Carazo García, José María Autor
Integrating electron microscopy information into existing Distributed Annotation Systems
- Macias, J. R.
- Jimenez-Lozano, N.
- Carazo, J. M.
Journal of Structural Biology - 1/05/2007
- Cuartil SJR: Q1
- CiteScore: 5,5 (2020)
- SJR: 3,196 (2007)
- SNIP: 1,173 (2007)
- Categorías SJR: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Parameter optimization in 3D reconstruction on a large scale grid
- Bilbao-Castro J.
- Merino A.
- García I.
- Carazo J.
- Fernández J.
Parallel Computing - 1/05/2007
- Cuartil SJR: Q2
- CiteScore: 3,1 (2020)
- SJR: 0,599 (2007)
- SNIP: 1,599 (2007)
- Categorías SJR: Artificial Intelligence (Q2); Computer Graphics and Computer-Aided Design (Q2); Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)
- Scopus
- ORCID
Quasi-atomic model of bacteriophage T7 procapsid shell: Insights into the structure and evolution of a basic fold
- Agirrezabala, Xabier
- Velazquez-Muriel, Javier A.
- Gomez-Puertas, Paulino
- Scheres, Sjors H. W.
- Carazo, Jose M.
- Carrascosa, Jose L.
STRUCTURE - 1/04/2007
- Cuartil SJR: Q1
- CiteScore: 9 (2020)
- SJR: 4,424 (2007)
- SNIP: 1,273 (2007)
- Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Loading a ring: Structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase
- Nunez-Ramirez, Rafael
- Velten, Marion
- Rivas, German
- Polard, Patrice
- Carazo, Jose Maria
- Donate, Luis Enrique
JOURNAL OF MOLECULAR BIOLOGY - 30/03/2007
- Cuartil SJR: Q1
- CiteScore: 8,5 (2020)
- SJR: 3,857 (2007)
- SNIP: 1,285 (2007)
- Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Electron tomography of complex biological specimens on the Grid
- Fernández J.
- García I.
- Carazo J.
- Marabini R.
Future Generation Computer Systems - 1/03/2007
- Cuartil SJR: Q1
- Factor Impacto JCR: 6,125 (2022)
- Impacto Normalizado por Categoría: 0,496 (2007)
- CiteScore: 13,3 (2020)
- SJR: 0,721 (2007)
- SNIP: 1,508 (2007)
- Categorías SJR: Computer Networks and Communications (Q1); Hardware and Architecture (Q1); Software (Q2)
- Scopus
- ORCID
- Web of Science
Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization
- Scheres, Sjors H. W.
- Gao, Haixiao
- Valle, Mikel
- Herman, Gabor T.
- Eggermont, Paul P. B.
- Frank, Joachim
- Carazo, Jose-Maria
NATURE METHODS - 1/01/2007
- Cuartil SJR: Q1
- CiteScore: 33,9 (2020)
- SJR: 5,716 (2007)
- SNIP: 1,899 (2007)
- Categorías SJR: Biochemistry (Q1); Biotechnology (Q1); Cell Biology (Q1); Molecular Biology (Q1)
- ORCID
- Web of Science
- Scopus
On the nature of 2D crystal unbending
- Gil, D.
- Carazo, J.M.
- Marabini, R.
Journal of Structural Biology - 1/12/2006
10.1016/j.jsb.2006.07.012 Ver en origen
- Cuartil SJR: Q1
- CiteScore: 5,5 (2020)
- SJR: 2,671 (2006)
- SNIP: 1,195 (2006)
- Categorías SJR: Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Optimization problems in electron microscopy of single particles
- Sorzano, C. O. S.
- Marabini, R.
- Pascual-Montano, A.
- Scheres, S. H. W.
- Carazo, J. M.
Annals of Operations Research - 1/11/2006
10.1007/s10479-006-0078-8 Ver en origen
- Cuartil JCR: Q2 (2006)
- Cuartil SJR: Q2
- Factor Impacto JCR: 0,589 (2022)
- Impacto Normalizado por Categoría: 0,264 (2006)
- CiteScore: 5,2 (2020)
- SJR: 0,61 (2006)
- SNIP: 0,983 (2006)
- Categorías SJR: Decision Sciences (miscellaneous) (Q2); Management Science and Operations Research (Q2)
- ORCID
- Scopus
- Web of Science
Parallelization of reconstruction algorithms in three-dimensional electron microscopy
- Bilbao-Castro J.
- Carazo J.
- García I.
- Fernández J.
Applied Mathematical Modelling - 1/08/2006
- Cuartil SJR: Q2
- CiteScore: 7,5 (2020)
- SJR: 0,508 (2006)
- SNIP: 1,054 (2006)
- Categorías SJR: Modeling and Simulation (Q2); Applied Mathematics (Q3)
- Scopus
- ORCID
BioNMF: A versatile tool for non-negative matrix factorization in biology
- Pascual-Montano, Alberto
- Carmona-Saez, Pedro
- Chagoyen, Monica
- Tirado, Francisco
- Carazo, Jose M.
