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Carazo García, José María Autor

Open Access

MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps

  • Vilas J.
  • Gómez-Blanco J.
  • Conesa P.
  • Melero R.
  • Miguel de la Rosa-Trevín J.
  • Otón J.
  • Cuenca J.
  • Marabini R.
  • Carazo J.
  • Vargas J.
  • Sorzano C.
... Ver más Contraer

Structure - 6/2/2018

10.1016/j.str.2017.12.018

Número de citas: 131 (Web of Science) 86 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 4,576 (null)
  • CiteScore: 9 (2020)
  • SJR: 3,574 (2018)
  • SNIP: 1,244 (2018)
  • Impacto JCR a 5 años: 4,831
  • Categorías JCR: BIOPHYSICS
  • Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)

Multidimensional fast Fourier transform into SIMD hypercubes

  • Zapata E.
  • Rivera F.
  • Benavides I.
  • Carazo J.
  • Peskin R.

IEE Proceedings E: Computers and Digital Techniques - 1/1/1990

10.1049/ip-e.1990.0031

Número de citas: 15 (Scopus)

Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction

  • Sorzano, COS
  • Marabini, R
  • Herman, GT
  • Carazo, JM

Pattern Recognition - 1/12/2005

10.1016/j.patcog.2005.03.013 Ver en origen

Número de citas: 7 (Web of Science) 7 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 15,7 (2020)
  • SJR: 1,069 (2005)
  • SNIP: 2,922 (2005)
  • Categorías SJR: Artificial Intelligence (Q1); Computer Vision and Pattern Recognition (Q1); Signal Processing (Q1); Software (Q1)

New electron microscopy database and deposition system

  • Tagari, M
  • Newman, R
  • Chagoyen, M
  • Carazo, JM
  • Henrick, K

TRENDS IN BIOCHEMICAL SCIENCES - 1/11/2002

10.1016/s0968-0004(02)02176-x

Número de citas: 105 (Web of Science) 98 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 24,1 (2020)
  • SJR: 10,275 (2002)
  • SNIP: 3,072 (2002)
  • Categorías SJR: Biochemistry (Q1); Molecular Biology (Q1)

New Tools and Pipelines for Continuous Heterogeneity Analysis from Cryo-EM using Normal Modes and 3D Zernike Polynomials

  • Krieger, J.
  • Herreros, D.
  • Sorzano, C. O. S.
  • Carazo, J. M.

Acta Crystallographica A-Foundation and Advances - 08/2022

10.1107/s2053273322096486

  • Factor Impacto JCR: 1,8 (2022)
  • Impacto JCR a 5 años: 2,2
  • Categorías JCR: CHEMISTRY, MULTIDISCIPLINARY

Non-rigid consistent registration of 2D image sequences

  • Arganda-Carreras, I.
  • Sorzano, C. O. S.
  • Thevenaz, P.
  • Munoz-Barrutia, A.
  • Kybic, J.
  • Marabini, R.
  • Carazo, J. M.
  • Ortiz-de Solorzano, C.
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Physics in Medicine and Biology - 21/10/2010

10.1088/0031-9155/55/20/012 Ver en origen

Número de citas: 15 (Web of Science) 12 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 3,057 (2010)
  • CiteScore: 5,9 (2020)
  • SJR: 1,888 (2010)
  • SNIP: 1,799 (2010)
  • Impacto JCR a 5 años: 3,129
  • Categorías JCR: ENGINEERING, BIOMEDICAL
  • Categorías SJR: Radiological and Ultrasound Technology (Q1); Radiology, Nuclear Medicine and Imaging (Q1)

Nonsmooth nonnegative matrix factorization (nsNMF)

  • Pascual-Montano, A
  • Carazo, JM
  • Kochi, K
  • Lehmann, D
  • Pascual-Marqui, RD

IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE - 1/03/2006

10.1109/tpami.2006.60

Número de citas: 276 (Web of Science) 277 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 44,2 (2020)
  • SJR: 2,815 (2006)
  • SNIP: 6,871 (2006)
  • Categorías SJR: Applied Mathematics (Q1); Artificial Intelligence (Q1); Computational Theory and Mathematics (Q1); Computer Vision and Pattern Recognition (Q1); Software (Q1)

Normalizing projection images: A study of image normalizing procedures for single particle three-dimensional electron microscopy

  • Sorzana, COS
  • de la Fraga, LG
  • Clackdoyle, R
  • Carazo, JM

Ultramicroscopy - 1/11/2004

10.1016/j.ultramic.2004.04.004 Ver en origen

Número de citas: 25 (Web of Science) 24 (Scopus)
  • Cuartil JCR: Q2 (2004)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 2,215 (2022)
  • Impacto Normalizado por Categoría: 0,958 (2004)
  • CiteScore: 5 (2020)
  • SJR: 1,482 (2004)
  • SNIP: 1,646 (2004)
  • Categorías SJR: Atomic and Molecular Physics, and Optics (Q1); Electronic, Optical and Magnetic Materials (Q1); Instrumentation (Q1)

OmicsHub Proteomics Software Tool.

