Carazo García, José María Autor
PDBe-KB: collaboratively defining the biological context of structural data
- Varadi, Mihaly
- Anyango, Stephen
- Armstrong, David
- Berrisford, John
- Choudhary, Preeti
- Deshpande, Mandar
- Nadzirin, Nurul
- Nair, Sreenath S.
- Pravda, Lukas
- Tanweer, Ahsan
- Al-Lazikani, Bissan
- Andreini, Claudia
- Barton, Geoffrey J.
- Bednar, David
- Berka, Karel
- Blundell, Tom
- Brock, Kelly P.
- Maria Carazo, Jose
- Damborsky, Jiri
- David, Alessia
- Dey, Sucharita
- Dunbrack, Roland
- Fernandez Recio, Juan
- Fraternali, Franca
- Gibson, Toby
- Helmer-Citterich, Manuela
- Hoksza, David
- Hopf, Thomas
- Jakubec, David
- Kannan, Natarajan
- Krivak, Radoslav
- Kumar, Manjeet
- Levy, Emmanuel D.
- London, Nir
- Macias, Jose Ramon
- Srivatsan, Madhusudhan M.
- Marks, Debora S.
- Martens, Lennart
- McGowan, Stuart A.
- McGreig, Jake E.
- Modi, Vivek
- Gonzalo Parra, R.
- Pepe, Gerardo
- Piovesan, Damiano
- Prilusky, Jaime
- Putignano, Valeria
- Radusky, Leandro G.
- Ramasamy, Pathmanaban
- Rausch, Atilio O.
- Reuter, Nathalie
- Rodriguez, Luis A.
- Rollins, Nathan J.
- Rosato, Antonio
- Serrano, Luis
- Singh, Gulzar
- Skoda, Petr
- Sorzano, Carlos Oscar S.
- Stourac, Jan
- Sulkowska, Joanna, I
- Svobodova, Radka
- Tichshenko, Natalia
- Tosatto, Silvio C. E.
- Vranken, Wim
- Wass, Mark N.
- Xue, Dandan
- Zaidman, Daniel
- Thornton, Janet
- Sternberg, Michael
- Orengo, Christine
- Velankar, Sameer
- PDBe-KB Consortium
NUCLEIC ACIDS RESEARCH - 10/11/2021
- Factor Impacto JCR: 19,16 (2021)
- CiteScore: 28 (2021)
- SJR: 8,241 (2021)
- SNIP: 5,19 (2021)
- Impacto JCR a 5 años: 17,21
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information
- Nogales-Cadenas, Ruben
- Carmona-Saez, Pedro
- Vazquez, Miguel
- Vicente, Cesar
- Yang, Xiaoyuan
- Tirado, Francisco
- Maria Carazo, Jose
- Pascual-Montano, Alberto
NUCLEIC ACIDS RESEARCH - 1/07/2009
- Cuartil SJR: Q1
- Factor Impacto JCR: 7,479 (2009)
- CiteScore: 23,5 (2020)
- SJR: 5,669 (2009)
- SNIP: 1,955 (2009)
- Impacto JCR a 5 años: 7,279
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Categorías SJR: Genetics (Q1)
- Scopus
- ORCID
- Web of Science
Organising multi-dimensional biological image information: The BioImage database
- Carazo, JM
- Stelzer, EHK
- Engel, A
- Fita, I
- Henn, C
- Machtynger, J
- McNeil, P
- Shotton, DM
- Chagoyen, M
- de Alarcon, PA
- Fritsch, R
- Heymann, JB
- Kalko, S
- Pittet, JJ
- Rodriguez-Tome, P
- Boudier, T
Nucleic Acids Research - 1/01/1999
- Cuartil SJR: Q1
- CiteScore: 23,5 (2020)
- SJR: 4,69 (1999)
- SNIP: 1,548 (1999)
- Categorías SJR: Genetics (Q1)
- Scopus
- ORCID
- Web of Science
CentrosomeDB: A human centrosomal proteins database
- Nogales-Cadenas, Ruben
- Abascal, Federico
- Diez-Perez, Javier
- Maria Carazo, Jose
- Pascual-Montano, Alberto
Nucleic Acids Research - 9/01/2009
- Cuartil SJR: Q1
- Factor Impacto JCR: 7,479 (2009)
- CiteScore: 23,5 (2020)
- SJR: 5,669 (2009)
- SNIP: 1,955 (2009)
- Impacto JCR a 5 años: 7,279
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Categorías SJR: Genetics (Q1)
- Scopus
- ORCID
- Web of Science
SENT: Semantic features in text
- Vazquez, Miguel
- Carmona-Saez, Pedro
- Nogales-Cadenas, Ruben
- Chagoyen, Monica
- Tirado, Francisco
- Maria Carazo, Jose
- Pascual-Montano, Alberto
Nucleic Acids Research - 1/07/2009
- Cuartil SJR: Q1
- Factor Impacto JCR: 7,479 (2009)
- CiteScore: 23,5 (2020)
- SJR: 5,669 (2009)
- SNIP: 1,955 (2009)
- Impacto JCR a 5 años: 7,279
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Categorías SJR: Genetics (Q1)
- Scopus
- ORCID
- Web of Science
MARQ: An online tool to mine GEO for experiments with similar or opposite gene expression signatures
- Vazquez, Miguel
- Nogales-Cadenas, Ruben
- Arroyo, Javier
- Botias, Pedro
- Garcia, Raul
- Carazo, Jose M.