- Pascual-Marqui, Roberto D.
Bmc Bioinformatics - 28/07/2006
- Cuartil SJR: Q1
- CiteScore: 5,7 (2020)
- SJR: 1,913 (2006)
- SNIP: 1,214 (2006)
- Categorías SJR: Applied Mathematics (Q1); Biochemistry (Q1); Computer Science Applications (Q1); Molecular Biology (Q2); Structural Biology (Q2)
- ORCID
- Scopus
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- Cuartil JCR: Q2 (2021)
- Impacto Normalizado por Categoría: 0,595 (2021)
- CiteScore: 2,2 (2020)
- SJR: 0,711 (2020)
- SNIP: 0,57 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,156 (2014)
- CiteScore: 0,8 (2020)
- ORCID
- Scopus
- Web of Science
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,312 (2014)
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- Cuartil SJR: Q3
- CiteScore: 2,2 (2020)
- SJR: 0,751 (2013)
- SNIP: 0,362 (2013)
- Categorías SJR: Genetics (Q3); Molecular Biology (Q3)
- ORCID
- Scopus
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- Factor Impacto JCR: 1,626 (2010)
- CiteScore: 2,6 (2020)
- SJR: 1,408 (2010)
- SNIP: 0,493 (2010)
- Impacto JCR a 5 años: 2,185
- Categorías JCR: BIOCHEMICAL RESEARCH METHODS
- ORCID
- Scopus
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 Ver en origen
- CiteScore: 1,8 (2020)
- ORCID
- Scopus
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
10.1117/12.185208 Ver en origen
- CiteScore: 0,8 (2020)
- ORCID
- Scopus
- Web of Science
Evolutionary genomics of SARS-CoV-2: key for viral success
- Álvarez-Herrera, M.
- Jose Maria Carazo Garcia
- Comas I
- Coscollà, M.
- Santiago F. Elena
- Francés-Gómez, C.
- Franco, M.L.
- García Rasines, D.
- Geller, R.
- Carmen Gil
- Fernando Gonzalez-Candelas
- Hillung, J.
- José Luis Llácer
- Marina, A.
- Marqués, M.C.
- Naveiro Flores, R.
- Ríos, D.
- Rodríguez Santana, S.
- Paula Ruiz-Rodriguez
- Carlos Oscar S. Sorzano
- Ulzurum, E.
- Vidal, M.
44º Congreso Nacional de la Sociedad Española de Bioquímica y Biología Molecular - 2022
- ORCID
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Stream processing of CryoElectron Microscopy images at the acquisition site
- D. Marchán
- A. García-Mena
- P. Conesa
- Francisco Javier Chichón García
- R. Arranz
- Y. Fonseca-Reyna
- L. del Caño
- I. Sánchez-López
- M. Iceta
- Jose Maria Carazo Garcia
- Carlos Oscar S. Sorzano
Instruct Biennial Structural Biology Conference - 2022
- ORCID
FSC-Q: A method for quality analysis of cryoEM-derived models
- Erney Ramírez-Aportela
- David Maluenda Niubó
- Fonseca, Yunior C.
- Pablo Conesa Mingo
- Roberto Marabini
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
Scipion for tomography: An expansion of Scipion software framework towards integration, reproducibility and validation in cryo-electron tomography
- Federico P. de Isidro-Gómez
- de la Morena, Jorge Jimenez
- Pablo Conesa Mingo
- David Herreros
- Fernandez-Gimenez, Estrella
- Fonseca, Yunior C.
- Strelak, David
- J.J. Conesa
- Ana Cuervo
- Patricia Losana
- Carlos Oscar S. Sorzano
- Jose Maria Carazo Garcia
Acta Crystallographica Section A - Foundation and Advances - 08/2021
- ORCID
Oligomeric self-assembly of a coiled-coil-based bipyramidal protein cage
- Lapenta, F.
- Aupic, J.
- Vezzoli, M.
- Strmsek, Z.
- Da Vela, S.
- Svergun, D. I.
- Jose Maria Carazo Garcia
- Roberto Melero
- Jerala, R.
Febs Open Bio - 07/2021
- ORCID
Mesa redonda sobre investigadores y Ciencia Abierta
- Alonso, F.
- Emilio Cano
- María P. Martín
- Jose Maria Carazo Garcia
- Jan Thiele
5as Jornadas de Análisis de la Red de Bibliotecas y Archivos del Csic. Bibliotecas y Archivos del Csic Por la Ciencia Abierta: Presente y Futuro - 2019
- ORCID
Towards High Throughput cryoEM data acquisition and processing, assuring reproducibility
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
Analysing cryoEM data quality in the post resolution revolution era: Validity criteria
- Jose Maria Carazo Garcia
European Biophysics Journal With Biophysics Letters - 07/2019
- ORCID
LocalDeblur: An automatic map sharpening by restauration of local resolution
- Ramirez-Aportela, E.
- Vilas, J. L.
- Carazo, J. M.
