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Carazo García, José María Author

Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization

  • Scheres, Sjors H. W.
  • Gao, Haixiao
  • Valle, Mikel
  • Herman, Gabor T.
  • Eggermont, Paul P. B.
  • Frank, Joachim
  • Carazo, Jose-Maria
... View more Collapse

NATURE METHODS - 1/01/2007

10.1038/nmeth992

Cite count: 314 (Web of Science) 292 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 33.9 (2020)
  • SJR: 5.716 (2007
  • SNIP: 1.899 (2007
  • SJR Categories: Biochemistry (Q1); Biotechnology (Q1); Cell Biology (Q1); Molecular Biology (Q1)
Open Access

Self-assembly and regulation of protein cages from pre-organised coiled-coil modules

  • Lapenta F.
  • Aupič J.
  • Vezzoli M.
  • Strmšek Ž.
  • Da Vela S.
  • Svergun D.I.
  • Carazo J.M.
  • Melero R.
  • Jerala R.
... View more Collapse

Nature Communications - 1/12/2021

10.1038/s41467-021-21184-6

Cite count: 24 (Web of Science) 3 (Scopus)
  • JCR Impact Factor: 17.694 (2021)
  • JCR 5-year Impact Factor: 17.764
  • JCR Categories: MULTIDISCIPLINARY SCIENCES

Measuring local-directional resolution and local anisotropy in cryo-EM maps

  • Jose Luis Vilas
  • Hemant D. Tagare
  • Javier Vargas
  • Jose Maria Carazo
  • Carlos Oscar S. Sorzano

Nature Communications - 1/12/2020

10.1038/s41467-019-13742-w

Cite count: 20 (Web of Science) 13 (Scopus)
  • JCR Impact Factor: 14.919 (2020)
  • CiteScore: 20 (2020)
  • SJR: 5.559 (2020
  • SNIP: 3.055 (2020
  • JCR 5-year Impact Factor: 15.805
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
Open Access

Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials

  • D. Herreros
  • R. R. Lederman
  • J. M. Krieger
  • A. Jiménez-Moreno
  • M. Martínez
  • D. Myška
  • D. Strelak
  • J. Filipovic
  • C. O. S. Sorzano
  • J. M. Carazo
... View more Collapse

Nature Communications - 11/01/2023

10.1038/s41467-023-35791-y

Cite count: 11 (Web of Science) 9 (Scopus)
Open Access

Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ

  • Koning, Roman I.
  • Gomez-Blanco, Josue
  • Akopjana, Inara
  • Vargas, Javier
  • Kazaks, Andris
  • Tars, Kaspars
  • Maria Carazo, Jose
  • Koster, Abraham J.
... View more Collapse

Nature Communications - 26/08/2016

10.1038/ncomms12524

Cite count: 86 (Web of Science) 70 (Scopus)
  • SJR Quartile: Q1
  • JCR Impact Factor: 12.124 (2016)
  • CiteScore: 20 (2020)
  • SJR: 6.414 (2016
  • SNIP: 2.916 (2016
  • JCR 5-year Impact Factor: 13.092
  • JCR Categories: MULTIDISCIPLINARY SCIENCES
  • SJR Categories: Biochemistry, Genetics and Molecular Biology (miscellaneous) (Q1); Chemistry (miscellaneous) (Q1); Physics and Astronomy (miscellaneous) (Q1)

FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation

  • Ramírez-Aportela E.
  • Maluenda D.
  • Fonseca Y.C.
  • Conesa P.
  • Marabini R.
  • Heymann J.B.
  • Carazo J.M.
  • Sorzano C.O.S.
... View more Collapse

Nature Communications - 1/12/2021

10.1038/s41467-020-20295-w

Cite count: 22 (Web of Science) 3 (Scopus)
  • JCR Impact Factor: 17.694 (2021)
  • JCR 5-year Impact Factor: 17.764
  • JCR Categories: MULTIDISCIPLINARY SCIENCES

Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules.

