Carazo García, José María

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Carazo García, José María Author

Open Access

Dynamic Effects of Cofactors and DNA on the Oligomeric State of Human Mitochondrial DNA Helicase

Ziebarth, Tawn D.
Gonzalez-Soltero, Rocio
Makowska-Grzyska, Magdalena M.
Nunez-Ramirez, Rafael
Carazo, Jose-Maria
Kaguni, Laurie S.

JOURNAL OF BIOLOGICAL CHEMISTRY - 7/05/2010

10.1074/jbc.m109.099663

Cite count: 26 (Web of Science) 23 (Scopus)

Open Access

The RepA protein of plasmid RSF1010 is a replicative DNA helicase

Scherzinger, E
Ziegelin, G
Barcena, M
Carazo, JM
Lurz, R
Lanka, E

JOURNAL OF BIOLOGICAL CHEMISTRY - 28/11/1997

10.1074/jbc.272.48.30228

Cite count: 50 (Web of Science) 50 (Scopus)

Open Access

Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum

Gomez-Llorente, Y
Fletcher, RJ
Chen, XJS
Carazo, JM
Martin, CS

Journal of Biological Chemistry - 9/12/2005

10.1074/jbc.m509760200

Cite count: 67 (Web of Science) 70 (Scopus)

Open Access

Double hexamer disruption and biochemical activities of Methanobacterium thermoautotrophicum MCM

Fletcher, RJ
Shen, JP
Gomez-Llorente, Y
San Martin, C
Carazo, JM
Chen, XJS

Journal of Biological Chemistry - 23/12/2005

10.1074/jbc.m509773200

Cite count: 40 (Web of Science) 45 (Scopus)

Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures

Melero R.
Sorzano C.O.S.
Foster B.
Vilas J.L.
Martínez M.
Marabini R.
Ramiacute;rez-Aportela E.
Sanchez-Garcia R.
Herreros D.
Del Caño L.
Losana P.
Fonseca-Reyna Y.C.
Conesa P.
Wrapp D.
Chacon P.
McLellan J.S.
Tagare H.D.
Carazo J.M.

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IUCrJ - 1/11/2020

10.1107/s2052252520012725

Cite count: 33 (Web of Science) 15 (Scopus)

Open Access

Deep Consensus, a deep learning-based approach for particle pruning in cryo-electron microscopy

Sanchez-Garcia, Ruben
Segura, Joan
Maluenda, David
Maria Carazo, Jose
Sorzano, Carlos Oscar S.

IUCrJ - 1/11/2018

10.1107/s2052252518014392 View source

Cite count: 33 (Web of Science) 18 (Scopus)

Open Access

DeepRes: A new deep-learning- and aspect-based local resolution method for electron-microscopy maps

Ramírez-Aportela E.
Mota J.
Conesa P.
Carazo J.
Sorzano C.

IUCrJ - 1/11/2019

10.1107/s2052252519011692

Cite count: 34 (Web of Science) 15 (Scopus)

Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

Herreros D.
Lederman R.R.
Krieger J.
Jimenez-Moreno A.
Martinez M.
Myska D.
Strelak D.
Filipovic J.
Bahar I.
Carazo J.M.
Sanchez C.O.S.

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IUCrJ - 1/11/2021

10.1107/s2052252521008903

Cite count: 9 (Web of Science)

Higher resolution in cryo-EM by the combination of macromolecular prior knowledge and image-processing tools

Ramírez-Aportela E.
Carazo J.M.
Sorzano C.O.S.
Sun F.

Iucrj - 1/09/2022

10.1107/s2052252522006959

Cite count:

The soft x-ray transform

Klukowska, J.
Herman, G.T.
Otón, J.
Marabini, R.
Carazo, J.-M.

Inverse Problems - 1/12/2014

10.1088/0266-5611/30/12/125015 View source

Cite count: 3 (Web of Science) 4 (Scopus)

Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

MARABINI, R
VAQUERIZO, C
FERNANDEZ, JJJ
CARAZO, JM
LADJADJ, M
ODESANYA, O
FRANK, J
Robb, RA

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Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 View source

Cite count: 1 (Web of Science) 4 (Scopus)

Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

Sorzano C.O.S.
Jiménez-Moreno A.
Maluenda D.
Ramírez-Aportela E.
Martínez M.
Cuervo A.
Melero R.
Conesa J.J.
Sánchez-García R.
Strelak D.
Filipovic J.
Fernández-Giménez E.
de Isidro-Gómez F.
Herreros D.
Conesa P.
del Caño L.
Fonseca Y.
de la Morena J.J.
Macías J.R.
Losana P.
Marabini R.
Carazo J.M.

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Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Cite count: 5 (Web of Science) 1 (Scopus)

Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

Sorzano C.
De La Rosa Trevín J.
Otón J.
Vega J.
Cuenca J.
Zaldívar-Peraza A.
Gómez-Blanco J.
Vargas J.
Quintana A.
Marabini R.
Carazo J.

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Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)

ORCID
Scopus

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

Sigworth, Fred J.
Doerschuk, Peter C.
Carazo, Jose-Maria
Scheres, Sjors H. W.
Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 67 (Web of Science) 52 (Scopus)

Exploring the conformational flexibility of molecular machines

Sjors Scheres
Herman, Gabor T.
Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

ORCID

Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

Merelo, JJ
Prieto, A
Moran, F
Marabini, R
Carazo, JM
Mira, J
MorenoDiaz, R
Cabestany, J

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Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 View source

Cite count: 1 (Web of Science) 1 (Scopus)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

Carazo J.
Herman G.
Sorzano C.
Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Scopus
ORCID

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

Carlos Oscar S. Sorzano
Roberto Marabini
J. Vargas
J. Otón
J. Cuenca-Alba
A. Quintana
J.M. de la Rosa-Trevín
Jose Maria Carazo Garcia

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Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

ORCID

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

Sorzano C.
Marabini R.
Vargas J.
Otón J.
Cuenca-Alba J.
Quintana A.
de la Rosa-Trevín J.
Carazo J.