- Tirado, Francisco
- Pascual-Montano, Alberto
- Carmona-Saez, Pedro
Nucleic Acids Research - 29/07/2010
- Cuartil SJR: Q1
- Factor Impacto JCR: 7,836 (2010)
- CiteScore: 23,5 (2020)
- SJR: 5,381 (2010)
- SNIP: 1,865 (2010)
- Impacto JCR a 5 años: 7,314
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Categorías SJR: Genetics (Q1)
- Scopus
- ORCID
- Web of Science
Automatic classification of biological particles from electron-microscopy images using conventional and genetic-algorithm optimized learning vector quantization
- Merelo, J.J.
- Prieto, A.
- Morán, F.
- Marabini, R.
- Carazo, J.M.
Neural Processing Letters - 1/08/1998
10.1023/a:1009617113191 Ver en origen
- CiteScore: 4,2 (2020)
- Scopus
- ORCID
- Web of Science
Helicases as nucleic acid unwinding machines
- Waksman, G
- Lanka, E
- Carazo, JM
NATURE STRUCTURAL BIOLOGY - 1/01/2000
- Scopus
- ORCID
- Web of Science
Data management challenges in three-dimensional EM
- Patwardhan, Ardan
- Carazo, Jose-Maria
- Carragher, Bridget
- Henderson, Richard
- Heymann, J. Bernard
- Hill, Emma
- Jensen, Grant J.
- Lagerstedt, Ingvar
- Lawson, Catherine L.
- Ludtke, Steven J.
- Mastronarde, David
- Moore, William J.
- Roseman, Alan
- Rosenthal, Peter
- Sorzano, Carlos-Oscar S.
- Sanz-Garcia, Eduardo
- Scheres, Sjors H. W.
- Subramaniam, Sriram
- Westbrook, John
- Winn, Martyn
- Swedlow, Jason R.
- Kleywegt, Gerard J.
NATURE STRUCTURAL and MOLECULAR BIOLOGY - 1/12/2012
10.1038/nsmb.2426 Ver en origen
- Cuartil SJR: Q1
- Factor Impacto JCR: 11,902 (2012)
- CiteScore: 19,3 (2020)
- SJR: 12,177 (2012)
- SNIP: 2,607 (2012)
- Impacto JCR a 5 años: 12,307
- Categorías JCR: CELL BIOLOGY
- Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
Image processing for electron microscopy single-particle analysis using XMIPP
- Scheres, S.H.W.
- Núñez-Ramírez, R.
- Sorzano, C.O.S.
- Carazo, J.M.
- Marabini, R.
NATURE PROTOCOLS - 1/5/2008
10.1038/nprot.2008.62 Ver en origen
- Cuartil JCR: Q1 (2008)
- Cuartil SJR: Q1
- Factor Impacto JCR: 4,17 (2022)
- Impacto Normalizado por Categoría: 5,795 (2008)
- CiteScore: 19,8 (2020)
- SJR: 2,937 (2008)
- SNIP: 1,331 (2008)
- Categorías SJR: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1)
- Scopus
- ORCID
- Web of Science
ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING
- MARABINI, R
- VAQUERIZO, C
- FERNANDEZ, JJJ
- CARAZO, JM
- LADJADJ, M
- ODESANYA, O
- FRANK, J
- Robb, RA
Visualization in Biomedical Computer 1994 - 9/09/1994
10.1117/12.185208 Ver en origen
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano C.O.S.
- Jiménez-Moreno A.