Journal of Biomolecular Techniques : JBT - 09/2010

  • Cuartil SJR: Q3
  • Categorías SJR: Molecular Biology (Q3)
  • ORCID

On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures

  • TRELLESSALAZAR, O
  • ZAPATA, EL
  • CARAZO, JM

Bioinformatics - 1/09/1994

10.1093/bioinformatics/10.5.509

Número de citas: 7 (Web of Science) 9 (Scopus)
  • CiteScore: 9,9 (2020)
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... Ver más Contraer

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Número de citas: 1 (Web of Science) 1 (Scopus)
  • CiteScore: 1,8 (2020)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Número de citas: 18 (Scopus)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Número de citas: 67 (Web of Science) 52 (Scopus)
  • Factor Impacto JCR: 1,626 (2010)
  • CiteScore: 2,6 (2020)
  • SJR: 1,408 (2010)
  • SNIP: 0,493 (2010)
  • Impacto JCR a 5 años: 2,185
  • Categorías JCR: BIOCHEMICAL RESEARCH METHODS

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Número de citas: 5 (Web of Science) 1 (Scopus)
  • Cuartil JCR: Q2 (2021)
  • Impacto Normalizado por Categoría: 0,595 (2021)
  • CiteScore: 2,2 (2020)
  • SJR: 0,711 (2020)
  • SNIP: 0,57 (2020)

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... Ver más Contraer

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Número de citas: 9 (Web of Science) 4 (Scopus)
  • Cuartil JCR: Q2 (2014)
  • Impacto Normalizado por Categoría: 0,312 (2014)
  • CiteScore: 0,8 (2020)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... Ver más Contraer

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... Ver más Contraer

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 Ver en origen

Número de citas: 1 (Web of Science) 4 (Scopus)
  • CiteScore: 0,8 (2020)
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... Ver más Contraer

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Número de citas: 14 (Scopus)
  • Cuartil SJR: Q3
  • CiteScore: 2,2 (2020)
  • SJR: 0,751 (2013)
  • SNIP: 0,362 (2013)
  • Categorías SJR: Genetics (Q3); Molecular Biology (Q3)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Número de citas: 4 (Web of Science) 3 (Scopus)
  • Cuartil JCR: Q2 (2014)
  • Impacto Normalizado por Categoría: 0,156 (2014)
  • CiteScore: 0,8 (2020)

3-D ELECTRON MICROSCOPY AND INCOMPLETE ANGULAR COVERAGE: A RESTORATION SCHEME BASED ON PROJECTIONS ONTO CONVEX SETS.

  • Carazo J.

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings - 1/1/1988

Número de citas:
  • CiteScore: 4,6 (2020)

3-DIMENSIONAL STRUCTURE OF THE DNAB HELICASE OLIGOMER FROM ESCHERICHIA-COLI BY ELECTRON-MICROSCOPY AND IMAGE-PROCESSING

  • Carmen San Martín
  • STAMFORD, NPJ
  • DAMMEROVA, N
  • DIXON, NE
  • Jose Maria Carazo Garcia

Electron Microscopy 1994, Vols 3a and 3b - 1994

  • ORCID

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Número de citas:

A method for refining the geometry of images collected by the random conical tilt scheme based on common lines

  • de la Fraga, LG
  • Herman, GT
  • Jose Maria Carazo Garcia

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Analysing cryoEM data quality in the post resolution revolution era: Validity criteria

  • Jose Maria Carazo Garcia

European Biophysics Journal With Biophysics Letters - 07/2019

  • ORCID

A new image translational alignment method with an application in electron crystallography

  • Roca, R
  • Danielsson, PE
  • Jose Maria Carazo Garcia
  • Jose-Jesus Fernandez

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano, C.O.S.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • De La Rosa-Trevin, J.M.
  • Del Riego, S.
  • Fernandez-Alderete, A.
  • Martinez-Rey, C.
  • Marabini, R.
  • Carazo, J.M.
... Ver más Contraer

2014 IEEE International Conference on Image Processing, ICIP 2014 - 28/01/2014

10.1109/icip.2014.7025420 Ver en origen

Número de citas:
  • Categorías SJR: Computer Vision and Pattern Recognition

A semantic mediation approach for problems in computational molecular biology

  • Chagoyen M.
  • Kurul M.
  • De-Alarcon P.
  • Santini S.
  • Ludäscher B.
  • Carazo J.
  • Gupta A.
... Ver más Contraer

Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003

10.1109/csb.2003.1227339

Número de citas:
  • Categorías SJR: Transportation

AutoRes: Structure resolution determination through autocorrelation analysis

  • J. Vargas
  • Carlos Oscar S. Sorzano
  • Jose Maria Carazo Garcia

3dem Gordon Research Conference 2015 - 2015

  • ORCID

BioImage, the data base of volume images: Update on the first prototype

  • Jose Maria Carazo Garcia
  • Monica Chagoyen
  • Lucini, JL
  • Stelzer, E
  • Lindek, S
  • Fritsch, R
  • Engel, A
  • Heyman, JB
  • Fita, I
  • Susana G Kalko
  • Henn, C
  • Pittet, JJ
  • McNeil, P
  • Rodriquez-Tome, P
  • Shotton, D
  • Boudier, T
  • Machtynger, J
... Ver más Contraer

Electron Microscopy 1998, Vol 1 - 1998

  • ORCID

Este autor no tiene patentes.

Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Número de citas: 3 (Web of Science) 4 (Scopus)
  • Cuartil SJR: Q1
  • CiteScore: 9 (2020)
  • SJR: 4,47 (2004)
  • SNIP: 1,507 (2004)
  • Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... Ver más Contraer

10/2018

10.1101/433284

  • ORCID

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Número de citas: 62 (Scopus)
  • CiteScore: 5 (2020)

Biological structure determination by EM is well suited to grid computing

  • Fernandez J.
  • Bilbao-Castro J.
  • Marabini R.
  • Carazo J.
  • Garcia I.

New Generation Computing - 1/06/2004

10.1007/bf03040957

Número de citas:
  • Cuartil JCR: Q2 (2004)
  • Cuartil SJR: Q2
  • Factor Impacto JCR: 0,854 (2022)
  • CiteScore: 2,1 (2020)
  • SJR: 0,556 (2004)
  • SNIP: 1,19 (2004)
  • Categorías SJR: Computer Networks and Communications (Q2); Hardware and Architecture (Q2); Software (Q2); Theoretical Computer Science (Q2)

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... Ver más Contraer

03/2018

10.1101/279398

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID
Open Access

ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Georges A.d.
  • Abrishami V.
  • Vargas J.

Progress In Biophysics & Molecular Biology - 1/09/2021

10.1016/j.pbiomolbio.2021.01.001

Número de citas: 2 (Web of Science) 1 (Scopus)
  • Factor Impacto JCR: 4,799 (2021)
  • CiteScore: 5,8 (2020)
  • SJR: 0,859 (2020)
  • SNIP: 0,995 (2020)
  • Impacto JCR a 5 años: 3,907
  • Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
Open Access

Erratum: Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA+ hexameric helicase (Proceedings of the National Academy of Sciences of the United States of America (2008) 23:51 (20191-20196))

  • Brewster A.
  • Wang G.
  • Yu X.
  • Greenleaf W.
  • Carazo J.
  • Tjajadi M.
  • Klein M.
  • Chen X.
... Ver más Contraer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 7/4/2009

Número de citas: 1 (Scopus)
  • Cuartil SJR: Q1
  • Factor Impacto JCR: 9,432 (2009)
  • CiteScore: 16,2 (2020)
  • SJR: 7,025 (2009)
  • SNIP: 2,563 (2009)
  • Impacto JCR a 5 años: 10,312
  • Categorías JCR: MULTIDISCIPLINARY SCIENCES
  • Categorías SJR: Multidisciplinary (Q1)

Erratum: Image processing tools for the validation of CryoEM maps (Faraday Discussions (2022) DOI: 10.1039/D2FD00059H)

  • Sorzano C.O.S.
  • Vilas J.L.
  • Ramírez-Aportela E.
  • Krieger J.
  • Del Hoyo D.
  • Herreros D.
  • Fernandez-Giménez E.
  • Marchán D.
  • De Isidro Gómez F.
  • Macías J.R.
  • Sánchez I.
  • Del Caño L.
  • Fonseca-Reyna Y.
  • Conesa P.
  • García-Mena A.
  • Burguet J.
  • García Condado J.
  • Méndez García J.
  • Martínez M.
  • Muñoz-Barrutia A.
  • Marabini R.
  • Vargas J.
  • Carazo J.M.
... Ver más Contraer

FARADAY DISCUSSIONS - 11/11/2022

10.1039/d2fd90074b

Número de citas:
  • Factor Impacto JCR: 3,4 (2022)
  • Impacto JCR a 5 años: 3,4
  • Categorías JCR: CHEMISTRY, PHYSICAL

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Última actualización de los datos: 29/06/24 8:36
Próxima recolección programada: 6/07/24 3:00