  • Lapenta F.
  • Aupič J.
  • Vezzoli M.
  • Strmšek Ž.
  • Da Vela S.
  • Svergun D.I.
  • Carazo J.M.
  • Melero R.
  • Jerala R.
... View more Collapse

Nature communications - 1/03/2021

10.1038/s41467-021-21969-9

Cite count:
  • JCR Impact Factor: 17.694 (2021)
  • JCR 5-year Impact Factor: 17.764
  • JCR Categories: MULTIDISCIPLINARY SCIENCES

Dynamic kinetochore size regulation promotes microtubule capture and chromosome biorientation in mitosis

  • Sacristan, Carlos
  • Ahmad, Misbha Ud Din
  • Keller, Jenny
  • Fermie, Job
  • Groenewold, Vincent
  • Tromer, Eelco
  • Fish, Alexander
  • Melero, Roberto
  • Carazo, Jose Maria
  • Klumperman, Judith
  • Musacchio, Andrea
  • Perrakis, Anastassis
  • Kops, Geert J. P. L.
... View more Collapse

NATURE CELL BIOLOGY - 1/07/2018

10.1038/s41556-018-0130-3

Cite count: 63 (Web of Science) 34 (Scopus)
  • JCR Quartile: Q2 (2018)
  • SJR Quartile: Q1
  • JCR Impact Factor: 17.728 (2022)
  • Category normalized Impact: 1.865 (2018)
  • CiteScore: 31.5 (2020)
  • SJR: 12.137 (2018
  • SNIP: 3.322 (2018
  • JCR 5-year Impact Factor: 20.551
  • JCR Categories: CELL BIOLOGY
  • SJR Categories: Cell Biology (Q1)

Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo

  • Ljubetic, Ajasja
  • Lapenta, Fabio
  • Gradisar, Helena
  • Drobnak, Igor
  • Aupic, Jana
  • Strmsek, Ziga
  • Lainscek, Dusko
  • Hafner-Bratkovic, Iva
  • Majerle, Andreja
  • Krivec, Nusa
  • Bencina, Mojca
  • Pisanski, Tomaz
  • Velickovic, Tanja Cirkovic
  • Round, Adam
  • Maria Carazo, Jose
  • Melero, Roberto
  • Jerala, Roman
... View more Collapse

NATURE BIOTECHNOLOGY - 1/11/2017

10.1038/nbt.3994

Cite count: 114 (Web of Science) 85 (Scopus)
  • JCR Quartile: Q2 (2017)
  • SJR Quartile: Q1
  • JCR Impact Factor: 35.724 (2022)
  • Category normalized Impact: 5.208 (2017)
  • CiteScore: 37.4 (2020)
  • SJR: 18.252 (2017
  • SNIP: 6.291 (2017
  • JCR 5-year Impact Factor: 43.271
  • JCR Categories: BIOTECHNOLOGY & APPLIED MICROBIOLOGY
  • SJR Categories: Applied Microbiology and Biotechnology (Q1); Bioengineering (Q1); Biomedical Engineering (Q1); Biotechnology (Q1); Molecular Medicine (Q1)
Open Access

3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures

  • Sanchez-Garcia, Ruben
  • Sanchez Sorzano, Carlos Oscar
  • Maria Carazo, Jose
  • Segura, Joan

MOLECULES - 1/12/2017

10.3390/molecules22122230 View source

Cite count: 29 (Web of Science) 15 (Scopus)
  • JCR Quartile: Q1 (2017)
  • SJR Quartile: Q1
  • JCR Impact Factor: 2.468 (2022)
  • Category normalized Impact: 1.456 (2017)
  • CiteScore: 3.4 (2020)
  • SJR: 0.818 (2018
  • SNIP: 1.19 (2018
  • JCR 5-year Impact Factor: 3.268
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY
  • SJR Categories: Analytical Chemistry (Q1); Chemistry (miscellaneous) (Q1); Pharmaceutical Science (Q1); Drug Discovery (Q2); Medicine (miscellaneous) (Q2); Organic Chemistry (Q2); Physical and Theoretical Chemistry (Q2); Molecular Medicine (Q3)
Open Access