- Maluenda D.
- Ramírez-Aportela E.
- Martínez M.
- Cuervo A.
- Melero R.
- Conesa J.J.
- Sánchez-García R.
- Strelak D.
- Filipovic J.
- Fernández-Giménez E.
- de Isidro-Gómez F.
- Herreros D.
- Conesa P.
- del Caño L.
- Fonseca Y.
- de la Morena J.J.
- Macías J.R.
- Losana P.
- Marabini R.
- Carazo J.M.
Methods in Molecular Biology - 1/1/2021
- Cuartil JCR: Q2 (2021)
- Impacto Normalizado por Categoría: 0,595 (2021)
- CiteScore: 2,2 (2020)
- SJR: 0,711 (2020)
- SNIP: 0,57 (2020)
- Scopus
- ORCID
- Web of Science
Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy
- Sorzano C.
- De La Rosa Trevín J.
- Otón J.
- Vega J.
- Cuenca J.
- Zaldívar-Peraza A.
- Gómez-Blanco J.
- Vargas J.
- Quintana A.
- Marabini R.
- Carazo J.
Methods in Molecular Biology - 1/1/2013
- Cuartil SJR: Q3
- CiteScore: 2,2 (2020)
- SJR: 0,751 (2013)
- SNIP: 0,362 (2013)
- Categorías SJR: Genetics (Q3); Molecular Biology (Q3)
- Scopus
- ORCID
AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM
- Sigworth, Fred J.
- Doerschuk, Peter C.
- Carazo, Jose-Maria
- Scheres, Sjors H. W.
- Jensen, GJ
Methods in Enzymology - 1/1/2010
- Factor Impacto JCR: 1,626 (2010)
- CiteScore: 2,6 (2020)
- SJR: 1,408 (2010)
- SNIP: 0,493 (2010)
- Impacto JCR a 5 años: 2,185
- Categorías JCR: BIOCHEMICAL RESEARCH METHODS
- Scopus
- ORCID
- Web of Science
Exploring the conformational flexibility of molecular machines
- Sjors Scheres
- Herman, Gabor T.
- Jose Maria Carazo Garcia
Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008
- ORCID
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Merelo, JJ
- Prieto, A
- Moran, F
- Marabini, R
- Carazo, JM
- Mira, J
- MorenoDiaz, R
- Cabestany, J
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997
10.1007/bfb0032577 Ver en origen
- CiteScore: 1,8 (2020)
- Scopus
- ORCID
- Web of Science
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J.
- Herman G.
- Sorzano C.
- Marabini R.
Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006
- Scopus
- ORCID
Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.
- Carlos Oscar S. Sorzano
- Roberto Marabini
- J. Vargas
- J. Otón
- J. Cuenca-Alba
- A. Quintana
- J.M. de la Rosa-Trevín
- Jose Maria Carazo Garcia
Computational Methods For Three-dimensional Microscopy Reconstruction - 2014
- ORCID
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano C.
- Marabini R.
- Vargas J.
- Otón J.
- Cuenca-Alba J.
- Quintana A.
- de la Rosa-Trevín J.
- Carazo J.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,312 (2014)
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Soft X-ray tomography imaging for biological samples
- Otón J.
- Sorzano C.
- Chichón F.
- Carrascosa J.
- Carazo J.
- Marabini R.
Applied and Numerical Harmonic Analysis - 1/1/2014
- Cuartil JCR: Q2 (2014)
- Impacto Normalizado por Categoría: 0,156 (2014)
- CiteScore: 0,8 (2020)
- Scopus
- ORCID
- Web of Science
Image reconstruction on hypercube computers
- Zapata E.L.
- Benavides I.
- Rivera F.F.
- Bruguera J.D.
- Carazo J.M.
1/12/1990
THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.
- Carazo J.M.
- Carrascosa J.
- Santisteban A.
1/12/1985
The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation
- Tiziana Ginex
- Wieczór, M.
- Krieger, J.
- Orozco, M.
- Jose Maria Carazo Garcia
- Carmen Gil
Xx Congreso de la Sociedad Española de Química Terapéutica - 2022
- ORCID
Effects of the downsampling scheme on three-dimensional electron microscopy of single particles
- Sorzano, C. O. S.
- Iriarte, A.
- Marabini, R.
- Carazo, J. M.
- IEEE
WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009
10.1109/wisp.2009.5286563 Ver en origen
- Categorías SJR: Computer Networks and Communications; Media Technology; Signal Processing
- Scopus
- ORCID
- Web of Science
Electron tomography of biological specimens
- Marabini R.
