado F.
  • Carazo J.

2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - 1/12/2005

10.1109/csbw.2005.137

Número de citas: 6 (Scopus)

Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility

  • Jose Maria Carazo Garcia

European Biophysics Journal With Biophysics Letters - 07/2019

  • ORCID

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

  • Carazo J.M.
  • Carrascosa J.
  • Santisteban A.

1/12/1985

Número de citas:

Three-dimensional domain mapping in the bacteriophage phi 29 connector

  • Jose Valpuesta
  • Mikel Valle
  • Jose-Jesus Fernandez
  • Jose Maria Carazo Garcia
  • Albar, JP
  • Leonor Kremer
  • José L. Carrascosa
... Ver más Contraer

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation

  • Tiziana Ginex
  • Wieczór, M.
  • Krieger, J.
  • Orozco, M.
  • Jose Maria Carazo Garcia
  • Carmen Gil

Xx Congreso de la Sociedad Española de Química Terapéutica - 2022

  • ORCID

Structure of DnaB and DnaB.DnaC complex.

  • Carmen San Martín
  • Radermacher, M
  • Fedtke, B
  • Engel, A
  • Miles, CS
  • Dixon, NE
  • Jose Maria Carazo Garcia
... Ver más Contraer

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Stream processing of CryoElectron Microscopy images at the acquisition site

  • D. Marchán
  • A. García-Mena
  • P. Conesa
  • Francisco Javier Chichón García
  • R. Arranz
  • Y. Fonseca-Reyna
  • L. del Caño
  • I. Sánchez-López
  • M. Iceta
  • Jose Maria Carazo Garcia
  • Carlos Oscar S. Sorzano
... Ver más Contraer

Instruct Biennial Structural Biology Conference - 2022

  • ORCID

Self-organizing networks for mapping and clustering biological macromolecules images

  • Pascual, A
  • Montserrat Barcena
  • Merelo, JJ
  • Jose Maria Carazo Garcia

Artificial Neural Networks In Medicine and Biology - 2000

  • ORCID

Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography

  • Federico P. de Isidro-Gómez
  • de la Morena, Jorge Jimenez
  • Pablo Conesa Mingo
  • David Herreros
  • Fernandez-Gimenez, Estrella
  • Fonseca, Yunior C.
  • Strelak, David
  • J.J. Conesa
  • Ana Cuervo
  • Patricia Losana
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia
... Ver más Contraer

Acta Crystallographica Section A - Foundation and Advances - 08/2021

10.1107/s0108767321097610

  • ORCID

Este autor no tiene patentes.

Open Access

The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation

  • Tiziana Ginex
  • Clara Marco-Marín
  • Miłosz Wieczór
  • Carlos P. Mata
  • James Krieger
  • Maria Luisa López-Redondo
  • Clara Francés-Gómez
  • Paula Ruiz-Rodriguez
  • Roberto Melero
  • Carlos Óscar Sánchez-Sorzano
  • Marta Martínez
  • Nadine Gougeard
  • Alicia Forcada-Nadal
  • Sara Zamora-Caballero
  • Roberto Gozalbo-Rovira
  • Carla Sanz-Frasquet
  • Jeronimo Bravo
  • Vicente Rubio
  • Alberto Marina
  • Ron Geller
  • Iñaki Comas
  • Carmen Gil
  • Mireia Coscolla
  • Modesto Orozco
  • José Luis Llácer
  • José-Maria Carazo
... Ver más Contraer

PLoS Pathogens - 7/12/2021

10.1371/journal.ppat.1010631

Número de citas: 8 (Web of Science)

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

  • James Michael Krieger
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo

International Journal of Molecular Sciences - 10/08/2023

10.3390/ijms241814245

Número de citas: 2 (Web of Science) 2 (Scopus)

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

On the suitability of biological structure determination by electron microscopy to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/03/2005

10.1007/bf03037653

Número de citas: 7 (Web of Science) 6 (Scopus)

New phylogenetic venues opened by a novel implementation of the DNAml algorithm

  • Trelles, O
  • Ceron, C
  • Wang, HC
  • Dopazo, J
  • Carazo, JM

Bioinformatics - 1/07/1998

10.1093/bioinformatics/14.6.544

Número de citas: 7 (Web of Science) 8 (Scopus)

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v1

  • ORCID

iNEXT: a European facility network to stimulate translational structural biology

  • Rolf Boelens
  • Dmitri Svergun
  • Jan Ellenberg
  • Cusack, Stephen
  • Martin A. Walsh
  • Banci, Lucia
  • Harald Schwalbe
  • Perrakis, Anastassis
  • van Leeuwenhoek, Antoni
  • Vladimir Sklenar
  • Jose Maria Carazo Garcia
  • Hartmut Oschkinat
  • Thompson, Andrew
  • Thunnissen, Marjolein
  • Koster, Bram
  • Gordon Leonard
  • Brutscher, Bernhard
  • Stuart, David I.
  • Poul Nissen
  • Wacklin, Hanna
  • Perczel, Andras
  • Margarida Archer
  • Wierenga, Rik
  • Spyroulias, Georgios A.
  • Sussman, Joel
  • iNEXT Consortium
... Ver más Contraer

Febs Letters - 1/06/2018

10.1002/1873-3468.13062

  • ORCID

Improvements on marker-free images alignment for electron tomography

  • C.O.S. Sorzano
  • F. de Isidro-Gómez
  • E. Fernández-Giménez
  • D. Herreros
  • S. Marco
  • J.M. Carazo
  • C. Messaoudi
... Ver más Contraer

Journal of Structural Biology: X - 24/05/2020

10.1101/2020.05.22.110445

Número de citas: 8 (Web of Science)

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

05/2020

10.1101/2020.05.12.069831

  • ORCID
Open Access

Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)

  • Ginex T.
  • Marco-Marín C.
  • Wieczór M.
  • Mata C.
  • Krieger J.
  • Ruiz-Rodriguez P.
  • López-Redondo M.L.
  • Francés-Gómez C.
  • Melero R.
  • Sánchez-Sorzano C.Ó.
  • Martínez M.
  • Gougeard N.
  • Forcada-Nadal A.
  • Zamora-Caballero S.
  • Gozalbo-Rovira R.
  • Sanz-Frasquet C.
  • Arranz R.
  • Bravo J.
  • Rubio V.
  • Marina A.
  • Geller R.
  • Comas I.
  • Gil C.
  • Coscolla M.
  • Orozco M.
  • Llácer J.L.
  • Carazo J.M.
... Ver más Contraer

PLoS Pathogens - 1/11/2022

10.1371/journal.ppat.1010995

Número de citas:

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Última actualización de los datos: 29/06/24 8:36
Próxima recolección programada: 6/07/24 3:00