ON A PROTOTYPE FOR A NEW DISTRIBUTED DATA-BASE OF VOLUME DATA OBTAINED BY 3D IMAGING

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J
  • Robb, RA
... View more Collapse

Visualization in Biomedical Computer 1994 - 9/09/1994

10.1117/12.185208 View source

Cite count: 1 (Web of Science) 4 (Scopus)
  • CiteScore: 0.8 (2020)
Open Access

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano C.O.S.
  • Jiménez-Moreno A.
  • Maluenda D.
  • Ramírez-Aportela E.
  • Martínez M.
  • Cuervo A.
  • Melero R.
  • Conesa J.J.
  • Sánchez-García R.
  • Strelak D.
  • Filipovic J.
  • Fernández-Giménez E.
  • de Isidro-Gómez F.
  • Herreros D.
  • Conesa P.
  • del Caño L.
  • Fonseca Y.
  • de la Morena J.J.
  • Macías J.R.
  • Losana P.
  • Marabini R.
  • Carazo J.M.
... View more Collapse

Methods in Molecular Biology - 1/1/2021

10.1007/978-1-0716-1406-8_13

Cite count: 5 (Web of Science) 1 (Scopus)
  • JCR Quartile: Q2 (2021)
  • Category normalized Impact: 0.595 (2021)
  • CiteScore: 2.2 (2020)
  • SJR: 0.711 (2020
  • SNIP: 0.57 (2020
Open Access

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C.
  • De La Rosa Trevín J.
  • Otón J.
  • Vega J.
  • Cuenca J.
  • Zaldívar-Peraza A.
  • Gómez-Blanco J.
  • Vargas J.
  • Quintana A.
  • Marabini R.
  • Carazo J.
... View more Collapse

Methods in Molecular Biology - 1/1/2013

10.1007/978-1-62703-137-0_11

Cite count: 14 (Scopus)
  • SJR Quartile: Q3
  • CiteScore: 2.2 (2020)
  • SJR: 0.751 (2013
  • SNIP: 0.362 (2013
  • SJR Categories: Genetics (Q3); Molecular Biology (Q3)

AN INTRODUCTION TO MAXIMUM-LIKELIHOOD METHODS IN CRYO-EM

  • Sigworth, Fred J.
  • Doerschuk, Peter C.
  • Carazo, Jose-Maria
  • Scheres, Sjors H. W.
  • Jensen, GJ

Methods in Enzymology - 1/1/2010

10.1016/s0076-6879(10)82011-7

Cite count: 67 (Web of Science) 52 (Scopus)
  • JCR Impact Factor: 1.626 (2010)
  • CiteScore: 2.6 (2020)
  • SJR: 1.408 (2010
  • SNIP: 0.493 (2010
  • JCR 5-year Impact Factor: 2.185
  • JCR Categories: BIOCHEMICAL RESEARCH METHODS

Exploring the conformational flexibility of molecular machines

  • Sjors Scheres
  • Herman, Gabor T.
  • Jose Maria Carazo Garcia

Mathematical Methods In Biomedical Imaging and Intensity-modulated Radiation Therapy (imrt) - 2008

  • ORCID
Open Access

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Merelo, JJ
  • Prieto, A
  • Moran, F
  • Marabini, R
  • Carazo, JM
  • Mira, J
  • MorenoDiaz, R
  • Cabestany, J
... View more Collapse

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) - 1/1/1997

10.1007/bfb0032577 View source

Cite count: 1 (Web of Science) 1 (Scopus)
  • CiteScore: 1.8 (2020)

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J.
  • Herman G.
  • Sorzano C.
  • Marabini R.

Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell - 1/1/2006

10.1007/978-0-387-69008-7_8

Cite count: 18 (Scopus)

Interchanging geometry information in electron microscopy single particle analysis: mathematical context for the development of a standard.