- Carmen San Martin M.
- Carazo J.
Studies in Health Technology and Informatics - 1/1/1997
- CiteScore: 1,2 (2020)
- Scopus
- ORCID
Functional classification of genes using non-negative independent component analysis
- Monica Chagoyen
- Fernandes, Hugo
- Jose Maria Carazo Garcia
- Pascual-Montano, Alberto
Progress In Industrial Mathematics At Ecmi - 2008
- ORCID
Minisymposium \"New Trends in the Analysis of Functional Genomics Data\"
- Jose Maria Carazo Garcia
- Pascual, Alberto
Progress In Industrial Mathematics At Ecmi - 2008
- ORCID
Biological sequence analysis on distributed-shared memory multiprocessors
- Rodriguez A.
- de la Fraga L.G.
- Zapata E.L.
- Carazo J.M.
- Trelles O.
Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998
- Scopus
- ORCID
3D reconstruction of macromolecules on multiprocessors
- Ujaldón M.
- Asenjo R.
- Zapata E.L.
- Cabaleiro J.C.
- Carazo J.M.
Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994
- Scopus
- ORCID
A semantic mediation approach for problems in computational molecular biology
Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003
- Categorías SJR: Transportation
- Scopus
- ORCID
Este autor no tiene patentes.
Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis
- Sacristan C
- Ahmad M
- Keller J
- Fermie J
- Groenewold V
- Tromer E
- Fish A
- Melero R
- Carazo JM
- Klumperman J
- Musacchio A
- Perrakis A
- Kops GJ
03/2018
- ORCID
FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
05/2020
- ORCID
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
- Ruben Sanchez Garcia
- Josue Gomez-Blanco
- Ana Cuervo
- Jose Maria Carazo
- Carlos Oscar S Sorzano
- Javier Vargas
13/06/2020
- ORCID
Multitarget Virtual Screening for Drug Repurposing in COVID19
- Sorzano co
- Crisman E
- Carazo JM
- leon r
15/07/2020
- ORCID
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M
- Sorzano COS
- Des Georges A
- Carazo JM
- Vargas J
08/2018
- ORCID
Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis
- Vargas J
- Melero R
- Gomez-Blanco J
- Carazo J
- Sorzano COS
11/2016
- ORCID
Automatic local resolution-based sharpening of cryo-EM maps.
- Ramirez-Aportela E
- Vilas JL
- Melero R
- Conesa P
- Martinez M
- Maluenda D
- Mota J
- Jimenez A
- Vargas J
- Marabini R
- Carazo JM
- Sorzano COS
10/2018
- ORCID
A variant to the \'random approximation\' of the reference-free alignment algorithm
- Marco S.
- Chagoyen M.
- De La Fraga L.
- Carazo J.
- Carrascosa J.
Ultramicroscopy - 1/11/1996
- CiteScore: 5 (2020)
- Scopus
- ORCID
Accessing Information on the Conformational Flexibility of Molecular Machines
- Carazo, JM
Structure - 1/02/2004
- Cuartil SJR: Q1
- CiteScore: 9 (2020)
- SJR: 4,47 (2004)
- SNIP: 1,507 (2004)
- Categorías SJR: Molecular Biology (Q1); Structural Biology (Q1)
- Scopus
- ORCID
- Web of Science
ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions
- Kazemi M.
- Sorzano C.O.S.
- Carazo J.M.
- Georges A.d.
- Abrishami V.
- Vargas J.
Progress In Biophysics & Molecular Biology - 1/09/2021
10.1016/j.pbiomolbio.2021.01.001
- Factor Impacto JCR: 4,799 (2021)
- CiteScore: 5,8 (2020)
- SJR: 0,859 (2020)
- SNIP: 0,995 (2020)
- Impacto JCR a 5 años: 3,907
- Categorías JCR: BIOCHEMISTRY & MOLECULAR BIOLOGY
- Scopus
- ORCID
- Web of Science
Índice h
Scopus: 52
Web of Science: 54
Índice i10
Scopus: 178
Web of Science: 192
Perfiles de autor
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ORCID
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Web of Science ResearcherID
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Scopus Author ID
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Dialnet id
Proyectos de investigación en la UAL
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Acrónimo 99109Desde: 2 de junio de 1999Hasta: 2 de junio de 2000Financiado por: Ministerio de Asuntos ExterioresImporte de financiación: 19.232,39 EURRol: Investigador