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Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Cite count: 9 (Web of Science) 4 (Scopus)

Soft X-ray tomography imaging for biological samples

Otón J.
Sorzano C.
Chichón F.
Carrascosa J.
Carazo J.
Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Cite count: 4 (Web of Science) 3 (Scopus)

Image reconstruction on hypercube computers

Zapata E.L.
Benavides I.
Rivera F.F.
Bruguera J.D.
Carazo J.M.

1/12/1990

Cite count: 4 (Scopus)

Scopus

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

Carazo J.M.
Carrascosa J.
Santisteban A.

1/12/1985

Cite count:

Scopus

The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation

Tiziana Ginex
Wieczór, M.
Krieger, J.
Orozco, M.
Jose Maria Carazo Garcia
Carmen Gil

Xx Congreso de la Sociedad Española de Química Terapéutica - 2022

ORCID

Effects of the downsampling scheme on three-dimensional electron microscopy of single particles

Sorzano, C. O. S.
Iriarte, A.
Marabini, R.
Carazo, J. M.
IEEE

WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009

10.1109/wisp.2009.5286563 View source

Cite count: 3 (Scopus)

Electron tomography of biological specimens

Marabini R.
Carmen San Martin M.
Carazo J.

Studies in Health Technology and Informatics - 1/1/1997

10.3233/978-1-60750-874-8-53

Cite count: 2 (Scopus)

Scopus
ORCID

Functional classification of genes using non-negative independent component analysis

Monica Chagoyen
Fernandes, Hugo
Jose Maria Carazo Garcia
Pascual-Montano, Alberto

Progress In Industrial Mathematics At Ecmi - 2008

ORCID

Minisymposium \"New Trends in the Analysis of Functional Genomics Data\"

Jose Maria Carazo Garcia
Pascual, Alberto

Progress In Industrial Mathematics At Ecmi - 2008

ORCID

Biological sequence analysis on distributed-shared memory multiprocessors

Rodriguez A.
de la Fraga L.G.
Zapata E.L.
Carazo J.M.
Trelles O.

Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998

10.1109/empdp.1998.647174

Cite count: 1 (Scopus)

Scopus
ORCID

3D reconstruction of macromolecules on multiprocessors

Ujaldón M.
Asenjo R.
Zapata E.L.
Cabaleiro J.C.
Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Cite count:

Scopus
ORCID

A semantic mediation approach for problems in computational molecular biology

Chagoyen M.
Kurul M.
De-Alarcon P.
Santini S.
Ludäscher B.
Carazo J.
Gupta A.

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Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003

10.1109/csb.2003.1227339

Cite count:

ORCID
Scopus

This author has no patents.

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

Sacristan C
Ahmad M
Keller J
Fermie J
Groenewold V
Tromer E
Fish A
Melero R
Carazo JM
Klumperman J
Musacchio A
Perrakis A
Kops GJ

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03/2018

10.1101/279398

ORCID

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

Ramírez-Aportela E
Maluenda D
Fonseca YC
Conesa P
Marabini R
Heymann JB
Carazo JM
Sorzano COS

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05/2020

10.1101/2020.05.12.069831

ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

Ruben Sanchez Garcia
Josue Gomez-Blanco
Ana Cuervo
Jose Maria Carazo
Carlos Oscar S Sorzano
Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

Sorzano co
Crisman E
Carazo JM
leon r

15/07/2020

10.26434/chemrxiv.12652997.v1

ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

Kazemi M
Sorzano COS
Des Georges A
Carazo JM
Vargas J

08/2018

10.1101/400317

ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

Vargas J
Melero R
Gomez-Blanco J
Carazo J
Sorzano COS

11/2016

10.1101/088062

ORCID

Automatic local resolution-based sharpening of cryo-EM maps.

Ramirez-Aportela E
Vilas JL
Melero R
Conesa P
Martinez M
Maluenda D
Mota J
Jimenez A
Vargas J
Marabini R
Carazo JM
Sorzano COS

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10/2018

10.1101/433284

ORCID

A variant to the \'random approximation\' of the reference-free alignment algorithm

Marco S.
Chagoyen M.
De La Fraga L.
Carazo J.
Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Cite count: 62 (Scopus)

Scopus
ORCID

Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Cite count: 3 (Web of Science) 4 (Scopus)

Open Access

ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions

Kazemi M.
Sorzano C.O.S.
Carazo J.M.
Georges A.d.
Abrishami V.
Vargas J.

Progress In Biophysics & Molecular Biology - 1/09/2021

10.1016/j.pbiomolbio.2021.01.001

Cite count: 2 (Web of Science) 1 (Scopus)

h index

Scopus: 52

Web of Science: 54

i10 index

Scopus: 178

Web of Science: 192

Author profiles

ORCID
- 0000-0003-0788-8447
Web of Science ResearcherID
- E-9234-2016
Scopus Author ID
- 35500936300
Dialnet id
- 2167064

Research projects at UAL

Computación paralela en biología estructural y nuevos métodos de búsqueda en bases de datos

Acronym 99109

Since: June 2, 1999

Until: June 2, 2000

Funded by: Ministerio de Asuntos Exteriores

Funding / grant amount: 19,232.39 EUR

Role: Investigador

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Last data update: 6/15/24 8:45 AM

Next scheduled update: 6/22/24 3:00 AM