  • Carlos Oscar S. Sorzano
  • Roberto Marabini
  • J. Vargas
  • J. Otón
  • J. Cuenca-Alba
  • A. Quintana
  • J.M. de la Rosa-Trevín
  • Jose Maria Carazo Garcia
... View more Collapse

Computational Methods For Three-dimensional Microscopy Reconstruction - 2014

  • ORCID

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano C.
  • Marabini R.
  • Vargas J.
  • Otón J.
  • Cuenca-Alba J.
  • Quintana A.
  • de la Rosa-Trevín J.
  • Carazo J.
... View more Collapse

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_2

Cite count: 9 (Web of Science) 4 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.312 (2014)
  • CiteScore: 0.8 (2020)

Soft X-ray tomography imaging for biological samples

  • Otón J.
  • Sorzano C.
  • Chichón F.
  • Carrascosa J.
  • Carazo J.
  • Marabini R.

Applied and Numerical Harmonic Analysis - 1/1/2014

10.1007/978-1-4614-9521-5_8

Cite count: 4 (Web of Science) 3 (Scopus)
  • JCR Quartile: Q2 (2014)
  • Category normalized Impact: 0.156 (2014)
  • CiteScore: 0.8 (2020)

Image reconstruction on hypercube computers

  • Zapata E.L.
  • Benavides I.
  • Rivera F.F.
  • Bruguera J.D.
  • Carazo J.M.

1/12/1990

Cite count: 4 (Scopus)

THREE-DIMENSIONAL RECONSTRUCTION BY THE DIRECT FOURIER METHOD: AN IMAGE SIMULATION APPROACH TO THE CASE OF INCOMPLETE DATA.

  • Carazo J.M.
  • Carrascosa J.
  • Santisteban A.

1/12/1985

Cite count:

The role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: the spike A222V mutation

  • Tiziana Ginex
  • Wieczór, M.
  • Krieger, J.
  • Orozco, M.
  • Jose Maria Carazo Garcia
  • Carmen Gil

Xx Congreso de la Sociedad Española de Química Terapéutica - 2022

  • ORCID

Effects of the downsampling scheme on three-dimensional electron microscopy of single particles

  • Sorzano, C. O. S.
  • Iriarte, A.
  • Marabini, R.
  • Carazo, J. M.
  • IEEE

WISP 2009 - 6th IEEE International Symposium on Intelligent Signal Processing - Proceedings - 10/08/2009

10.1109/wisp.2009.5286563 View source

Cite count: 3 (Scopus)
  • SJR Categories: Computer Networks and Communications; Media Technology; Signal Processing

Electron tomography of biological specimens

  • Marabini R.
  • Carmen San Martin M.
  • Carazo J.

Studies in Health Technology and Informatics - 1/1/1997

10.3233/978-1-60750-874-8-53

Cite count: 2 (Scopus)
  • CiteScore: 1.2 (2020)

Functional classification of genes using non-negative independent component analysis

  • Monica Chagoyen
  • Fernandes, Hugo
  • Jose Maria Carazo Garcia
  • Pascual-Montano, Alberto

Progress In Industrial Mathematics At Ecmi - 2008

  • ORCID

Minisymposium \"New Trends in the Analysis of Functional Genomics Data\"

  • Jose Maria Carazo Garcia
  • Pascual, Alberto

Progress In Industrial Mathematics At Ecmi - 2008

  • ORCID

Biological sequence analysis on distributed-shared memory multiprocessors

  • Rodriguez A.
  • de la Fraga L.G.
  • Zapata E.L.
  • Carazo J.M.
  • Trelles O.

Proceedings of The 6th Euromicro Workshop On Parallel and Distributed Processing, Pdp 1998 - 1/1/1998

10.1109/empdp.1998.647174

Cite count: 1 (Scopus)

3D reconstruction of macromolecules on multiprocessors

  • Ujaldón M.
  • Asenjo R.
  • Zapata E.L.
  • Cabaleiro J.C.
  • Carazo J.M.