- Sanchez Sorzano, C. O.
European Biophysics Journal With Biophysics Letters - 07/2019
- Factor Impacto JCR: 2,094 (2019)
- Impacto JCR a 5 años: 1,888
- Categorías JCR: BIOPHYSICS
- ORCID
- Web of Science
Este autor no tiene patentes.
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
- James Michael Krieger
- Carlos Oscar S. Sorzano
- Jose Maria Carazo
International Journal of Molecular Sciences - 10/08/2023
- CiteScore: 7,8 (2022)
- SJR: 1,154 (2022)
- SNIP: 1,263 (2022)
- ORCID
- Web of Science
- Scopus
Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)
- Sorzano C.O.S.
- Vilas J.L.
- Ramírez-Aportela E.
- Krieger J.
- Del Hoyo D.
- Herreros D.
- Fernandez-Giménez E.
- Marchán D.
- De Isidro Gómez F.
- Macías J.R.
- Sánchez I.
- Del Caño L.
- Fonseca-Reyna Y.
- Conesa P.
- García-Mena A.
- Burguet J.
- García Condado J.
- Méndez García J.
- Martínez M.
- Muñoz-Barrutia A.
- Marabini R.
- Vargas J.
- Carazo J.M.
FARADAY DISCUSSIONS - 11/11/2022
- Factor Impacto JCR: 3,4 (2022)
- Impacto JCR a 5 años: 3,4
- Categorías JCR: CHEMISTRY, PHYSICAL
Erratum: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation (PLoS Pathog (2022) 18:7 (e1010631) DOI: 10.1371/journal.ppat.1010631)
- Ginex T.
- Marco-Marín C.
- Wieczór M.
- Mata C.
- Krieger J.
- Ruiz-Rodriguez P.
- López-Redondo M.L.
- Francés-Gómez C.
- Melero R.
- Sánchez-Sorzano C.Ó.
- Martínez M.
- Gougeard N.
- Forcada-Nadal A.
- Zamora-Caballero S.
- Gozalbo-Rovira R.
- Sanz-Frasquet C.
- Arranz R.
- Bravo J.
- Rubio V.
- Marina A.
- Geller R.
- Comas I.
- Gil C.
- Coscolla M.
- Orozco M.
- Llácer J.L.
- Carazo J.M.
PLoS Pathogens - 1/11/2022
- Factor Impacto JCR: 6,7 (2022)
- CiteScore: 10,5 (2021)
- SJR: 2,596 (2021)
- SNIP: 1,618 (2021)
- Impacto JCR a 5 años: 6,7
- Categorías JCR: VIROLOGY
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the case of the spike A222V mutation
- Tiziana Ginex
- Clara Marco-Marín
- Miłosz Wieczór
- Carlos P. Mata
- James Krieger
- Maria Luisa López-Redondo
- Clara Francés-Gómez
- Paula Ruiz-Rodriguez
- Roberto Melero
- Carlos Óscar Sánchez-Sorzano
- Marta Martínez
- Nadine Gougeard
- Alicia Forcada-Nadal
- Sara Zamora-Caballero
- Roberto Gozalbo-Rovira
- Carla Sanz-Frasquet
- Jeronimo Bravo
- Vicente Rubio
- Alberto Marina
- Ron Geller
- Iñaki Comas
- Carmen Gil
- Mireia Coscolla
- Modesto Orozco
- José Luis Llácer
- José-Maria Carazo
PLoS Pathogens - 7/12/2021
- Factor Impacto JCR: 7,464 (2021)
- CiteScore: 10,5 (2021)
- SJR: 2,596 (2021)
- SNIP: 1,618 (2021)
- Impacto JCR a 5 años: 7,913
- Categorías JCR: VIROLOGY
- ORCID
- Web of Science
- Scopus
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- Factor Impacto JCR: 4,799 (2021)
- CiteScore: 5,8 (2020)
- SJR: 0,859 (2020)
- SNIP: 0,995 (2020)
- Impacto JCR a 5 años: 3,907
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- ORCID
- Scopus
- Web of Science
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
Improvements on marker-free images alignment for electron tomography
- C.O.S. Sorzano
- F. de Isidro-Gómez
- E. Fernández-Giménez
- D. Herreros
- S. Marco
- J.M. Carazo
- C. Messaoudi
Journal of Structural Biology: X - 24/05/2020
- Cuartil SJR: Q4
- Factor Impacto JCR: 2,867 (2020)
- Impacto JCR a 5 años: 4,474
- Categorías JCR: CELL BIOLOGY
- Categorías SJR: Structural Biology (Q4)
- ORCID
- Scopus
- Web of Science
Índice h
Scopus: 52
Web of Science: 54
Índice i10
Scopus: 178
Web of Science: 192
Perfiles de autor
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Proyectos de investigación en la UAL
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Acrónimo 99109Desde: 2 de junio de 1999Hasta: 2 de junio de 2000Financiado por: Ministerio de Asuntos ExterioresImporte de financiación: 19.232,39 EURRol: Investigador