Proceedings of The 2nd Euromicro Workshop On Parallel and Distributed Processing, Pdp 1994 - 1/1/1994

10.1109/empdp.1994.592499

Cite count:

A semantic mediation approach for problems in computational molecular biology

  • Chagoyen M.
  • Kurul M.
  • De-Alarcon P.
  • Santini S.
  • Ludäscher B.
  • Carazo J.
  • Gupta A.
... View more Collapse

Proceedings of The 2003 Ieee Bioinformatics Conference, Csb 2003 - 1/1/2003

10.1109/csb.2003.1227339

Cite count:
  • SJR Categories: Transportation

This author has no patents.

Dynamic Kinetochore Size Regulation Promotes Microtubule Capture And Chromosome Biorientation In Mitosis

  • Sacristan C
  • Ahmad M
  • Keller J
  • Fermie J
  • Groenewold V
  • Tromer E
  • Fish A
  • Melero R
  • Carazo JM
  • Klumperman J
  • Musacchio A
  • Perrakis A
  • Kops GJ
... View more Collapse

03/2018

10.1101/279398

  • ORCID

FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation

  • Ramírez-Aportela E
  • Maluenda D
  • Fonseca YC
  • Conesa P
  • Marabini R
  • Heymann JB
  • Carazo JM
  • Sorzano COS
... View more Collapse

05/2020

10.1101/2020.05.12.069831

  • ORCID

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

  • Ruben Sanchez Garcia
  • Josue Gomez-Blanco
  • Ana Cuervo
  • Jose Maria Carazo
  • Carlos Oscar S Sorzano
  • Javier Vargas

13/06/2020

10.1101/2020.06.12.148296

  • ORCID

Multitarget Virtual Screening for Drug Repurposing in COVID19

  • Sorzano co
  • Crisman E
  • Carazo JM
  • leon r

15/07/2020

10.26434/chemrxiv.12652997.v1

  • ORCID

ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M
  • Sorzano COS
  • Des Georges A
  • Carazo JM
  • Vargas J

08/2018

10.1101/400317

  • ORCID

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis

  • Vargas J
  • Melero R
  • Gomez-Blanco J
  • Carazo J
  • Sorzano COS

11/2016

10.1101/088062

  • ORCID

Automatic local resolution-based sharpening of cryo-EM maps.

  • Ramirez-Aportela E
  • Vilas JL
  • Melero R
  • Conesa P
  • Martinez M
  • Maluenda D
  • Mota J
  • Jimenez A
  • Vargas J
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

10/2018

10.1101/433284

  • ORCID

A variant to the \'random approximation\' of the reference-free alignment algorithm

  • Marco S.
  • Chagoyen M.
  • De La Fraga L.
  • Carazo J.
  • Carrascosa J.

Ultramicroscopy - 1/11/1996

10.1016/s0304-3991(96)00083-6

Cite count: 62 (Scopus)
  • CiteScore: 5 (2020)
Open Access

Accessing Information on the Conformational Flexibility of Molecular Machines

  • Carazo, JM

Structure - 1/02/2004

10.1016/j.str.2004.01.017

Cite count: 3 (Web of Science) 4 (Scopus)
  • SJR Quartile: Q1
  • CiteScore: 9 (2020)
  • SJR: 4.47 (2004
  • SNIP: 1.507 (2004
  • SJR Categories: Molecular Biology (Q1); Structural Biology (Q1)
Open Access

ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions

  • Kazemi M.
  • Sorzano C.O.S.
  • Carazo J.M.
  • Georges A.d.
  • Abrishami V.
  • Vargas J.

Progress In Biophysics & Molecular Biology - 1/09/2021

10.1016/j.pbiomolbio.2021.01.001

Cite count: 2 (Web of Science) 1 (Scopus)
  • JCR Impact Factor: 4.799 (2021)
  • CiteScore: 5.8 (2020)
  • SJR: 0.859 (2020
  • SNIP: 0.995 (2020
  • JCR 5-year Impact Factor: 3.907
  • JCR Categories: BIOCHEMISTRY & MOLECULAR BIOLOGY

Scopus: 52

Web of Science: 54

Scopus: 178

Web of Science: 192

Last data update: 5/18/24 8:47 AM
Next scheduled update: 5/25/24 3:00 AM